Zhenjun Hu

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2016 J jnl
COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps.
Nucleic Acids Res.
Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Simon Kasif, Richard J. Roberts, Martin Steffen
2016 J jnl
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.
PLoS Comput. Biol.
Brian Granger, Yi-Chien Chang, Yan Wang, Charles DeLisi, Daniel Segrè, Zhenjun Hu
2013 J jnl
VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies.
Nucleic Acids Res.
Zhenjun Hu, Yi-Chien Chang, Yan Wang, Chia-Ling Huang, Yang Liu, Feng Tian, Brian Granger, Charles DeLisi
2012 J jnl
Gene set enrichment analysis: performance evaluation and usage guidelines.
Briefings Bioinform.
Jui-Hung Hung, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi
2012 J jnl
Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer.
PLoS Comput. Biol.
Daichi Shigemizu, Zhenjun Hu, Jui-Hung Hung, Chia-Ling Huang, Yajie Wang, Charles DeLisi
2011 J jnl
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Nucleic Acids Res.
Richard J. Roberts, Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Revonda M. Pokrzywa, Han-Pil Choi, Lina L. Faller, Jyotsna Guleria, Genevieve Housman, Niels Klitgord, Varun Mazumdar, Mark G. McGettrick, Lais Osmani, Rajeswari Swaminathan, Kevin R. Tao, Stanley Letovsky, Dennis Vitkup, Daniel Segrè, Steven L. Salzberg, Charles DeLisi, Martin Steffen, Simon Kasif
2009 J jnl
VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.
Nucleic Acids Res.
Zhenjun Hu, Jui-Hung Hung, Yan Wang, Yi-Chien Chang, Chia-Ling Huang, Matt Huyck, Charles DeLisi
2008 J jnl
VisANT: an integrative framework for networks in systems biology.
Briefings Bioinform.
Zhenjun Hu, Evan S. Snitkin, Charles DeLisi
2007 J jnl
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.
Nucleic Acids Res.
Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi
2006 J jnl
Gene annotation and network inference by phylogenetic profiling.
BMC Bioinform.
Jie Wu, Zhenjun Hu, Charles DeLisi
2005 J jnl
Dynamic visual data mining: biological sequence analysis and annotation using SeqVISTA.
Int. J. Bioinform. Res. Appl.
Tianhua Niu, Zhenjun Hu
2005 J jnl
VisANT: data-integrating visual framework for biological networks and modules.
Nucleic Acids Res.
Zhenjun Hu, Joe Mellor, Jie Wu, Takuji Yamada, Dustin T. Holloway, Charles DeLisi
2004 J jnl
SNPicker: a graphical tool for primer picking in designing mutagenic endonuclease restriction assays.
Bioinform.
Tianhua Niu, Zhenjun Hu
2004 J jnl
SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.
Nucleic Acids Res.
Zhenjun Hu, Yutao Fu, Anason S. Halees, Szymon M. Kielbasa, Zhiping Weng
2004 J jnl
VisANT: an online visualization and analysis tool for biological interaction data.
BMC Bioinform.
Zhenjun Hu, Joseph C. Mellor, Jie Wu, Charles DeLisi
2003 J jnl
SeqVISTA: a graphical tool for sequence feature visualization and comparison.
BMC Bioinform.
Zhenjun Hu, Martin C. Frith, Tianhua Niu, Zhiping Weng