Zhen Chen

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2024 J jnl
Current computational tools for protein lysine acylation site prediction.
Briefings Bioinform.
Zhaohui Qin, Haoran Ren, Pei Zhao, Kaiyuan Wang, Huixia Liu, Chunbo Miao, Yanxiu Du, Junzhou Li, Liuji Wu, Zhen Chen
2023 J jnl
ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning.
Briefings Bioinform.
Xiaoti Jia, Pei Zhao, Fuyi Li, Zhaohui Qin, Haoran Ren, Junzhou Li, Chunbo Miao, Quanzhi Zhao, Tatsuya Akutsu, Gensheng Dou, Zhen Chen, Jiangning Song
2022 J jnl
PCfun: a hybrid computational framework for systematic characterization of protein complex function.
Briefings Bioinform.
Varun S. Sharma, Andrea Fossati, Rodolfo Ciuffa, Marija Buljan, Evan G. Williams, Zhen Chen, Wenguang Shao, Patrick G. A. Pedrioli, Anthony W. Purcell, María Rodríguez Martínez, Jiangning Song, Matteo Manica, Ruedi Aebersold, Chen Li
2021 J jnl
nhKcr: a new bioinformatics tool for predicting crotonylation sites on human nonhistone proteins based on deep learning.
Briefings Bioinform.
Yong-Zi Chen, Zhuo-Zhi Wang, Yanan Wang, Guoguang Ying, Zhen Chen, Jiangning Song
2020 J jnl
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.
Briefings Bioinform.
Zhen Chen, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song
2020 J jnl
Identification of Protein Lysine Crotonylation Sites by a Deep Learning Framework With Convolutional Neural Networks.
IEEE Access
Yiming Zhao, Ningning He, Zhen Chen, Lei Li
2020 J jnl
PROSPECT: A web server for predicting protein histidine phosphorylation sites.
J. Bioinform. Comput. Biol.
Zhen Chen, Pei Zhao, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Geoffrey I. Webb, Abdelkader Baggag, Halima Bensmail, Jiangning Song
2020 J jnl
iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.
Briefings Bioinform.
Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song
2019 J jnl
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites.
Briefings Bioinform.
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li, Kuo-Chen Chou, Jiangning Song
2018 J jnl
Integration of A Deep Learning Classifier with A Random Forest Approach for Predicting Malonylation Sites.
Genom. Proteom. Bioinform.
Zhen Chen, Ningning He, Yu Huang, Wen Tao Qin, Xuhan Liu, Lei Li
2018 J jnl
iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences.
Bioinform.
Zhen Chen, Pei Zhao, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Yanan Wang, Geoffrey I. Webb, Alexander Ian Smith, Roger J. Daly, Kuo-Chen Chou, Jiangning Song
2015 J jnl
Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features.
Briefings Bioinform.
Zhen Chen, Yuan Zhou, Ziding Zhang, Jiangning Song
2011 J jnl
Outer membrane proteins can be simply identified using secondary structure element alignment.
BMC Bioinform.
Ren-Xiang Yan, Zhen Chen, Ziding Zhang