Zhe He - RankMe

120 papers B 3Misc 19Journal 48Unranked 49

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A Scoping Review of Synthetic Data Generation for Biomedical Research and Applications. CoRR Hanshu Rao, Weisi Liu, Haohan Wang, I-Chan Huang, Zhe He, Xiaolei Huang
2025	J	`jnl`	Evaluation of Causal Reasoning for Large Language Models in Contextualized Clinical Scenarios of Laboratory Test Interpretation. CoRR Balu Bhasuran, Mattia Prosperi, Karim Hanna, John Petrilli, Caretia JeLayne Washington, Zhe He
2025	—	`conf`	Lab-Ai: Using Retrieval Augmentation to Enhance Language Models for Personalized Lab Test Interpretation in Clinical Medicine. ICHI Xiaoyu Wang, Haoyong Ouyang, Balu Bhasuran, Xiao Luo, Karim Hanna, Mia Liza A. Lustria, Zhe He
2025	J	`jnl`	Ontology enrichment using a large language model: Applying lexical, semantic, and knowledge network-based similarity for concept placement. J. Biomed. Informatics Navya Martin Kollapally, James Geller, Vipina Kuttichi Keloth, Zhe He, Julia Xu
2025	J	`jnl`	Preliminary analysis of the impact of lab results on large language model generated differential diagnoses. npj Digit. Medicine Balu Bhasuran, Qiao Jin, Yuzhang Xie, Carl Yang, Karim Hanna, Jennifer Costa, Cindy Shavor, Wenshan Han, Zhiyong Lu, Zhe He
2025	—	`conf`	Utilizing Large Language Models for Zero-Shot Medical Ontology Extension from Clinical Notes. BIBM Guanchen Wu, Yuzhang Xie, Huanwei Wu, Zhe He, Hui Shao, Xiao Hu, Carl Yang
2025	J	`jnl`	Utilizing Large Language Models for Zero-Shot Medical Ontology Extension from Clinical Notes. CoRR Guanchen Wu, Yuzhang Xie, Huanwei Wu, Zhe He, Hui Shao, Xiao Hu, Carl Yang
2024	J	`jnl`	AgentMD: Empowering Language Agents for Risk Prediction with Large-Scale Clinical Tool Learning. CoRR Qiao Jin, Zhizheng Wang, Yifan Yang, Qingqing Zhu, Donald Wright, Thomas Huang, W. John Wilbur, Zhe He, Andrew Taylor, Qingyu Chen, Zhiyong Lu
2024	J	`jnl`	Demystifying Large Language Models for Medicine: A Primer. CoRR Qiao Jin, Nicholas Wan, Robert Leaman, Shubo Tian, Zhizheng Wang, Yifan Yang, Zifeng Wang, Guangzhi Xiong, Po-Ting Lai, Qingqing Zhu, Benjamin Hou, Maame Sarfo-Gyamfi, Gongbo Zhang, Aidan Gilson, Balu Bhasuran, Zhe He, Aidong Zhang, Jimeng Sun, Chunhua Weng, Ronald M. Summers, Qingyu Chen, Yifan Peng, Zhiyong Lu
2024	—	`conf`	Enhancing patient Comprehension: An effective sequential prompting approach to simplifying EHRs using LLMs. BIBM Mahshad Koohi Habibi Dehkordi, Shuxin Zhou, Yehoshua Perl, Fadi P. Deek, Andrew J. Einstein, Gai Elhanan, Zhe He, Hao Liu
2024	J	`jnl`	Evaluating the Impact of Lab Test Results on Large Language Models Generated Differential Diagnoses from Clinical Case Vignettes. CoRR Balu Bhasuran, Qiao Jin, Yuzhang Xie, Carl Yang, Karim Hanna, Jennifer Costa, Cindy Shavor, Zhiyong Lu, Zhe He
2024	J	`jnl`	Lab-AI - Retrieval-Augmented Language Model for Personalized Lab Test Interpretation in Clinical Medicine. CoRR Xiaoyu Wang, Haoyong Ouyang, Balu Bhasuran, Xiao Luo, Karim Hanna, Mia Liza A. Lustria, Zhe He
2024	—	`conf`	Message from the General Chairs; ICHI 2024. ICHI Zhe He, Yi Guo, Jiang Bian
2024	—	`conf`	Predicting HIV Diagnosis Among Emerging Adults Using Electronic Health Records and Health Survey Data in All of Us Research Program. BIBM Balu Bhasuran, Yiyang Liu, Mattia Prosperi, Karen MacDonell, Sylvie Naar, Zhe He
2024	B	`conf`	Preface; CHASE 2024. CHASE Insup Lee, Weisong Shi, Zhe He, Ye Sun
2024	J	`jnl`	Quality of Answers of Generative Large Language Models vs Peer Patients for Interpreting Lab Test Results for Lay Patients: Evaluation Study. CoRR Zhe He, Balu Bhasuran, Qiao Jin, Shubo Tian, Karim Hanna, Cindy Shavor, Lisbeth Y. Garcia Arguello, Patrick Murray, Zhiyong Lu
2024	J	`jnl`	Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. J. Am. Medical Informatics Assoc. Shaika Chowdhury, Yongbin Chen, Pengyang Li, Sivaraman Rajaganapathy, Andrew Wen, Xiao Ma, Qiying Dai, Yue Yu, Sunyang Fu, Xiaoqian Jiang, Zhe He, Sunghwan Sohn, Xiaoke Liu, Suzette J. Bielinski, Alanna M. Chamberlain, James R. Cerhan, Nansu Zong
2024	J	`jnl`	Time Matters: Examine Temporal Effects on Biomedical Language Models. CoRR Weisi Liu, Zhe He, Xiaolei Huang
2023	—	`conf`	Benchmarking Transformer-Based Models for Identifying Social Determinants of Health in Clinical Notes. ICHI Xiaoyu Wang, Dipankar Gupta, Michael O. Killian, Zhe He
2023	—	`conf`	Building Prediction Models for 30-Day Readmissions Among ICU Patients Using Both Structured and Unstructured Data in Electronic Health Records. BIBM Alex Moerschbacher, Zhe He
2023	—	`conf`	Can Attention Be Used to Explain EHR-Based Mortality Prediction Tasks: A Case Study on Hemorrhagic Stroke. BCB Qizhang Feng, Jiayi Yuan, Forhan Bin Emdad, Karim Hanna, Xia Hu, Zhe He
2023	J	`jnl`	Can Attention Be Used to Explain EHR-Based Mortality Prediction Tasks: A Case Study on Hemorrhagic Stroke. CoRR Qizhang Feng, Jiayi Yuan, Forhan Bin Emdad, Karim Hanna, Xia Hu, Zhe He
2023	J	`jnl`	Editorial: Explainable artificial intelligence for critical healthcare applications. Frontiers Artif. Intell. Zhe He, Rui Zhang, Gayo Diallo, Zhengxing Huang, Benjamin S. Glicksberg
2023	J	`jnl`	Improving Primary Healthcare Workflow Using Extreme Summarization of Scientific Literature Based on Generative AI. CoRR Gregor Stiglic, Leon Kopitar, Lucija Gosak, Primoz Kocbek, Zhe He, Prithwish Chakraborty, Pablo Meyer, Jiang Bian
2023	—	`conf`	Parsing Clinical Trial Eligibility Criteria for Cohort Query by a Multi-Input Multi-Output Sequence Labeling Model. BIBM Shubo Tian, Pengfei Yin, Hansi Zhang, Arslan Erdengasileng, Jiang Bian, Zhe He
2023	B	`conf`	Zero-shot Learning with Minimum Instruction to Extract Social Determinants and Family History from Clinical Notes using GPT Model. IEEE Big Data Neel Bhate, Ansh Mittal, Zhe He, Xiao Luo
2023	J	`jnl`	Zero-shot Learning with Minimum Instruction to Extract Social Determinants and Family History from Clinical Notes using GPT Model. CoRR Neel Bhate, Ansh Mittal, Zhe He, Xiao Luo
2022	J	`jnl`	A Machine-Learning Based Approach for Predicting Older Adults' Adherence to Technology-Based Cognitive Training. Inf. Process. Manag. Zhe He, Shubo Tian, Ankita Singh, Shayok Chakraborty, Shenghao Zhang, Mia Liza A. Lustria, Neil Charness, Nelson A. Roque, Erin Harrell, Walter R. Boot
2022	—	`conf`	Classifying Drug Ratings Using User Reviews with Transformer-Based Language Models. ICHI Akhil Shiju, Zhe He
2022	J	`jnl`	Temporal Subtyping of Alzheimer's Disease Using Medical Conditions Preceding Alzheimer's Disease Onset in Electronic Health Records. CoRR Zhe He, Shubo Tian, Arslan Erdengasileng, Neil Charness, Jiang Bian
2022	—	`conf`	Using Twitter Data Analysis to Understand the Perceptions, Awareness, and Barriers to the Wide Use of Pre-Exposure Prophylaxis in the United States. BIBM Arslan Erdengasileng, Shubo Tian, Sara S. Green, Sylvie Naar, Zhe He
2021	Misc	`conf`	Assessing the Use of Prescription Drugs in Obese Respondents in the National Health and Nutrition Examination Survey. AMIA Laura A. Barrett, Aiwen Xing, Elizabeth Steidley, Terrence J. Adam, Rui Zhang, Zhe He
2021	J	`jnl`	Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer's disease. npj Digit. Medicine Zhaoyi Chen, Hansi Zhang, Yi Guo, Thomas J. George, Mattia Prosperi, William R. Hogan, Zhe He, Elizabeth A. Shenkman, Fei Wang, Jiang Bian
2021	J	`jnl`	How do mothers exchange parenting-related information in online communities? A meta-synthesis. Comput. Hum. Behav. Juan Xie, Zhe He, Gary Burnett, Ying Cheng
2021	—	`conf`	Identification of Dietary Supplement Use from Electronic Health Records Using Transformer-based Language Models. ICHI Sicheng Zhou, Dalton Schutte, Aiwen Xing, Jiyang Chen, Julian Wolfson, Zhe He, Fang Yu, Rui Zhang
2021	—	`conf`	Pregnancy-Related Information Seeking in Online Health Communities: A Qualitative Study. iConference (2) Yu Lu, Zhan Zhang, Katherine Min, Xiao Luo, Zhe He
2021	—	`conf`	Transformer-based named entity recognition for parsing clinical trial eligibility criteria. BCB Shubo Tian, Arslan Erdengasileng, Xi Yang, Yi Guo, Yonghui Wu, Jinfeng Zhang, Jiang Bian, Zhe He
2020	J	`jnl`	A deep learning approach for identifying cancer survivors living with post-traumatic stress disorder on Twitter. BMC Medical Informatics Decis. Mak. Nur Hafieza Ismail, Ninghao Liu, Mengnan Du, Zhe He, Xia Hu
2020	J	`jnl`	A review of auditing techniques for the Unified Medical Language System. J. Am. Medical Informatics Assoc. Ling Zheng, Zhe He, Duo Helen Wei, Vipina Kuttichi Keloth, Jungwei Fan, Luke Lindemann, Xinxin Zhu, James J. Cimino, Yehoshua Perl
2020	—	`conf`	Attention Mechanism with BERT for Content Annotation and Categorization of Pregnancy-Related Questions on a Community Q&A Site. BIBM Xiao Luo, Haoran Ding, Matthew Tang, Priyanka Gandhi, Zhan Zhang, Zhe He
2020	Misc	`conf`	Deep Learning Approach to Parse Eligibility Criteria in Dietary Supplements Clinical Trials Following OMOP Common Data Model. AMIA Anusha Bompelli, Jianfu Li, Yiqi Xu, Nan Wang, Yanshan Wang, Terrence J. Adam, Zhe He, Rui Zhang
2020	B	`conf`	DeepConsensus: Consensus-based Interpretable Deep Neural Networks with Application to Mortality Prediction. IJCNN Shaeke Salman, Seyedeh Neelufar Payrovnaziri, Xiuwen Liu, Pablo Rengifo-Moreno, Zhe He
2020	J	`jnl`	Explainable artificial intelligence models using real-world electronic health record data: a systematic scoping review. J. Am. Medical Informatics Assoc. Seyedeh Neelufar Payrovnaziri, Zhaoyi Chen, Pablo Rengifo-Moreno, Tim Miller, Jiang Bian, Jonathan H. Chen, Xiuwen Liu, Zhe He
2020	Misc	`conf`	Retrieving Lab Test Related Questions from Social Q&A Sites by Combining Shallow Features and Deep Representations. AMIA Yu Lu, Xiao Luo, Zhan Zhang, Haoran Ding, Zhe He
2020	J	`jnl`	Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019). BMC Medical Informatics Decis. Mak. Zhe He, Cui Tao, Jiang Bian, Rui Zhang
2020	Misc	`conf`	Using Real-World Data to Rationalize Clinical Trials Eligibility Criteria: a case study on Alzheimer's Disease and Donepezil. AMIA Qian Li, Yi Guo, Zhe He, Hansi Zhang, Thomas J. George, Jiang Bian
2019	J	`jnl`	ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design. BMC Medical Informatics Decis. Mak. Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jinhai Huo, Jordan Alpert, Jiang Bian
2019	J	`jnl`	Alternative classification of identical concepts in different terminologies: Different ways to view the world. J. Biomed. Informatics Vipina Kuttichi Keloth, Zhe He, Gai Elhanan, James Geller
2019	—	`conf`	Analyzing Social Media Data to Understand Consumer Information Needs on Dietary Supplements. MedInfo Rubina F. Rizvi, Yefeng Wang, Thao Nguyen, Jake Vasilakes, Jiang Bian, Zhe He, Rui Zhang
2019	J	`jnl`	Analyzing Social Media Data to Understand Consumers' Information Needs on Dietary Supplements. CoRR Rubina F. Rizvi, Yefeng Wang, Thao Nguyen, Jake Vasilakes, Jiang Bian, Zhe He, Rui Zhang
2019	Misc	`conf`	Assessing the Validity of a a priori Patient-Trial Generalizability Score using Real-world Data from a Large Clinical Data Research Network: A Colorectal Cancer Clinical Trial Case Study. AMIA Qian Li, Zhe He, Yi Guo, Hansi Zhang, Thomas J. George, William R. Hogan, Neil Charness, Jiang Bian
2019	J	`jnl`	Biomedical word sense disambiguation with bidirectional long short-term memory and attention-based neural networks. BMC Bioinform. Canlin Zhang, Daniel Bis, Xiuwen Liu, Zhe He
2019	Misc	`conf`	Contextualizing Consumer Health Information Seeking. AMIA Zhan Zhang, Caleb Wilson, Zhe He
2019	—	`conf`	Enhancing Prediction Models for One-Year Mortality in Patients with Acute Myocardial Infarction and Post Myocardial Infarction Syndrome. MedInfo Seyedeh Neelufar Payrovnaziri, Laura A. Barrett, Daniel Bis, Jiang Bian, Zhe He
2019	J	`jnl`	Enhancing Prediction Models for One-Year Mortality in Patients with Acute Myocardial Infarction and Post Myocardial Infarction Syndrome. CoRR Seyedeh Neelufar Payrovnaziri, Laura A. Barrett, Daniel Bis, Jiang Bian, Zhe He
2019	—	`conf`	Exploring the Discrepancies in Actual and Perceived Benefits of Dietary Supplements Among Obese Patients. MedInfo Zhe He, Laura A. Barrett, Rubina F. Rizvi, Seyedeh Neelufar Payrovnaziri, Rui Zhang
2019	J	`jnl`	Extracting chemical-protein interactions from literature using sentence structure analysis and feature engineering. Database J. Biol. Databases Curation Pei-Yau Lung, Zhe He, Tingting Zhao, Disa Yu, Jinfeng Zhang
2019	—	`conf`	Identification of Cancer Survivors Living with PTSD on Social Media. MedInfo Nur Hafieza Ismail, Ninghao Liu, Mengnan Du, Zhe He, Xia Hu
2019	—	`conf`	Improving Patient Participation in Cancer Clinical Trials: A Qualitative Analysis of HSRProj & RePORTER. MedInfo Lynette Hammond Gerido, Zhe He
2019	J	`jnl`	Interpretable Deep Neural Networks for Patient Mortality Prediction: A Consensus-based Approach. CoRR Shaeke Salman, Seyedeh Neelufar Payrovnaziri, Xiuwen Liu, Zhe He
2019	—	`conf`	Making Sense of Clinical Laboratory Results: An Analysis of Questions and Replies in a Social Q&A Community. MedInfo Zhan Zhang, Yu Lu, Caleb Wilson, Zhe He
2019	—	`conf`	Multivariate Multi-step Deep Learning Time Series Approach in Forecasting Parkinson's Disease Future Severity Progression. BCB Nur Hafieza Ismail, Mengnan Du, Diego Martinez, Zhe He
2019	—	`ed.`	Proceedings of the 4th International Workshop on Semantics-Powered Data Mining and Analytics co-located with the 18th International Semantic Web Conference (ISWC 2019), Aukland, New Zealand, October 27, 2019. SEPDA@ISWC Zhe He, Jiang Bian, Cui Tao, Rui Zhang
2019	J	`jnl`	Selected articles from the Third International Workshop on Semantics-Powered Data Analytics (SEPDA 2018). BMC Medical Informatics Decis. Mak. Zhe He, Jiang Bian, Cui Tao, Rui Zhang
2019	—	`conf`	Understanding Patient Information Needs About Their Clinical Laboratory Results: A Study of Social Q&A Site. MedInfo Zhan Zhang, Yu Lu, Yubo Kou, Danny T. Y. Wu, Jina Huh-Yoo, Zhe He
2019	—	`conf`	Understanding Perceptions and Attitudes in Breast Cancer Discussions on Twitter. MedInfo François Modave, Yunpeng Zhao, Janice L. Krieger, Zhe He, Yi Guo, Jinhai Huo, Mattia Prosperi, Jiang Bian
2019	J	`jnl`	Understanding Perceptions and Attitudes in Breast Cancer Discussions on Twitter. CoRR François Modave, Yunpeng Zhao, Janice L. Krieger, Zhe He, Yi Guo, Jinhai Huo, Mattia Prosperi, Jiang Bian
2019	—	`conf`	Using Deep Neural Network to Identify Cancer Survivors Living with Post-Traumatic Stress Disorder on Social Media. SEPDA@ISWC Nur Hafieza Ismail, Ninghao Liu, Mengnan Du, Zhe He, Xia Hu
2018	J	`jnl`	Assessing the practice of biomedical ontology evaluation: Gaps and opportunities. J. Biomed. Informatics Muhammad Amith, Zhe He, Jiang Bian, Juan Antonio Lossio-Ventura, Cui Tao
2018	J	`jnl`	Building Computational Models to Predict One-Year Mortality in ICU Patients with Acute Myocardial Infarction and Post Myocardial Infarction Syndrome. CoRR Laura A. Barrett, Seyedeh Neelufar Payrovnaziri, Jiang Bian, Zhe He
2018	Misc	`conf`	Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials. AMIA Hansi Zhang, Zhe He, Xing He, Yi Guo, David R. Nelson, François Modave, Yonghui Wu, William R. Hogan, Mattia Prosperi, Jiang Bian
2018	J	`jnl`	Correction to: Evaluating semantic relations in neural word embeddings with biomedical and general domain knowledge bases. BMC Medical Informatics Decis. Mak. Zhiwei Chen, Zhe He, Xiuwen Liu, Jiang Bian
2018	J	`jnl`	Evaluating semantic relations in neural word embeddings with biomedical and general domain knowledge bases. BMC Medical Informatics Decis. Mak. Zhiwei Chen, Zhe He, Xiuwen Liu, Jiang Bian
2018	—	`conf`	Extended Analysis of Topological-Pattern-Based Ontology Enrichment. BIBM Zhe He, Vipina Kuttichi Keloth, Yan Chen, James Geller
2018	J	`jnl`	Introduction: selected extended articles from the 2nd International Workshop on Semantics-Powered Data Analytics (SEPDA 2017). BMC Medical Informatics Decis. Mak. Zhe He, Cui Tao, Jiang Bian, Rui Zhang, Jingshan Huang
2018	—	`conf`	Layered Multistep Bidirectional Long Short-Term Memory Networks for Biomedical Word Sense Disambiguation. BIBM Daniel Bis, Canlin Zhang, Xiuwen Liu, Zhe He
2018	Misc	`conf`	Leveraging Horizontal Density Differences between Ontologies to Identify Missing Child Concepts: A Proof of Concept. AMIA Vipina Kuttichi Keloth, Zhe He, Yan Chen, James Geller
2018	J	`jnl`	Natural Language Processing Empowered Mobile Computing. Wirel. Commun. Mob. Comput. Tianyong Hao, Raymond K. Wong, Zhe He, Haoran Xie, Tak-Lam Wong, Fu Lee Wang
2018	J	`jnl`	OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system. BMC Medical Informatics Decis. Mak. Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Xi Yang, Hansi Zhang, Jiang Bian
2018	Misc	`conf`	Opportunities to Improve Methods for Increasing Participation in Cancer Clinical Trials. AMIA Lynette Hammond Gerido, Zhe He
2018	—	`conf`	Patient-Centered Strategies to Increase Participation in Cancer Clinical Trials. ICHI Lynette Hammond Gerido, Zhe He
2018	—	`conf`	Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph. BIBM Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jiang Bian
2017	Misc	`conf`	A Visual Analysis Tool of Qualitative Eligibility Criteria of Clinical Studies. AMIA Zhe He, Zhiwei Chen, Sarah Mixon, Jiang Bian
2017	—	`conf`	An exploration of semantic relations in neural word embeddings using extrinsic knowledge. BIBM Zhiwei Chen, Zhe He, Xiuwen Liu, Jiang Bian
2017	—	`conf`	Auditing the assignments of top-level semantic types in the UMLS semantic network to UMLS concepts. BIBM Zhe He, Yehoshua Perl, Gai Elhanan, Yan Chen, James Geller, Jiang Bian
2017	Misc	`conf`	Building an Obesity and Cancer Semantic Web Knowledge Base. AMIA Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Amanda Hicks, Yi Guo, Zhe He, Mirela Vasconcelos, Jiang Bian
2017	—	`conf`	Comparative Analysis of Geriatric and Adult Drug Clinical Trials on ClinicalTrials.gov. MedInfo Zhe He, Aisha Langford
2017	Misc	`conf`	Comparing and Contrasting A Priori and A Posteriori Generalizability Assessment of Clinical Trials on Type 2 Diabetes Mellitus. AMIA Zhe He, Arturo Gonzalez-Izquierdo, Spiros C. Denaxas, Andrei Sura, Yi Guo, William R. Hogan, Elizabeth Shenkman, Jiang Bian
2017	—	`conf`	Emergent trends in research to increase participation of underrepresented populations in cancer clinical trials: A qualitative analysis of the HSRProj database. ASIST Lynette Hammond Gerido, Michelle M. Kazmer, Zhe He, Marcia A. Mardis
2017	J	`jnl`	Enriching consumer health vocabulary through mining a social Q&A site: A similarity-based approach. J. Biomed. Informatics Zhe He, Zhiwei Chen, Sanghee Oh, Jinghui Hou, Jiang Bian
2017	—	`conf`	Exploratory textual analysis of consumer health languages for people who are D/deaf and hard of hearing. BIBM Biyang Yu, Zhe He
2017	—	`conf`	Explore Care Pathways of Colorectal Cancer Patients with Social Network Analysis. MedInfo Tianyao Huo, Thomas J. George Jr., Yi Guo, Zhe He, Mattia Prosperi, François Modave, Jiang Bian
2017	—	`conf`	Exploring text classification of social support in online health communities for people who are D/deaf and hard of hearing. ASIST Biyang Yu, Lynette Hammond Gerido, Zhe He
2017	Misc	`conf`	Implementing a Hash-based Privacy-Preserving Entity Resolution Tool in the OneFlorida Clinical Data Research Network. AMIA Jiang Bian, Andrei Sura, Gloria P. Lipori, Yi Guo, François Modave, Zhe He, Elizabeth Shenkman, William R. Hogan
2017	—	`conf`	OC-2-KB: A software pipeline to build an evidence-based obesity and cancer knowledge base. BIBM Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Amanda Hicks, Jiang Bian
2017	—	`conf`	Perceiving the Usefulness of the National Cancer Institute Metathesaurus for Enriching NCIt with Topological Patterns. MedInfo Zhe He, Yan Chen, James Geller
2016	—	`conf`	Analysis of temporal constraints in qualitative eligibility criteria of cancer clinical studies. BIBM Zhe He, Zhiwei Chen, Jiang Bian
2016	—	`conf`	Assessing the comorbidity gap between clinical studies and prevalence in elderly patient populations. BHI Zhe He, Neil Charness, Jiang Bian, William R. Hogan
2016	—	`conf`	Assessing the population representativeness of colorectal cancer treatment clinical trials. EMBC Zhe He, Zhiwei Chen, Thomas J. George, Gloria P. Lipori, Jiang Bian
2016	J	`jnl`	DREAM: Classification scheme for dialog acts in clinical research query mediation. J. Biomed. Informatics Julia Hoxha, Praveen Chandar Ravichandran, Zhe He, James J. Cimino, David A. Hanauer, Chunhua Weng
2016	Misc	`conf`	Examining Healthcare Utilization Patterns of Elderly and Middle-Aged Adults in the United States. FLAIRS Cilia E. Zayas, Zhe He, Jiawei Yuan, Mildred Maldonado-Molina, William R. Hogan, François Modave, Yi Guo, Jiang Bian
2016	J	`jnl`	Multivariate analysis of the population representativeness of related clinical studies. J. Biomed. Informatics Zhe He, Patrick B. Ryan, Julia Hoxha, Shuang Wang, Simona Carini, Ida Sim, Chunhua Weng
2016	—	`conf`	Preliminary Analysis of Difficulty of Importing Pattern-Based Concepts into the National Cancer Institute Thesaurus. MIE Zhe He, James Geller
2016	Misc	`conf`	Topological-Pattern-Based Recommendation of UMLS Concepts for National Cancer Institute Thesaurus. AMIA Zhe He, Yan Chen, Sherri de Coronado, Katrina Piskorski, James Geller
2016	—	`conf`	Towards an obesity-cancer knowledge base: Biomedical entity identification and relation detection. BIBM Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Amanda Hicks, Josh Hanna, Yi Guo, Zhe He, Jiang Bian
2016	J	`jnl`	Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. J. Biomed. Informatics Christopher Ochs, Zhe He, Ling Zheng, James Geller, Yehoshua Perl, George Hripcsak, Mark A. Musen
2015	J	`jnl`	A comparative analysis of the density of the SNOMED CT conceptual content for semantic harmonization. Artif. Intell. Medicine Zhe He, James Geller, Yan Chen
2015	—	`conf`	Assessing the Collective Population Representativeness of Related Type 2 Diabetes Trials by Combining Public Data from ClinicalTrials.gov and NHANES. MedInfo Zhe He, Shuang Wang, Elhaam Borhanian, Chunhua Weng
2015	Misc	`conf`	Similarity-Based Recommendation of New Concepts to a Terminology. AMIA Praveen Chandar Ravichandran, Anil Yaman, Julia Hoxha, Zhe He, Chunhua Weng
2015	Misc	`conf`	Simulation-based Evaluation of the Generalizability Index for Study Traits. AMIA Zhe He, Praveen Chandar Ravichandran, Patrick B. Ryan, Chunhua Weng
2015	J	`jnl`	Visual aggregate analysis of eligibility features of clinical trials. J. Biomed. Informatics Zhe He, Simona Carini, Ida Sim, Chunhua Weng
2014	Misc	`conf`	A Method for Analyzing Commonalities in Clinical Trial Target Populations. AMIA Zhe He, Simona Carini, Tianyong Hao, Ida Sim, Chunhua Weng
2014	—	`conf`	Trend and Network Analysis of Common Eligibility Features for Cancer Trials in ClinicalTrials.gov. ICSH Chunhua Weng, Anil Yaman, Kuo Lin, Zhe He
2013	Misc	`conf`	A Family-Based Framework for Supporting Quality Assurance of Biomedical Ontologies in BioPortal. AMIA Zhe He, Christopher Ochs, Ankur Agrawal, Yehoshua Perl, Dimitris Zeginis, Konstantinos A. Tarabanis, Gai Elhanan, Michael Halper, Natasha F. Noy, James Geller
2013	—	`conf`	Auditing Redundant Import in Reuse of a Top Level Ontology for the Drug Discovery Investigations Ontology. VDOS+DO@ICBO Zhe He, Christopher Ochs, Larisa N. Soldatova, Yehoshua Perl, Sivaram Arabandi, James Geller
2013	—	`conf`	Choosing the Granularity of Abstraction Networks for Orientation and Quality Assurance of the Sleep Domain Ontology. ICBO Christopher Ochs, Zhe He, Yehoshua Perl, Sivaram Arabandi, Michael Halper, James Geller
2013	J	`jnl`	Rule-based support system for multiple UMLS semantic type assignments. J. Biomed. Informatics James Geller, Zhe He, Yehoshua Perl, C. Paul Morrey, Julia Xu
2013	J	`jnl`	The readiness of SNOMED problem list concepts for meaningful use of electronic health records. Artif. Intell. Medicine Ankur Agrawal, Zhe He, Yehoshua Perl, Duo Helen Wei, Michael Halper, Gai Elhanan, Yan Chen
2012	—	`conf`	Clinical clarity versus terminological order: the readiness of SNOMED CT concept descriptors for primary care. MIX-HS Zhe He, Michael Halper, Yehoshua Perl, Gai Elhanan
2012	—	`conf`	Questionable relationship triples in the UMLS. BHI Huanying Gu, Gai Elhanan, Michael Halper, Zhe He