Zhaohui S. Qin

45 papers Misc 1Journal 38Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
A review on knowledge graphs for healthcare: Resources, applications, and promises.
J. Biomed. Informatics
Hejie Cui, Jiaying Lu, Ran Xu, Shiyu Wang, Wenjing Ma, Yue Yu, Shaojun Yu, Xuan Kan, Chen Ling, Liang Zhao, Zhaohui S. Qin, Joyce C. Ho, Tianfan Fu, Jing Ma, Mengdi Huai, Fei Wang, Carl Yang
2024 J jnl
A novel classification framework for genome-wide association study of whole brain MRI images using deep learning.
PLoS Comput. Biol.
Shaojun Yu, Junjie Wu, Yumeng Shao, Deqiang Qiu, Zhaohui S. Qin
2024 J jnl
Controllable Data Generation by Deep Learning: A Review.
ACM Comput. Surv.
Shiyu Wang, Yuanqi Du, Xiaojie Guo, Bo Pan, Zhaohui S. Qin, Liang Zhao
2023 J jnl
Editorial: AI and data science in drug development and public health: Highlights from the MCBIOS 2022 conference.
Frontiers Big Data
Ramin Homayouni, Prashanti Manda, Aik Choon Tan, Zhaohui S. Qin
2022 J jnl
Disease category-specific annotation of variants using an ensemble learning framework.
Briefings Bioinform.
Zhen Cao, Yanting Huang, Ran Duan, Peng Jin, Zhaohui S. Qin, Shihua Zhang
2022 J jnl
Guest Editorial for Selected Papers From BIOKDD 2021.
IEEE ACM Trans. Comput. Biol. Bioinform.
Da Yan, Zhaohui S. Qin, Debswapna Bhattacharya, Jake Y. Chen
2021 J jnl
A wonderful time - exciting progress made in the past 20 years in genetics powered by the Human Genome Project.
Quant. Biol.
Zhaohui S. Qin
2021 J jnl
Systematic Exploration in Tissue-Pathway Associations of Complex Traits Using Comprehensive eQTLs Catalog.
Frontiers Big Data
Boqi Wang, James Yang, Steven Qiu, Yongsheng Bai, Zhaohui S. Qin
2020 J jnl
A comprehensive review of computational prediction of genome-wide features.
Briefings Bioinform.
Tianlei Xu, Xiaoqi Zheng, Ben Li, Peng Jin, Zhaohui S. Qin, Hao Wu
2020 J jnl
Application of topic models to a compendium of ChIP-Seq datasets uncovers recurrent transcriptional regulatory modules.
Bioinform.
Guodong Yang, Aiqun Ma, Zhaohui S. Qin, Li Chen
2020 J jnl
Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model.
IEEE ACM Trans. Comput. Biol. Bioinform.
Rongrong Zhang, Ming Hu, Yu Zhu, Zhaohui S. Qin, Ke Deng, Jun S. Liu
2020 J jnl
Proceedings of the 2019 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform.
Jonathan D. Wren, Yongsheng Bai, Zhaohui S. Qin, Da Yan, Ramin Homayouni
2020 J jnl
Regulatory annotation of genomic intervals based on tissue-specific expression QTLs.
Bioinform.
Tianlei Xu, Peng Jin, Zhaohui S. Qin
2019 J jnl
RT States: systematic annotation of the human genome using cell type-specific replication timing programs.
Bioinform.
Axel Poulet, Ben Li, Tristan Dubos, Juan Carlos Rivera-Mulia, David M. Gilbert, Zhaohui S. Qin
2018 J jnl
Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval.
Database J. Biol. Databases Curation
Payam Karisani, Zhaohui S. Qin, Eugene Agichtein
2017 — conf
High Performance Merging of Massive Data from Genome-Wide Association Studies.
DMAH@VLDB
Xiaobo Sun, Fusheng Wang, Zhaohui S. Qin
2017 J jnl
Omicseq: a web-based search engine for exploring omics datasets.
Nucleic Acids Res.
Xiaobo Sun, William Stephen Pittard, Tianlei Xu, Li Chen, Michael E. Zwick, Xiaoqian Jiang, Fusheng Wang, Zhaohui S. Qin
2017 J jnl
Special collection of bioinformatics in the era of precision medicine.
Quant. Biol.
Zhaohui S. Qin
2016 J jnl
A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.
Bioinform.
Zheng Xu, Guosheng Zhang, Fulai Jin, Mengjie Chen, Terrence S. Furey, Patrick F. Sullivan, Zhaohui S. Qin, Ming Hu, Yun Li
2016 J jnl
Bayesian inference with historical data-based informative priors improves detection of differentially expressed genes.
Bioinform.
Ben Li, Zhaonan Sun, Qing He, Yu Zhu, Zhaohui S. Qin
2016 — conf
EGO: A Biomedical Ontology for Integrative Epigenome Representation and Analysis.
ICBO/BioCreative
Yongqun He, Zhaohui S. Qin, Jie Zheng
2016 J jnl
traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals.
Bioinform.
Li Chen, Zhaohui S. Qin
2015 J jnl
A novel statistical method for quantitative comparison of multiple ChIP-seq datasets.
Bioinform.
Li Chen, Chi Wang, Zhaohui S. Qin, Hao Wu
2015 J jnl
One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies.
PLoS Comput. Biol.
Shuai Yuan, H. Richard Johnston, Guosheng Zhang, Yun Li, Yi-Juan Hu, Zhaohui S. Qin
2013 J jnl
A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks.
BMC Syst. Biol.
Zuoshuang Xiang, Tingting Qin, Zhaohui S. Qin, Yongqun He
2013 J jnl
Bayesian Inference of Spatial Organizations of Chromosomes.
PLoS Comput. Biol.
Ming Hu, Ke Deng, Zhaohui S. Qin, Jesse R. Dixon, Siddarth Selvaraj, Jennifer Fang, Bing Ren, Jun S. Liu
2013 J jnl
Sparsely correlated hidden Markov models with application to genome-wide location studies.
Bioinform.
Hyungwon Choi, Damian Fermin, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin
2013 J jnl
Understanding spatial organizations of chromosomes via statistical analysis of Hi-C data.
Quant. Biol.
Ming Hu, Ke Deng, Zhaohui S. Qin, Jun S. Liu
2012 J jnl
HiCNorm: removing biases in Hi-C data via Poisson regression.
Bioinform.
Ming Hu, Ke Deng, Siddarth Selvaraj, Zhaohui S. Qin, Bing Ren, Jun S. Liu
2012 — conf
Read-mapping using personalized diploid reference genome for RNA sequencing data reduced bias for detecting allele-specific expression.
BIBM Workshops
Shuai Yuan, Zhaohui S. Qin
2012 J jnl
Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq.
Bioinform.
Ming Hu, Yu Zhu, Jeremy M. G. Taylor, Jun S. Liu, Zhaohui S. Qin
2010 J jnl
A Double-Layered Mixture Model for the Joint Analysis of DNA Copy Number and Gene Expression Data.
J. Comput. Biol.
Hyungwon Choi, Zhaohui S. Qin, Debashis Ghosh
2010 J jnl
HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data.
BMC Bioinform.
Zhaohui S. Qin, Jianjun Yu, Jincheng Shen, Christopher A. Maher, Ming Hu, Shanker Kalyana-Sundaram, Jindan Yu, Arul M. Chinnaiyan
2009 J jnl
Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.
Bioinform.
Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin
2008 J jnl
Data Analysis and Graphics Using R: An Example-Based Approach, Second Edition.: John Maindonald and John Braun.
Briefings Bioinform.
Zhaohui S. Qin
2007 J jnl
CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.
Bioinform.
Zuoshuang Xiang, Zhaohui S. Qin, Yongqun He
2006 J jnl
An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria.
Bioinform.
Zhaohui S. Qin, Shyam Gopalakrishnan, Gonçalo R. Abecasis
2006 J jnl
Clustering microarray gene expression data using weighted Chinese restaurant process.
Bioinform.
Zhaohui S. Qin
2006 Misc conf
TagSNP Selection Based on Pairwise LD Criteria and Power Analysis in Association Studies.
Pacific Symposium on Biocomputing
Shyam Gopalakrishnan, Zhaohui S. Qin
2005 J jnl
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms.
Bioinform.
Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun
2005 J jnl
High Throughput Screening of Co-Expressed Gene Pairs with Controlled False Discovery Rate (FDR) and Minimum Acceptable Strength (MAS).
J. Comput. Biol.
Dongxiao Zhu, Alfred O. Hero III, Zhaohui S. Qin, Anand Swaroop
2005 J jnl
Structural comparison of metabolic networks in selected single cell organisms.
BMC Bioinform.
Dongxiao Zhu, Zhaohui S. Qin
2003 — conf
Statistical Resynchronization and Detection of Periodic Transcripts.
CSB
Xin Lu, Wen Zhang, Zhaohui S. Qin, Jun S. Liu
2002 — conf
Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data.
Computational Methods for SNPs and Haplotype Inference
Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun
2002 — conf
Haplotype Inference and Its Application in Linkage Disequilibrium Mapping.
Computational Methods for SNPs and Haplotype Inference
Tianhua Niu, Xin Lu, Hosung Kang, Zhaohui S. Qin, Jun S. Liu