Zexian Liu

52 papers A* 1Journal 50Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Multi-objective k-way parallel hypergraph partitioning with proximal gradient algorithm.
Comput. Optim. Appl.
Yingying Li, Hongwei Liu, Hailong You, Zexian Liu, Fang Zhang
2026 J jnl
New primal-dual algorithm for convex-concave saddle point problems.
Commun. Nonlinear Sci. Numer. Simul.
Shuning Liu, Zexian Liu
2025 A* conf
3D Dental Model Segmentation with Geometrical Boundary Preserving.
CVPR
Shufan Xi, Zexian Liu, Junlin Chang, Hongyu Wu, Xiaogang Wang, Aimin Hao
2025 J jnl
3D Dental Model Segmentation with Geometrical Boundary Preserving.
CoRR
Shufan Xi, Zexian Liu, Junlin Chang, Hongyu Wu, Xiaogang Wang, Aimin Hao
2025 J jnl
A limited memory subspace minimization conjugate gradient algorithm for unconstrained optimization.
Optim. Lett.
Zexian Liu, Yu-Hong Dai, Hongwei Liu
2025 — conf
Dynamic Trading Strategies for Volatile Assets: A Hybrid GM-LSTM Model with Finite State Machine Optimization.
MLIC
Haoran Sun, Bohan Song, Meng Cong, Zeran Wang, Zexian Liu, Xueru Wang, Yujie Han, Xinqi Cui
2025 J jnl
Inferring kinase-phosphosite regulation from phosphoproteome-enriched cancer multi-omics datasets.
Briefings Bioinform.
Haoyang Cheng, Zhuoran Liang, Yijin Wu, Jiamin Hu, Bijin Cao, Zekun Liu, Bo Liu, Han Cheng, Zexian Liu
2024 J jnl
A New Subspace Minimization Conjugate Gradient Method for Unconstrained Minimization.
J. Optim. Theory Appl.
Zexian Liu, Yan Ni, Hongwei Liu, Wumei Sun
2024 J jnl
A nonmonotone accelerated proximal gradient method with variable stepsize strategy for nonsmooth and nonconvex minimization problems.
J. Glob. Optim.
Hongwei Liu, Ting Wang, Zexian Liu
2024 J jnl
An Efficient Subspace Minimization Conjugate Gradient Method for Solving Nonlinear Monotone Equations with Convex Constraints.
Axioms
Taiyong Song, Zexian Liu
2024 J jnl
An efficient inertial subspace minimization CG algorithm with convergence rate analysis for constrained nonlinear monotone equations.
J. Comput. Appl. Math.
Taiyong Song, Zexian Liu
2023 J jnl
A regularized limited memory subspace minimization conjugate gradient method for unconstrained optimization.
Numer. Algorithms
Wumei Sun, Hongwei Liu, Zexian Liu
2023 J jnl
dSCOPE: a software to detect sequences critical for liquid-liquid phase separation.
Briefings Bioinform.
Kai Yu, Zekun Liu, Haoyang Cheng, Shihua Li, Qingfeng Zhang, Jia Liu, Huai-Qiang Ju, Zhixiang Zuo, Qi Zhao, Shiyang Kang, Zexian Liu
2023 J jnl
iHypoxia: An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals.
Genom. Proteom. Bioinform.
Zexian Liu, Panqin Wang, Qingfeng Zhang, Shihua Li, Yuxin Zhang, Yutong Guo, Chongchong Jia, Tian Shao, Lin Li, Han Cheng, Zhenlong Wang
2023 J jnl
qPTM: an updated database for PTM dynamics in human, mouse, rat and yeast.
Nucleic Acids Res.
Kai Yu, Ye Wang, Yongqiang Zheng, Zekun Liu, Qingfeng Zhang, Siyu Wang, Qi Zhao, Xiaolong Zhang, Xiaoxing Li, Rui-Hua Xu, Zexian Liu
2022 J jnl
An efficient gradient method with approximately optimal stepsizes based on regularization models for unconstrained optimization.
RAIRO Oper. Res.
Zexian Liu, Wangli Chu, Hongwei Liu
2022 J jnl
DrugCVar: a platform for evidence-based drug annotation for genetic variants in cancer.
Bioinform.
Xiaolong Zhang, Zhikai Qian, Ye Wang, Qingfeng Zhang, Kai Yu, Yongqiang Zheng, Zekun Liu, Qi Zhao, Zexian Liu
2022 J jnl
Multi-modal optimization to identify personalized biomarkers for disease prediction of individual patients with cancer.
Briefings Bioinform.
Jing J. Liang, Zong-Wei Li, Cai-Tong Yue, Zhuo Hu, Han Cheng, Zexian Liu, Weifeng Guo
2022 J jnl
Several accelerated subspace minimization conjugate gradient methods based on regularization model and convergence rate analysis for nonconvex problems.
Numer. Algorithms
Wumei Sun, Hongwei Liu, Zexian Liu
2022 J jnl
Some modified fast iterative shrinkage thresholding algorithms with a new adaptive non-monotone stepsize strategy for nonsmooth and convex minimization problems.
Comput. Optim. Appl.
Hongwei Liu, Ting Wang, Zexian Liu
2022 J jnl
qPTMplants: an integrative database of quantitative post-translational modifications in plants.
Nucleic Acids Res.
Han Xue, Qingfeng Zhang, Panqin Wang, Bijin Cao, Chongchong Jia, Ben Cheng, Yuhua Shi, Weifeng Guo, Zhenlong Wang, Zexian Liu, Han Cheng
2021 J jnl
A Class of Accelerated Subspace Minimization Conjugate Gradient Methods.
J. Optim. Theory Appl.
Wumei Sun, Hongwei Liu, Zexian Liu
2021 J jnl
New subspace minimization conjugate gradient methods based on regularization model for unconstrained optimization.
Numer. Algorithms
Ting Zhao, Hongwei Liu, Zexian Liu
2021 J jnl
gutMEGA: a database of the human gut MEtaGenome Atlas.
Briefings Bioinform.
Qingfeng Zhang, Kai Yu, Shihua Li, Xiaolong Zhang, Qi Zhao, Xia Zhao, Zekun Liu, Han Cheng, Zexian Liu, Xiaoxing Li
2021 J jnl
iCAV: an integrative database of cancer-associated viruses.
Database J. Biol. Databases Curation
Bo Liu, Qingfeng Zhang, Jingou Wang, Shumin Cao, Zhiyuan Zhou, Zexian Liu, Han Cheng
2021 J jnl
iCysMod: an integrative database for protein cysteine modifications in eukaryotes.
Briefings Bioinform.
Panqin Wang, Qingfeng Zhang, Shihua Li, Ben Cheng, Han Xue, Zhen Wei, Tian Shao, Zexian Liu, Han Cheng, Zhenlong Wang
2020 J jnl
A new subspace minimization conjugate gradient method based on modified secant equation for unconstrained optimization.
Comput. Appl. Math.
Xinliu Diao, Hongwei Liu, Zexian Liu
2020 J jnl
An improved Dai-Kou conjugate gradient algorithm for unconstrained optimization.
Comput. Optim. Appl.
Zexian Liu, Hongwei Liu, Yu-Hong Dai
2020 J jnl
CrossICC: iterative consensus clustering of cross-platform gene expression data without adjusting batch effect.
Briefings Bioinform.
Qi Zhao, Yu Sun, Zekun Liu, Hongwan Zhang, Xingyang Li, Kaiyu Zhu, Zexian Liu, Jian Ren, Zhixiang Zuo
2020 J jnl
Deep learning based prediction of reversible HAT/HDAC-specific lysine acetylation.
Briefings Bioinform.
Kai Yu, Qingfeng Zhang, Zekun Liu, Yimeng Du, Xinjiao Gao, Qi Zhao, Han Cheng, Xiaoxing Li, Zexian Liu
2020 J jnl
Ubiquitinome Profiling Reveals the Landscape of Ubiquitination Regulation in Rice Young Panicles.
Genom. Proteom. Bioinform.
Liya Zhu, Han Cheng, Guoqing Peng, Shuansuo Wang, Zhiguo Zhang, Erdong Ni, Xiangdong Fu, Chuxiong Zhuang, Zexian Liu, Hai Zhou
2019 J jnl
A new subspace minimization conjugate gradient method based on tensor model for unconstrained optimization.
Int. J. Comput. Math.
Ting Wang, Zexian Liu, Hongwei Liu
2019 J jnl
A subspace minimization conjugate gradient method based on conic model for unconstrained optimization.
Comput. Appl. Math.
Yufei Li, Zexian Liu, Hongwei Liu
2019 J jnl
Accelerated augmented Lagrangian method for total variation minimization.
Comput. Appl. Math.
Zexian Liu, Hongwei Liu, Xiping Wang
2019 J jnl
An Efficient Barzilai-Borwein Conjugate Gradient Method for Unconstrained Optimization.
J. Optim. Theory Appl.
Hongwei Liu, Zexian Liu
2019 J jnl
An Efficient Gradient Method with Approximately Optimal Stepsize Based on Tensor Model for Unconstrained Optimization.
J. Optim. Theory Appl.
Zexian Liu, Hongwei Liu
2019 J jnl
An efficient adaptive three-term extension of the Hestenes-Stiefel conjugate gradient method.
Optim. Methods Softw.
Xiao-Liang Dong, Zexian Liu, Hong-Wei Liu, Xiang-Li Li
2019 J jnl
qPhos: a database of protein phosphorylation dynamics in humans.
Nucleic Acids Res.
Kai Yu, Qingfeng Zhang, Zekun Liu, Qi Zhao, Xiaolong Zhang, Yan Wang, Zi-Xian Wang, Ying Jin, Xiaoxing Li, Zexian Liu, Rui-Hua Xu
2018 J jnl
A new adaptive Barzilai and Borwein method for unconstrained optimization.
Optim. Lett.
Hongwei Liu, Zexian Liu, Xiaoliang Dong
2018 J jnl
A new subspace minimization conjugate gradient method with nonmonotone line search for unconstrained optimization.
Numer. Algorithms
Ming Li, Hongwei Liu, Zexian Liu
2018 J jnl
An efficient gradient method with approximate optimal stepsize for large-scale unconstrained optimization.
Numer. Algorithms
Zexian Liu, Hongwei Liu
2018 J jnl
Several efficient gradient methods with approximate optimal stepsizes for large scale unconstrained optimization.
J. Comput. Appl. Math.
Zexian Liu, Hongwei Liu
2015 J jnl
MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle.
Nucleic Acids Res.
Zhengnan Huang, Lili Ma, Yongbo Wang, Zhicheng Pan, Jian Ren, Zexian Liu, Yu Xue
2015 J jnl
dbPSP: a curated database for protein phosphorylation sites in prokaryotes.
Database J. Biol. Databases Curation
Zhicheng Pan, Bangshan Wang, Ying Zhang, Yongbo Wang, Shahid Ullah, Jian Ren, Zexian Liu, Yu Xue
2014 J jnl
CPLM: a database of protein lysine modifications.
Nucleic Acids Res.
Zexian Liu, Yongbo Wang, Tianshun Gao, Zhicheng Pan, Han Cheng, Qing Yang, Zhongyi Cheng, Anyuan Guo, Jian Ren, Yu Xue
2014 J jnl
EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases.
Nucleic Acids Res.
Yongbo Wang, Zexian Liu, Han Cheng, Tianshun Gao, Zhicheng Pan, Qing Yang, Anyuan Guo, Yu Xue
2014 J jnl
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs.
Nucleic Acids Res.
Qi Zhao, Yubin Xie, Yueyuan Zheng, Shuai Jiang, Wenzhong Liu, Weiping Mu, Zexian Liu, Yong Zhao, Yu Xue, Jian Ren
2014 J jnl
dbPPT: a comprehensive database of protein phosphorylation in plants.
Database J. Biol. Databases Curation
Han Cheng, Wankun Deng, Yongbo Wang, Jian Ren, Zexian Liu, Yu Xue
2013 J jnl
Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes.
Briefings Bioinform.
Zexian Liu, Jian Ren, Jun Cao, Jiang He, Xuebiao Yao, Changjiang Jin, Yu Xue
2013 J jnl
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation.
Nucleic Acids Res.
Tianshun Gao, Zexian Liu, Yongbo Wang, Han Cheng, Qing Yang, Anyuan Guo, Jian Ren, Yu Xue
2011 J jnl
CPLA 1.0: an integrated database of protein lysine acetylation.
Nucleic Acids Res.
Zexian Liu, Jun Cao, Xinjiao Gao, Yanhong Zhou, Longping Wen, Xiangjiao Yang, Xuebiao Yao, Jian Ren, Yu Xue
2010 J jnl
MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore.
Nucleic Acids Res.
Jian Ren, Zexian Liu, Xinjiao Gao, Changjiang Jin, Mingliang Ye, Hanfa Zou, Longping Wen, Zhaolei Zhang, Yu Xue, Xuebiao Yao