Zasha Weinberg

13 papers B 2Journal 8Unranked 2
YearRankTypeTitle / Venue / Authors
2021 J jnl
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.
Nucleic Acids Res.
Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg
2021 J jnl
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
Nucleic Acids Res.
Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov
2011 J jnl
Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations.
PLoS Comput. Biol.
Jonathan Perreault, Zasha Weinberg, Adam Roth, Olivia Popescu, Pascal Chartrand, Gerardo Ferbeyre, Ronald R. Breaker
2011 J jnl
R2R - software to speed the depiction of aesthetic consensus RNA secondary structures.
BMC Bioinform.
Zasha Weinberg, Ronald R. Breaker
2009 J jnl
Finding Non-Coding RNAs through genome-Scale Clustering.
J. Bioinform. Comput. Biol.
Huei-Hun Elizabeth Tseng, Zasha Weinberg, Jeremy Gore, Ronald R. Breaker, Walter L. Ruzzo
2008 B conf
Finding Non-coding RNAs Through Genome-Scale Clustering.
APBC
Huei-Hun Elizabeth Tseng, Zasha Weinberg, Jeremy Gore, Ronald R. Breaker, Walter L. Ruzzo
2007 J jnl
A Computational Pipeline for High- Throughput Discovery of
PLoS Comput. Biol.
Zizhen Yao, Jeffrey E. Barrick, Zasha Weinberg, Shane J. Neph, Ronald R. Breaker, Martin Tompa, Walter L. Ruzzo
2006 J jnl
CMfinder - a covariance model based RNA motif finding algorithm.
Bioinform.
Zizhen Yao, Zasha Weinberg, Walter L. Ruzzo
2006 J jnl
Sequence-based heuristics for faster annotation of non-coding RNA families.
Bioinform.
Zasha Weinberg, Walter L. Ruzzo
2005 — —
Accurate annotation of non-coding RNAs in practical time.
Zasha Weinberg
2004 — conf
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy.
ISMB/ECCB (Supplement of Bioinformatics)
Zasha Weinberg, Walter L. Ruzzo
2004 B conf
Faster genome annotation of non-coding RNA families without loss of accuracy.
RECOMB
Zasha Weinberg, Walter L. Ruzzo
2000 — conf
An Approximate Search Engine for Structural Databases.
SIGMOD Conference
Jason Tsong-Li Wang, Xiong Wang, Dennis E. Shasha, Bruce A. Shapiro, Kaizhong Zhang, Xinhuan Zheng, Qicheng Ma, Zasha Weinberg