Zamin Iqbal

13 papers C 2Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Ziplign: a simple-to-use interactive tool to compare bacterial genomes.
J. Open Source Softw.
Martin Hunt, Zamin Iqbal
2024 J jnl
CELEBRIMBOR: core and accessory genes from metagenomes.
Bioinform.
Joel Hellewell, Samuel T. Horsfield, Johanna von Wachsmann, Tatiana A. Gurbich, Robert D. Finn, Zamin Iqbal, Leah W. Roberts, John A. Lees
2022 J jnl
Benchmarking the empirical accuracy of short-read sequencing across the
Bioinform.
Maximillian G. Marin, Roger Vargas, Michael Harris, Brendan M. Jeffrey, L. Elaine Epperson, David Durbin, Michael Strong, Max Salfinger, Zamin Iqbal, Irada Akhundova, Sergo Vashakidze, Valeriu Crudu, Alex Rosenthal, Maha R. Farhat
2022 J jnl
ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads.
Bioinform.
Martin Hunt, Jeremy Swann, Bede Constantinides, Philip Fowler, Zamin Iqbal
2020 J jnl
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.
Bioinform.
Camille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi
2019 C conf
COBS: A Compact Bit-Sliced Signature Index.
SPIRE
Timo Bingmann, Phelim Bradley, Florian Gauger, Zamin Iqbal
2019 J jnl
COBS: a Compact Bit-Sliced Signature Index.
CoRR
Timo Bingmann, Phelim Bradley, Florian Gauger, Zamin Iqbal
2018 J jnl
Integrating long-range connectivity information into de Bruijn graphs.
Bioinform.
Isaac Turner, Kiran V. Garimella, Zamin Iqbal, Gil McVean
2018 J jnl
Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data.
Bioinform.
Yang Yang, Katherine E. Niehaus, Timothy M. Walker, Zamin Iqbal, A. Sarah Walker, Daniel J. Wilson, Tim E. A. Peto, Derrick W. Crook, E. Grace Smith, Tingting Zhu, David A. Clifton
2016 C conf
A Natural Encoding of Genetic Variation in a Burrows-Wheeler Transform to Enable Mapping and Genome Inference.
WABI
Sorina Maciuca, Carlos del Ojo Elias, Gil McVean, Zamin Iqbal
2016 J jnl
High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs.
PLoS Comput. Biol.
Alexander T. Dilthey, Pierre-Antoine Gourraud, Alexander J. Mentzer, Nezih Cereb, Zamin Iqbal, Gil McVean
2016 J jnl
Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data.
PLoS Comput. Biol.
John D. O'Brien, Zamin Iqbal, Jason P. Wendler, Lucas Amenga-Etego
2013 J jnl
High-throughput microbial population genomics using the Cortex variation assembler.
Bioinform.
Zamin Iqbal, Isaac Turner, Gil McVean