Zaida Luthey-Schulten

16 papers A 1Journal 12Unranked 3

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales. Parallel Comput. Melih Sener, Stuart Levy, John E. Stone, A. J. Christensen, Barry Isralewitz, Robert Patterson, Kalina Borkiewicz, Jeffrey Carpenter, C. Neil Hunter, Zaida Luthey-Schulten, Donna J. Cox
2020	J	`jnl`	An in-silico human cell model reveals the influence of spatial organization on RNA splicing. PLoS Comput. Biol. Zhaleh Ghaemi, Joseph R. Peterson, Martin Gruebele, Zaida Luthey-Schulten
2017	J	`jnl`	Population FBA predicts metabolic phenotypes in yeast. PLoS Comput. Biol. Piyush Labhsetwar, Marcelo C. R. Melo, John A. Cole, Zaida Luthey-Schulten
2016	—	`conf`	Evaluation of Emerging Energy-Efficient Heterogeneous Computing Platforms for Biomolecular and Cellular Simulation Workloads. IPDPS Workshops John E. Stone, Michael J. Hallock, James C. Phillips, Joseph R. Peterson, Zaida Luthey-Schulten, Klaus Schulten
2016	—	`conf`	Improving Reaction Kernel Performance in Lattice Microbes: Particle-Wise Propensities and Run-Time Generated Code. IPDPS Workshops Michael J. Hallock, Zaida Luthey-Schulten
2015	J	`jnl`	Spatially-resolved metabolic cooperativity within dense bacterial colonies. BMC Syst. Biol. John A. Cole, Lars Kohler, Jamila Hedhli, Zaida Luthey-Schulten
2014	J	`jnl`	Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations. Parallel Comput. Michael J. Hallock, John E. Stone, Elijah Roberts, Corey Fry, Zaida Luthey-Schulten
2013	J	`jnl`	Lattice microbes: High-performance stochastic simulation method for the reaction-diffusion master equation. J. Comput. Chem. Elijah Roberts, John E. Stone, Zaida Luthey-Schulten
2011	J	`jnl`	Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study. PLoS Comput. Biol. Elijah Roberts, Andrew T. Magis, Julio O. Ortiz, Wolfgang Baumeister, Zaida Luthey-Schulten
2009	A	`conf`	Long time-scale simulations of in vivo diffusion using GPU hardware. IPDPS Elijah Roberts, John E. Stone, Leonardo Sepulveda, Wen-mei W. Hwu, Zaida Luthey-Schulten
2006	J	`jnl`	MultiSeq: unifying sequence and structure data for evolutionary analysis. BMC Bioinform. Elijah Roberts, John Eargle, Dan Wright, Zaida Luthey-Schulten
2006	J	`jnl`	Visualizing the dual space of biological molecules. Comput. Biol. Chem. John Eargle, Zaida Luthey-Schulten
2004	J	`jnl`	Classical force field parameters for the heme prosthetic group of cytochrome c. J. Comput. Chem. Felix Autenrieth, Emad Tajkhorshid, Jérôme Baudry, Zaida Luthey-Schulten
2002	J	`jnl`	Folding funnels: The key to robust protein structure prediction. J. Comput. Chem. Corey Hardin, Michael P. Eastwood, Michael C. Prentiss, Zaida Luthey-Schulten, Peter G. Wolynes
2001	J	`jnl`	Evaluating protein structure-prediction schemes using energy landscape theory. IBM J. Res. Dev. Michael P. Eastwood, Corey Hardin, Zaida Luthey-Schulten, Peter G. Wolynes
1994	—	`conf`	A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure Recognition. HICSS (5) Richard A. Goldstein, Zaida Luthey-Schulten, Peter G. Wolynes