Zaid Al-Ars - RankMe

205 papers A* 1A 21B 9C 15Misc 11Journal 70Unranked 78

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	GenMPI: Cluster Scalable Variant Calling for Short/Long Reads Sequencing Data. IEEE Trans. Comput. Biol. Bioinform. Tanveer Ahmad, Joseph Schuchart, Zaid Al-Ars, Christoph Niethammer, José Gracia, H. Peter Hofstee
2025	J	`jnl`	FPGA Innovation Research in the Netherlands: Present Landscape and Future Outlook. CoRR Nikolaos Alachiotis, Sjoerd van den Belt, Steven van der Vlugt, Reinier van der Walle, Mohsen Safari, Bruno Endres Forlin, Tiziano De Matteis, Zaid Al-Ars, Roel Jordans, António J. Sousa de Almeida, Federico Corradi, Christiaan Baaij, Ana Lucia Varbanescu
2025	—	`conf`	GSST: Parallel string decompression at 191 GB/s on GPU. CHEOPS@EuroSys Robin Vonk, Joost Hoozemans, Zaid Al-Ars
2025	J	`jnl`	GSST: Parallel string decompression at 191 GB/s on GPU. ACM SIGOPS Oper. Syst. Rev. Robin Vonk, Joost Hoozemans, Zaid Al-Ars
2025	J	`jnl`	Low-Loss Space in Neural Networks is Continuous and Fully Connected. CoRR Yongding Tian, Zaid Al-Ars, Maksim Kitsak, H. Peter Hofstee
2025	J	`jnl`	SENMAP: Multi-objective data-flow mapping and synthesis for hybrid scalable neuromorphic systems. CoRR Prithvish Nembhani, Oliver Rhodes, Guangzhi Tang, Alexandra F. Dobrita, Yingfu Xu, Kanishkan Vadivel, Kevin Shidqi, Paul Detterer, Mario Konijnenburg, Gert-Jan van Schaik, Manolis Sifalakis, Zaid Al-Ars, Amirreza Yousefzadeh
2025	B	`conf`	SENMap: Multi-objective dataflow mapping & synthesis for hybrid scalable neuromorphic systems. IJCNN Prithvish Nembhani, Oliver Rhodes, Guangzhi Tang, Alexandra F. Dobrita, Yingfu Xu, Kanishkan Vadivel, Kevin Shidqi, Paul Detterer, Mario Konijnenburg, Gert-Jan van Schaik, Manolis Sifalakis, Zaid Al-Ars, Amirreza Yousefzadeh
2024	Misc	`conf`	Assessing the Requirements for Industry Relevant Quantum Computation. QCE Anna M. Krol, Marvin Erdmann, Ewan Munro, André Luckow, Zaid Al-Ars
2024	J	`jnl`	Fully Pipelined FPGA Acceleration of Binary Convolutional Neural Networks with Neural Architecture Search. J. Circuits Syst. Comput. Mengfei Ji, Zaid Al-Ars, Yuchun Chang, Baolin Zhang
2024	J	`jnl`	Hardware-Accelerator Design by Composition: Dataflow Component Interfaces With Tydi-Chisel. IEEE Trans. Very Large Scale Integr. Syst. Casper Cromjongh, Yongding Tian, H. Peter Hofstee, Zaid Al-Ars
2024	—	`conf`	Learning Structured Sparsity for Efficient Nanopore DNA Basecalling Using Delayed Masking. BCB Mees Frensel, Zaid Al-Ars, H. Peter Hofstee
2024	J	`jnl`	Leveraging Apache Arrow for Zero-copy, Zero-serialization Cluster Shared Memory. CoRR Philip Groet, Joost Hoozemans, Andreas Grapentin, Felix Eberhardt, Zaid Al-Ars, H. Peter Hofstee
2024	J	`jnl`	NASH: Neural Architecture Search for Hardware-Optimized Machine Learning Models. CoRR Mengfei Ji, Yuchun Chang, Baolin Zhang, Zaid Al-Ars
2024	J	`jnl`	NLICE: Synthetic Medical Record Generation for Effective Primary Healthcare Differential Diagnosis. CoRR Zaid Al-Ars, Obinna Agba, Zhuoran Guo, Christiaan Boerkamp, Ziyaad Jaber, Tareq Jaber
2024	B	`conf`	SENSIM: An Event-driven Parallel Simulator for Multi-core Neuromorphic Systems. IJCNN Prithvish Nembhani, Kanishkan Vadivel, Guangzhi Tang, Mohammad Tahghighi, Gert-Jan van Schaik, Manolis Sifalakis, Zaid Al-Ars, Amirreza Yousefzadeh
2024	J	`jnl`	TINA: Acceleration of Non-NN Signal Processing Algorithms Using NN Accelerators. CoRR Christiaan Boerkamp, Steven van der Vlugt, Zaid Al-Ars
2024	—	`conf`	Tina: Acceleration of Non-NN Signal Processing Algorithms Using NN Accelerators. MLSP Christiaan Boerkamp, Steven van der Vlugt, Zaid Al-Ars
2024	—	`conf`	Tywaves: A Typed Waveform Viewer for Chisel. NorCAS Raffaele Meloni, H. Peter Hofstee, Zaid Al-Ars
2024	J	`jnl`	Tywaves: A Typed Waveform Viewer for Chisel. CoRR Raffaele Meloni, H. Peter Hofstee, Zaid Al-Ars
2024	J	`jnl`	Vanishing Variance Problem in Fully Decentralized Neural-Network Systems. CoRR Yongding Tian, Zaid Al-Ars, Maksim Kitsak, H. Peter Hofstee
2023	—	`conf`	An Intermediate Representation for Composable Typed Streaming Dataflow Designs. VLDB Workshops Matthijs A. Reukers, Yongding Tian, Zaid Al-Ars, H. Peter Hofstee, Matthijs Brobbel, Johan Peltenburg, Jeroen van Straten
2023	J	`jnl`	An Intermediate Representation for Composable Typed Streaming Dataflow Designs. CoRR Matthijs A. Reukers, Yongding Tian, Zaid Al-Ars, H. Peter Hofstee, Matthijs Brobbel, Johan Peltenburg, Jeroen van Straten
2023	J	`jnl`	DFL: High-Performance Blockchain-Based Federated Learning. Distributed Ledger Technol. Res. Pract. Yongding Tian, Zhuoran Guo, Jiaxuan Zhang, Zaid Al-Ars
2023	Misc	`conf`	Efficient Parameterised Compilation for Hybrid Quantum Programming. QCE Anna M. Krol, Koen Mesman, Aritra Sarkar, Zaid Al-Ars
2023	C	`conf`	Learning-enabled multi-modal motion prediction in urban environments. IV Vinicius Trentin, Chenxu Ma, Jorge Villagra, Zaid Al-Ars
2023	J	`jnl`	Learning-enabled multi-modal motion prediction in urban environments. CoRR Vinicius Trentin, Chenxu Ma, Jorge Villagra, Zaid Al-Ars
2023	C	`conf`	NLICE: Synthetic Medical Record Generation for Effective Primary Healthcare Differential Diagnosis. BIBE Zaid Al-Ars, Obinna Agba, Zhuoran Guo, Christiaan Boerkamp, Ziyaad Jaber, Tareq Jaber
2023	—	`conf`	OctoRay: Framework for Scalable FPGA Cluster Acceleration of Python Big Data Applications. SC Workshops Zaid Al-Ars, Jakoba Petri-Koenig, Joost Hoozemans, Luc Dierick, H. Peter Hofstee
2023	J	`jnl`	SaLoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs. CoRR Seongyeon Park, Hajin Kim, Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee, Youngsok Kim, Jinho Lee
2023	—	`conf`	Tydi-Chisel: Collaborative and Interface-Driven Data-Streaming Accelerators. NorCAS Casper Cromjongh, Yongding Tian, H. Peter Hofstee, Zaid Al-Ars
2023	—	`conf`	Tydi-lang: A Language for Typed Streaming Hardware. SC Workshops Yongding Tian, Matthijs A. Reukers, Zaid Al-Ars, H. Peter Hofstee, Matthijs Brobbel, Johan Peltenburg, Jeroen van Straten
2022	J	`jnl`	A Toolchain for Streaming Dataflow Accelerator Designs for Big Data Analytics: Defining an IR for Composable Typed Streaming Dataflow Designs. CoRR Matthijs A. Reukers, H. Peter Hofstee, Zaid Al-Ars
2022	J	`jnl`	Benchmarking Apache Arrow Flight - A wire-speed protocol for data transfer, querying and microservices. CoRR Tanveer Ahmad, Zaid Al-Ars, H. Peter Hofstee
2022	J	`jnl`	BioDynaMo: a modular platform for high-performance agent-based simulation. Bioinform. Lukas Breitwieser, Ahmad Hesam, Jean de Montigny, Vasileios Vavourakis, Alexandros Iosif, Jack Jennings, Marcus Kaiser, Marco Manca, Alberto Di Meglio, Zaid Al-Ars, Fons Rademakers, Onur Mutlu, Roman Bauer
2022	C	`conf`	Communication-Efficient Cluster Scalable Genomics Data Processing Using Apache Arrow Flight. ISPDC Tanveer Ahmad, Chengxin Ma, Zaid Al-Ars, H. Peter Hofstee
2022	—	`conf`	Fidel: Reconstructing Private Training Samples from Weight Updates in Federated Learning. IOTSMS David Enthoven, Zaid Al-Ars
2022	A	`conf`	Improving Gradient Paths for Binary Convolutional Neural Networks. BMVC Baozhou Zhu, H. Peter Hofstee, Jinho Lee, Zaid Al-Ars
2022	—	`conf`	Memory-Disaggregated In-Memory Object Store Framework for Big Data Applications. IPDPS Workshops Robin Abrahamse, Ákos Hadnagy, Zaid Al-Ars
2022	J	`jnl`	Memory-Disaggregated In-Memory Object Store Framework for Big Data Applications. CoRR Robin Abrahamse, Ákos Hadnagy, Zaid Al-Ars
2022	—	`conf`	QKSA: Quantum Knowledge Seeking Agent. AGI Aritra Sarkar, Zaid Al-Ars, Koen Bertels
2022	J	`jnl`	QPack Scores: Quantitative performance metrics for application-oriented quantum computer benchmarking. CoRR Huub Donkers, Koen Mesman, Zaid Al-Ars, Matthias Möller
2022	A	`conf`	SALoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs. IPDPS Seongyeon Park, Hajin Kim, Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee, Youngsok Kim, Jinho Lee
2022	J	`jnl`	Towards an Automatic Diagnosis of Peripheral and Central Palsy Using Machine Learning on Facial Features. CoRR C. V. Vletter, H. L. Burger, Hani Alers, N. Sourlos, Zaid Al-Ars
2022	J	`jnl`	Tydi-lang: A Language for Typed Streaming Hardware. CoRR Yongding Tian, Matthijs A. Reukers, Zaid Al-Ars, H. Peter Hofstee, Matthijs Brobbel, Johan Peltenburg, Jeroen van Straten
2022	J	`jnl`	Tydi-lang: a language for typed streaming hardware - A manual for future Tydi-lang compiler developers. CoRR Yongding Tian, Zaid Al-Ars, H. Peter Hofstee
2021	—	`conf`	An Attention Module for Convolutional Neural Networks. ICANN (1) Baozhou Zhu, H. Peter Hofstee, Jinho Lee, Zaid Al-Ars
2021	J	`jnl`	An Attention Module for Convolutional Neural Networks. CoRR Baozhou Zhu, H. Peter Hofstee, Jinho Lee, Zaid Al-Ars
2021	A*	`conf`	AutoReCon: Neural Architecture Search-based Reconstruction for Data-free Compression. IJCAI Baozhou Zhu, H. Peter Hofstee, Johan Peltenburg, Jinho Lee, Zaid Al-Ars
2021	J	`jnl`	AutoReCon: Neural Architecture Search-based Reconstruction for Data-free Compression. CoRR Baozhou Zhu, H. Peter Hofstee, Johan Peltenburg, Jinho Lee, Zaid Al-Ars
2021	J	`jnl`	DFL: High-Performance Blockchain-Based Federated Learning. CoRR Yongding Tian, Zhuoran Guo, Jiaxuan Zhang, Zaid Al-Ars
2021	J	`jnl`	Design and management of image processing pipelines within CPS: Acquired experience towards the end of the FitOptiVis ECSEL Project. Microprocess. Microsystems Carlo Sau, Claudia Rinaldi, Luigi Pomante, Francesca Palumbo, Giacomo Valente, Tiziana Fanni, Marcos Martinez de Alejandro, Frank van der Linden, Twan Basten, Marc Geilen, Geran Peeren, Jirí Kadlec, Pekka Jääskeläinen, Lubomír Bulej, Francisco Barranco, Jukka Saarinen, Tero Säntti, Maria Katiuscia Zedda, Victor Sanchez, Shayan Tabatabaei Nikkhah, Dip Goswami, Guillermo Amat, Lukás Marsík, Mark van Helvoort, Luis Medina, Zaid Al-Ars, Ad de Beer
2021	J	`jnl`	Efficient decomposition of unitary matrices in quantum circuit compilers. CoRR Anna M. Krol, Aritra Sarkar, Imran Ashraf, Zaid Al-Ars, Koen Bertels
2021	—	`conf`	Energy Efficient Multistandard Decompressor ASIP. ICCDE Joost Hoozemans, Kati Tervo, Pekka Jääskeläinen, Zaid Al-Ars
2021	—	`conf`	FPGA Acceleration of Zstd Compression Algorithm. IPDPS Workshops Jianyu Chen, Maurice Daverveldt, Zaid Al-Ars
2021	J	`jnl`	Fidel: Reconstructing Private Training Samples from Weight Updates in Federated Learning. CoRR David Enthoven, Zaid Al-Ars
2021	—	`conf`	GPU Acceleration of 3D Agent-Based Biological Simulations. IPDPS Workshops Ahmad Hesam, Lukas Breitwieser, Fons Rademakers, Zaid Al-Ars
2021	J	`jnl`	GPU Acceleration of 3D Agent-Based Biological Simulations. CoRR Ahmad Hesam, Lukas Breitwieser, Fons Rademakers, Zaid Al-Ars
2021	J	`jnl`	Generating High-Performance FPGA Accelerator Designs for Big Data Analytics with Fletcher and Apache Arrow. J. Signal Process. Syst. Johan Peltenburg, Jeroen van Straten, Matthijs Brobbel, Zaid Al-Ars, H. Peter Hofstee
2021	J	`jnl`	QKSA: Quantum Knowledge Seeking Agent - resource-optimized reinforcement learning using quantum process tomography. CoRR Aritra Sarkar, Zaid Al-Ars, Harshitta Gandhi, Koen Bertels
2021	J	`jnl`	QPack: Quantum Approximate Optimization Algorithms as universal benchmark for quantum computers. CoRR Koen Mesman, Zaid Al-Ars, Matthias Möller
2021	—	`conf`	Tens of gigabytes per second JSON-to-Arrow conversion with FPGA accelerators. FPT Johan Peltenburg, Ákos Hadnagy, Matthijs Brobbel, Robert Morrow, Zaid Al-Ars
2021	—	`conf`	WhiskEras 2.0: Fast and Accurate Whisker Tracking in Rodents. SAMOS Petros Arvanitis, Jan-Harm L. F. Betting, Laurens W. J. Bosman, Zaid Al-Ars, Christos Strydis
2020	J	`jnl`	An Efficient High-Throughput LZ77-Based Decompressor in Reconfigurable Logic. J. Signal Process. Syst. Jian Fang, Jianyu Chen, Jinho Lee, Zaid Al-Ars, H. Peter Hofstee
2020	J	`jnl`	An Overview of Federated Deep Learning Privacy Attacks and Defensive Strategies. CoRR David Enthoven, Zaid Al-Ars
2020	—	`conf`	Battling the CPU Bottleneck in Apache Parquet to Arrow Conversion Using FPGA. FPT Johan Peltenburg, Lars T. J. van Leeuwen, Joost Hoozemans, Jian Fang, Zaid Al-Ars, H. Peter Hofstee
2020	J	`jnl`	BioDynaMo: an agent-based simulation platform for scalable computational biology research. CoRR Lukas Breitwieser, Ahmad Hesam, Jean de Montigny, Vasileios Vavourakis, Alexandros Iosif, Jack Jennings, Marcus Kaiser, Marco Manca, Alberto Di Meglio, Zaid Al-Ars, Fons Rademakers, Onur Mutlu, Roman Bauer
2020	C	`conf`	Design and management of image processing pipelines within CPS: 2 years of experience from the FitOptiVis ECSEL Project. DSD Luigi Pomante, Francesca Palumbo, Claudia Rinaldi, Giacomo Valente, Carlo Sau, Tiziana Fanni, Frank van der Linden, Twan Basten, Marc Geilen, Geran Peeren, Jirí Kadlec, Pekka Jääskeläinen, Marcos Martinez de Alejandro, Jukka Saarinen, Tero Säntti, Maria Katiuscia Zedda, Victor Sanchez, Dip Goswami, Zaid Al-Ars, Ad de Beer
2020	—	`conf`	Efficient GPU Acceleration for Computing Maximal Exact Matches in Long DNA Reads. ICBBB Nauman Ahmed, Koen Bertels, Zaid Al-Ars
2020	J	`jnl`	Exploring Complex Brain-Simulation Workloads on Multi-GPU Deployments. ACM Trans. Archit. Code Optim. Michiel A. van der Vlag, Georgios Smaragdos, Zaid Al-Ars, Christos Strydis
2020	J	`jnl`	GPU acceleration of Darwin read overlapper for de novo assembly of long DNA reads. BMC Bioinform. Nauman Ahmed, Tong Dong Qiu, Koen Bertels, Zaid Al-Ars
2020	B	`conf`	NASB: Neural Architecture Search for Binary Convolutional Neural Networks. IJCNN Baozhou Zhu, Zaid Al-Ars, H. Peter Hofstee
2020	J	`jnl`	NASB: Neural Architecture Search for Binary Convolutional Neural Networks. CoRR Baozhou Zhu, Zaid Al-Ars, H. Peter Hofstee
2020	J	`jnl`	Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework. BMC Genom. Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee
2020	C	`conf`	Parallelization of Variable Rate Decompression through Metadata. PDP Lennart Noordsij, Steven van der Vlugt, Mohamed A. Bamakhrama, Zaid Al-Ars, Peter Lindstrom
2020	J	`jnl`	Privacy-Preserving Object Detection & Localization Using Distributed Machine Learning: A Case Study of Infant Eyeblink Conditioning. CoRR Stefan Zwaard, Henk-Jan Boele, Hani Alers, Christos Strydis, Casey Lew-Williams, Zaid Al-Ars
2020	J	`jnl`	QuASeR - Quantum Accelerated De Novo DNA Sequence Reconstruction. CoRR Aritra Sarkar, Zaid Al-Ars, Koen Bertels
2020	J	`jnl`	Quantum Accelerated Estimation of Algorithmic Information. CoRR Aritra Sarkar, Zaid Al-Ars, Koen Bertels
2020	J	`jnl`	REAF: Reducing Approximation of Channels by Reducing Feature Reuse Within Convolution. IEEE Access Baozhou Zhu, Zaid Al-Ars, H. Peter Hofstee
2020	J	`jnl`	Real-Time Face and Landmark Localization for Eyeblink Detection. CoRR Paul Bakker, Henk-Jan Boele, Zaid Al-Ars, Christos Strydis
2020	J	`jnl`	SoFAr: Shortcut-based Fractal Architectures for Binary Convolutional Neural Networks. CoRR Baozhou Zhu, H. Peter Hofstee, Jinho Lee, Zaid Al-Ars
2020	—	`conf`	Stairway to Abstraction: an Iterative Algorithm for Whisker Detection in Video Frames. LASCAS Jan-Harm L. F. Betting, Vincenzo Romano, Laurens W. J. Bosman, Zaid Al-Ars, Chris I. De Zeeuw, Christos Strydis
2020	A	`conf`	Synthesis-Free, Flexible and Fast Hardware Library for Biophysically Plausible Neurosimulations. FPGA Rene Miedema, Georgios Smaragdos, Mario Negrello, Zaid Al-Ars, Matthias Möller, Christos Strydis
2020	A	`conf`	Towards Lossless Binary Convolutional Neural Networks Using Piecewise Approximation. ECAI Baozhou Zhu, Zaid Al-Ars, Wei Pan
2020	J	`jnl`	Towards Lossless Binary Convolutional Neural Networks Using Piecewise Approximation. CoRR Baozhou Zhu, Zaid Al-Ars, Wei Pan
2020	J	`jnl`	Tydi: An Open Specification for Complex Data Structures Over Hardware Streams. IEEE Micro Johan Peltenburg, Jeroen van Straten, Matthijs Brobbel, Zaid Al-Ars, H. Peter Hofstee
2020	J	`jnl`	flexHH: A Flexible Hardware Library for Hodgkin-Huxley-Based Neural Simulations. IEEE Access Rene Miedema, Georgios Smaragdos, Mario Negrello, Zaid Al-Ars, Matthias Möller, Christos Strydis
2019	Misc	`conf`	A Fine-Grained Parallel Snappy Decompressor for FPGAs Using a Relaxed Execution Model. FCCM Jian Fang, Jianyu Chen, Jinho Lee, Zaid Al-Ars, H. Peter Hofstee
2019	J	`jnl`	ALMARVI Execution Platform: Heterogeneous Video Processing SoC Platform on FPGA. J. Signal Process. Syst. Joost Hoozemans, Jeroen van Straten, Timo Viitanen, Aleksi Tervo, Jiri Kadlec, Zaid Al-Ars
2019	J	`jnl`	ALMARVI System Solution for Image and Video Processing in Healthcare, Surveillance and Mobile Applications. J. Signal Process. Syst. Zaid Al-Ars, Steven van der Vlugt, Pekka Jääskeläinen, Frank van der Linden
2019	J	`jnl`	An algorithm for DNA read alignment on quantum accelerators. CoRR Aritra Sarkar, Zaid Al-Ars, Carmen G. Almudéver, Koen Bertels
2019	J	`jnl`	Correction to: GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data. BMC Bioinform. Nauman Ahmed, Jonathan Levy, Shanshan Ren, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars
2019	J	`jnl`	Evaluation of the Impact of Technology Scaling on Delay Testing for Low-Cost AVS. J. Electron. Test. Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars
2019	B	`conf`	Fletcher: A Framework to Efficiently Integrate FPGA Accelerators with Apache Arrow. FPL Johan Peltenburg, Jeroen van Straten, Lars Wijtemans, Lars van Leeuwen, Zaid Al-Ars, H. Peter Hofstee
2019	J	`jnl`	Frame-based Programming, Stream-Based Processing for Medical Image Processing Applications. J. Signal Process. Syst. Joost Hoozemans, Rob de Jong, Steven van der Vlugt, Jeroen van Straten, Uttam Kumar Elango, Zaid Al-Ars
2019	J	`jnl`	GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data. BMC Bioinform. Nauman Ahmed, Jonathan Levy, Shanshan Ren, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars
2019	J	`jnl`	GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller. BMC Genom. Shanshan Ren, Nauman Ahmed, Koen Bertels, Zaid Al-Ars
2019	—	`conf`	Refine and Recycle: A Method to Increase Decompression Parallelism. ASAP Jian Fang, Jianyu Chen, Jinho Lee, Zaid Al-Ars, H. Peter Hofstee
2019	—	`conf`	Supporting Columnar In-memory Formats on FPGA: The Hardware Design of Fletcher for Apache Arrow. ARC Johan Peltenburg, Jeroen van Straten, Matthijs Brobbel, H. Peter Hofstee, Zaid Al-Ars
2019	—	`conf`	The FitOptiVis ECSEL project: highly efficient distributed embedded image/video processing in cyber-physical systems. CF Zaid Al-Ars, Twan Basten, Ad de Beer, Marc Geilen, Dip Goswami, Pekka Jääskeläinen, Jirí Kadlec, Marcos Martinez de Alejandro, Francesca Palumbo, Geran Peeren, Luigi Pomante, Frank van der Linden, Jukka Saarinen, Tero Säntti, Carlo Sau, Maria Katiuscia Zedda
2018	Misc	`conf`	A high-bandwidth snappy decompressor in reconfigurable logic: work-in-progress. CODES+ISSS Jian Fang, Jianyu Chen, Zaid Al-Ars, H. Peter Hofstee, Jan Hidders
2018	C	`conf`	An Efficient GPU-Based de Bruijn Graph Construction Algorithm for Micro-Assembly. BIBE Shanshan Ren, Nauman Ahmed, Koen Bertels, Zaid Al-Ars
2018	A	`conf`	An industrial case study of low cost adaptive voltage scaling using delay test patterns. DATE Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars
2018	C	`conf`	Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM. BIBE Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
2018	—	`conf`	Cost Effective Adaptive Voltage Scaling Using Path Delay Fault Testing. EWDTS Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars
2018	—	`conf`	Evaluating Auto-adaptation Methods for Fine-Grained Adaptable Processors. ARCS Joost Hoozemans, Jeroen van Straten, Zaid Al-Ars, Stephan Wong
2018	B	`conf`	GPU-based stochastic-gradient optimization for non-rigid medical image registration in time-critical applications. Image Processing Parag Bhosale, Marius Staring, Zaid Al-Ars, Floris F. Berendsen
2018	J	`jnl`	Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths. Comput. Biol. Chem. Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
2018	A	`conf`	Industrial evaluation of transition fault testing for cost effective offline adaptive voltage scaling. DATE Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars
2018	—	`conf`	Porting and Benchmarking of BWAKIT Pipeline on OpenPOWER Architecture. ISC Workshops Nagarajan Kathiresan, Rashid Al-Ali, Puthen V. Jithesh, Ganesan Narayanasamy, Zaid Al-Ars
2017	—	`conf`	GPU accelerated API for alignment of genomics sequencing data. BIBM Nauman Ahmed, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars
2017	C	`conf`	GPU-Accelerated GATK HaplotypeCaller with Load-Balanced Multi-Process Optimization. BIBE Shanshan Ren, Koen Bertels, Zaid Al-Ars
2017	C	`conf`	High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL. BIBE Ernst Houtgast, Vlad Mihai Sima, Zaid Al-Ars
2017	C	`conf`	Predictive Genome Analysis Using Partial DNA Sequencing Data. BIBE Nauman Ahmed, Koen Bertels, Zaid Al-Ars
2017	—	`conf`	Pushing Big Data into Accelerators: Can the JVM Saturate Our Hardware? ISC Workshops Johan Peltenburg, Ahmad Hesam, Zaid Al-Ars
2017	—	`conf`	SparkGA: A Spark Framework for Cost Effective, Fast and Accurate DNA Analysis at Scale. BCB Hamid Mushtaq, Frank Liu, Carlos Costa, Gang Liu, H. Peter Hofstee, Zaid Al-Ars
2017	C	`conf`	Streaming Distributed DNA Sequence Alignment Using Apache Spark. BIBE Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars
2017	—	`conf`	Towards real-time whisker tracking in rodents for studying sensorimotor disorders. SAMOS Yang Ma, Prajith Ramakrishnan Geethakumari, Georgios Smaragdos, Sander Lindeman, Vincenzo Romano, Mario Negrello, Ioannis Sourdis, Laurens W. J. Bosman, Chris I. De Zeeuw, Zaid Al-Ars, Christos Strydis
2017	—	`conf`	Using transition fault test patterns for cost effective offline performance estimation. DTIS Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars
2017	—	`conf`	VLIW-Based FPGA Computation Fabric with Streaming Memory Hierarchy for Medical Imaging Applications. ARC Joost Hoozemans, Rolf Heij, Jeroen van Straten, Zaid Al-Ars
2016	—	`conf`	A comparison of seed-and-extend techniques in modern DNA read alignment algorithms. BIBM Nauman Ahmed, Koen Bertels, Zaid Al-Ars
2016	J	`jnl`	An Efficient GPUAccelerated Implementation of Genomic Short Read Mapping with BWAMEM. SIGARCH Comput. Archit. News Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
2016	—	`conf`	Balancing High-Performance Parallelization and Accuracy in Canny Edge Detector. ARCS Valery Kritchallo, Billy Braithwaite, Erik Vermij, Koen Bertels, Zaid Al-Ars
2016	J	`jnl`	BrainFrame: A node-level heterogeneous accelerator platform for neuron simulations. CoRR Georgios Smaragdos, Georgios Chatzikonstantis, Rahul Kukreja, Harry Sidiropoulos, Dimitrios Rodopoulos, Ioannis Sourdis, Zaid Al-Ars, Christoforos Kachris, Dimitrios Soudris, Chris I. De Zeeuw, Christos Strydis
2016	A	`conf`	Challenges of using on-chip performance monitors for process and environmental variation compensation. DATE Mahroo Zandrahimi, Zaid Al-Ars, Philippe Debaud, Armand Castillejo
2016	—	`conf`	Exploration of alternative GPU implementations of the pair-HMMs forward algorithm. BIBM Shanshan Ren, Koen Bertels, Zaid Al-Ars
2016	—	`conf`	GPU-Accelerated BWA-MEM Genomic Mapping Algorithm Using Adaptive Load Balancing. ARCS Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
2016	—	`conf`	Industrial approaches for performance evaluation using on-chip monitors. IDT Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars
2016	—	`conf`	Maximizing systolic array efficiency to accelerate the PairHMM Forward Algorithm. BIBM Johan Peltenburg, Shanshan Ren, Zaid Al-Ars
2016	Misc	`conf`	Power-Efficient Accelerated Genomic Short Read Mapping on Heterogeneous Computing Platforms. FCCM Ernst Joachim Houtgast, Vlad Mihai Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars
2016	—	`conf`	Power-efficiency analysis of accelerated BWA-MEM implementations on heterogeneous computing platforms. ReConFig Ernst Joachim Houtgast, Vlad Mihai Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars
2015	A	`conf`	Accelerating complex brain-model simulations on GPU platforms. DATE Hoang Anh Du Nguyen, Zaid Al-Ars, Georgios Smaragdos, Christos Strydis
2015	—	`conf`	An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm. SAMOS Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
2015	—	`conf`	Calculation of worst-case execution time for multicore processors using deterministic execution. PATMOS Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
2015	—	`conf`	Cluster-based Apache Spark implementation of the GATK DNA analysis pipeline. BIBM Hamid Mushtaq, Zaid Al-Ars
2015	—	`conf`	FPGA acceleration of the pair-HMMs forward algorithm for DNA sequence analysis. BIBM Shanshan Ren, Vlad Mihai Sima, Zaid Al-Ars
2015	—	`conf`	Heterogeneous Hardware Accelerators with Hybrid Interconnect: An Automated Design Approach. ACOMP Cuong Pham-Quoc, Imran Ashraf, Zaid Al-Ars, Koen Bertels
2015	A	`conf`	Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm. ICCAD Nauman Ahmed, Vlad Mihai Sima, Ernst Houtgast, Koen Bertels, Zaid Al-Ars
2015	—	`conf`	Scalability Potential of BWA DNA Mapping Algorithm on Apache Spark. SIMBig Zaid Al-Ars, Hamid Mushtaq
2015	—	`conf`	Using VLIW softcore processors for image processing applications. SAMOS Joost Hoozemans, Stephan Wong, Zaid Al-Ars
2014	—	`conf`	A Survey on Low-Power Techniques for Single and Multicore Systems. ICCASA Mahroo Zandrahimi, Zaid Al-Ars
2014	—	`conf`	Automated Hybrid Interconnect Design for FPGA Accelerators Using Data Communication Profiling. IPDPS Workshops Cuong Pham-Quoc, Zaid Al-Ars, Koen Bertels
2014	J	`jnl`	Efficent and highly portable deterministic multithreading (DetLock). Computing Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
2013	—	`conf`	Accurate and efficient identification of worst-case execution time for multicore processors: A survey. IDT Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
2013	A	`conf`	Efficient software-based fault tolerance approach on multicore platforms. DATE Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
2013	—	`conf`	Fault tolerance on multicore processors using deterministic multithreading. IDT Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
2013	—	`conf`	Heterogeneous hardware accelerators interconnect: An overview. AHS Cuong Pham-Quoc, Zaid Al-Ars, Koen Bertels
2013	A	`conf`	Hybrid interconnect design for heterogeneous hardware accelerators. DATE Cuong Pham-Quoc, Jan Heisswolf, Stephan Werner, Zaid Al-Ars, Jürgen Becker, Koen Bertels
2013	—	`conf`	Reducing random-dopant fluctuation impact on core-speed and power variability in many-core platforms. IDT Sohaib Majzoub, Zaid Al-Ars, Said Hamdioui
2012	—	`conf`	A heuristic-based communication-aware hardware optimization approach in heterogeneous multicore systems. ReConFig Cuong Pham-Quoc, Zaid Al-Ars, Koen Bertels
2012	C	`conf`	A user-level library for fault tolerance on shared memory multicore systems. DDECS Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
2012	—	`conf`	DetLock: Portable and Efficient Deterministic Execution for Shared Memory Multicore Systems. SC Companion Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
2012	—	`conf`	Rule-based data communication optimization using quantitative communication profiling. FPT Cuong Pham-Quoc, Zaid Al-Ars, Koen Bertels
2011	—	`conf`	4-D parity codes for soft error correction in aerospace applications. IDT Muhammad Imran, Zaid Al-Ars, Georgi Gaydadjiev
2011	—	`conf`	A New Test Paradigm for Semiconductor Memories in the Nano-Era. Asian Test Symposium Said Hamdioui, Venkataraman Krishnaswami, Ijeoma Sandra Irobi, Zaid Al-Ars
2011	—	`conf`	GPU-accelerated protein sequence alignment. EMBC Laiq Hasan, Marijn Kentie, Zaid Al-Ars
2011	C	`conf`	Influence of parasitic memory effect on single-cell faults in SRAMs. DDECS Sandra Irobi, Zaid Al-Ars, Said Hamdioui, Michel Renovell
2011	B	`conf`	Memory Test Optimization for Parasitic Bit Line Coupling in SRAMs. ETS Sandra Irobi, Zaid Al-Ars, Said Hamdioui
2011	—	`conf`	Survey of fault tolerance techniques for shared memory multicore/multiprocessor systems. IDT Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
2011	—	`conf`	Testing for Parasitic Memory Effect in SRAMs. Asian Test Symposium Sandra Irobi, Zaid Al-Ars, Said Hamdioui, Claude Thibeault
2010	Misc	`conf`	Bit line coupling memory tests for single-cell fails in SRAMs. VTS Sandra Irobi, Zaid Al-Ars, Said Hamdioui
2010	A	`conf`	Detecting memory faults in the presence of bit line coupling in SRAM devices. ITC Sandra Irobi, Zaid Al-Ars, Said Hamdioui
2010	B	`conf`	INDEXYS, a Logical Step beyond GENESYS. SAFECOMP Andreas Eckel, Paul Milbredt, Zaid Al-Ars, Stefan Schneele, Bart Vermeulen, György Csertán, Christoph Scheerer, Neeraj Suri, Abdelmajid Khelil, Gerhard Fohler
2010	—	`conf`	Parasitic memory effect in CMOS SRAMs. IDT Sandra Irobi, Zaid Al-Ars, Michel Renovell
2010	—	`conf`	Performance and bandwidth optimization for biological sequence alignment. IDT Laiq Hasan, Zaid Al-Ars, Mottaqiallah Taouil, Koen Bertels
2009	—	`conf`	Fault Diagnosis Using Test Primitives in Random Access Memories. Asian Test Symposium Zaid Al-Ars, Said Hamdioui
2009	—	`conf`	New Algorithms for Address Decoder Delay Faults and Bit Line Imbalance Faults. Asian Test Symposium Ad J. van de Goor, Said Hamdioui, Georgi Nedeltchev Gaydadjiev, Zaid Al-Ars
2008	C	`conf`	Acceleration of Smith-Waterman using Recursive Variable Expansion. DSD Zubair Nawaz, Zaid Al-Ars, Koen Bertels, Mudassir Shabbir
2008	—	`conf`	Automating defects simulation and fault modeling for SRAMs. HLDVT Stefano Di Carlo, Paolo Prinetto, Alberto Scionti, Zaid Al-Ars
2008	A	`conf`	Defect Oriented Testing of the Strap Problem Under Process Variations in DRAMs. ITC Zaid Al-Ars, Said Hamdioui, Ad J. van de Goor, Georg Mueller
2008	J	`jnl`	Test Set Development for Cache Memory in Modern Microprocessors. IEEE Trans. Very Large Scale Integr. Syst. Zaid Al-Ars, Said Hamdioui, Georgi Gaydadjiev, Stamatis Vassiliadis
2007	C	`conf`	Manifestation of Precharge Faults in High Speed DRAM Devices. DDECS Zaid Al-Ars, Said Hamdioui, Georgi Gaydadjiev
2007	Misc	`conf`	Optimizing Test Length for Soft Faults in DRAM Devices. VTS Zaid Al-Ars, Said Hamdioui, Georgi Gaydadjiev
2007	B	`conf`	PPM Reduction on Embedded Memories in System on Chip. ETS Said Hamdioui, Zaid Al-Ars, Javier Jiménez, Jose Calero
2006	A	`conf`	DRAM-Specific Space of Memory Tests. ITC Zaid Al-Ars, Said Hamdioui, Ad J. van de Goor, Georgi Gaydadjiev, Jörg E. Vollrath
2006	J	`jnl`	Influence of Bit-Line Coupling and Twisting on the Faulty Behavior of DRAMs. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. Zaid Al-Ars, Said Hamdioui, Ad J. van de Goor, Sultan M. Al-Harbi
2006	J	`jnl`	Opens and Delay Faults in CMOS RAM Address Decoders. IEEE Trans. Computers Said Hamdioui, Zaid Al-Ars, Ad J. van de Goor
2006	A	`conf`	Space of DRAM fault models and corresponding testing. DATE Zaid Al-Ars, Said Hamdioui, Ad J. van de Goor
2005	A	`conf`	Framework for Fault Analysis and Test Generation in DRAMs. DATE Zaid Al-Ars, Said Hamdioui, Georg Mueller, Ad J. van de Goor
2005	—	`conf`	Impact of stresses on the fault coverage of memory tests. MTDT Said Hamdioui, Zaid Al-Ars, Ad J. van de Goor, Rob Wadsworth
2005	—	`conf`	Investigations of Faulty DRAM Behavior Using Electrical Simulation Versus an Analytical Approach. Asian Test Symposium Zaid Al-Ars, Said Hamdioui, Jörg E. Vollrath
2004	Misc	`conf`	Effects of Bit Line Coupling on the Faulty Behavior of DRAMs. VTS Zaid Al-Ars, Said Hamdioui, Ad J. van de Goor
2004	—	`conf`	Evaluation of Intra-Word Faults in Word-Oriented RAMs. Asian Test Symposium Said Hamdioui, John Delos Reyes, Zaid Al-Ars
2004	—	`conf`	Influence of Bit Line Twisting on the Faulty Behavior of DRAMs. MTDT Zaid Al-Ars, Martin Herzog, Ivo Schanstra, Ad J. van de Goor
2004	J	`jnl`	Linked faults in random access memories: concept, fault models, test algorithms, and industrial results. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. Said Hamdioui, Zaid Al-Ars, Ad J. van de Goor, Mike Rodgers
2004	A	`conf`	Soft Faults and the Importance of Stresses in Memory Testing. DATE Zaid Al-Ars, Ad J. van de Goor
2004	B	`conf`	Tests for address decoder delay faults in RAMs due to inter-gate opens. ETS Ad J. van de Goor, Said Hamdioui, Zaid Al-Ars
2004	—	`conf`	The Effectiveness of the Scan Test and Its New Variants. MTDT Ad J. van de Goor, Said Hamdioui, Zaid Al-Ars
2003	—	`conf`	A Fault Primitive Based Analysis of Linked Faults in RAMs. MTDT Zaid Al-Ars, Said Hamdioui, Ad J. van de Goor
2003	—	`conf`	Analyzing the Impact of Process Variations on DRAM Testing Using Border Resistance Traces. Asian Test Symposium Zaid Al-Ars, Ad J. van de Goor
2003	J	`jnl`	Dynamic Faults in Random-Access-Memories: Concept, Fault Models and Tests. J. Electron. Test. Said Hamdioui, Zaid Al-Ars, Ad J. van de Goor, Mike Rodgers
2003	—	`conf`	March SL: A Test For All Static Linked Memory Faults. Asian Test Symposium Said Hamdioui, Zaid Al-Ars, Ad J. van de Goor, Mike Rodgers
2003	A	`conf`	Optimizing Stresses for Testing DRAM Cell Defects Using Electrical Simulation. DATE Zaid Al-Ars, Ad J. van de Goor, Jens Braun, Detlev Richter
2003	J	`jnl`	Static and Dynamic Behavior of Memory Cell Array Spot Defects in Embedded DRAMs. IEEE Trans. Computers Zaid Al-Ars, Ad J. van de Goor
2003	—	`conf`	Systematic Memory Test Generation for DRAM Defects Causing Two Floating Nodes. MTDT Zaid Al-Ars, Ad J. van de Goor
2003	J	`jnl`	Test generation and optimization for DRAM cell defects using electrical simulation. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. Zaid Al-Ars, Ad J. van de Goor
2002	Misc	`conf`	Approximating Infinite Dynamic Behavior for DRAM Cell Defects. VTS Zaid Al-Ars, Ad J. van de Goor
2002	—	`conf`	DRAM Specific Approximation of the Faulty Behavior of Cell Defects. Asian Test Symposium Zaid Al-Ars, Ad J. van de Goor
2002	A	`conf`	Modeling Techniques and Tests for Partial Faults in Memory Devices. DATE Zaid Al-Ars, Ad J. van de Goor
2002	Misc	`conf`	Testing Static and Dynamic Faults in Random Access Memories. VTS Said Hamdioui, Zaid Al-Ars, Ad J. van de Goor
2001	—	`conf`	A Memory Specific Notation for Fault Modeling. Asian Test Symposium Zaid Al-Ars, Ad J. van de Goor, Jens Braun, Detlev Richter
2001	A	`conf`	Simulation based analysis of temperature effect on the faulty behavior of embedded DRAMs. ITC Zaid Al-Ars, Ad J. van de Goor, Jens Braun, Detlev Richter
2001	A	`conf`	Static and dynamic behavior of memory cell array opens and shorts in embedded DRAMs. DATE Zaid Al-Ars, Ad J. van de Goor
2001	—	`conf`	Transient Faults in DRAMs: Concepts, Analysis and Impact on Tests. MTDT Zaid Al-Ars, Ad J. van de Goor
2000	Misc	`conf`	Functional Memory Faults: A Formal Notation and a Taxonomy. VTS Ad J. van de Goor, Zaid Al-Ars
2000	—	`conf`	Impact of memory cell array bridges on the faulty behavior in embedded DRAMs. Asian Test Symposium Zaid Al-Ars, Ad J. van de Goor