Yves Moreau - RankMe

144 papers A* 6A 1B 8C 5Misc 1Journal 96Unranked 25

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Achieving well-informed decision-making in drug discovery: a comprehensive calibration study using neural network-based structure-activity models. J. Cheminformatics Hannah Rosa Friesacher, Ola Engkvist, Lewis H. Mervin, Yves Moreau, Adam Arany
2025	J	`jnl`	JINet: easy and secure private data analysis for everyone. BMC Bioinform. Giada Lalli, James Collier, Yves Moreau, Daniele Raimondi
2025	J	`jnl`	Personalized federated learning for predicting disability progression in multiple sclerosis using real-world routine clinical data. npj Digit. Medicine Ashkan Pirmani, Edward De Brouwer, Adam Arany, Martijn Oldenhof, Antoine Passemiers, Axel Faes, Tomas Kalincik, Serkan Ozakbas, Riadh Gouider, Barbara Willekens, Dana Horáková, Eva Kubala Havrdova, Francesco Patti, Alexandre Prat, Alessandra Lugaresi, Valentina Tomassini, Pierre Grammond, Elisabetta Cartechini, Izanne Roos, Cavit Boz, Raed Alroughani, Maria Pia Amato, Katherine Buzzard, Jeannette Lechner-Scott, Joana Guimarães, Claudio Solaro, Oliver Gerlach, Aysun Soysal, Jens Kuhle, Jose Luis Sanchez-Menoyo, Daniele Spitaleri, Tunde Csepany, Bart Van Wijmeersch, Radek Ampapa, Julie Prevost, Samia J. Khoury, Vincent Van Pesch, Nevin John, Davide Maimone, Bianca Weinstock-Guttman, Guy Laureys, Pamela McCombe, Yolanda Blanco, Ayse Altintas, Abdullah Al-Asmi, Justin Garber, Anneke van der Walt, Helmut Butzkueven, Koen de Gans, Csilla Rozsa, Bruce Taylor, Talal Al-Harbi, Attila Sas, Cecilia Rajda, Orla Gray, Danny Decoo, William M. Carroll, Allan G. Kermode, Marzena Fabis-Pedrini, Deborah Mason, Angel Perez-Sempere, Mihaela Simu, Neil Shuey, Bhim Singhal, Marija Cauchi, Todd A. Hardy, Sudarshini Ramanathan, Patrice Lalive, Carmen-Adella Sirbu, Stella Hughes, Tamara Castillo Trivino, Liesbet M. Peeters, Yves Moreau
2025	J	`jnl`	The specification game: rethinking the evaluation of drug response prediction for precision oncology. J. Cheminformatics Francesco Codicè, Corrado Pancotti, Cesare Rollo, Yves Moreau, Piero Fariselli, Daniele Raimondi
2024	J	`jnl`	Achieving Well-Informed Decision-Making in Drug Discovery: A Comprehensive Calibration Study using Neural Network-Based Structure-Activity Models. CoRR Hannah Rosa Friesacher, Ola Engkvist, Lewis H. Mervin, Yves Moreau, Adam Arany
2024	A*	`conf`	Atom-Level Optical Chemical Structure Recognition with Limited Supervision. CVPR Martijn Oldenhof, Edward De Brouwer, Adam Arany, Yves Moreau
2024	J	`jnl`	Atom-Level Optical Chemical Structure Recognition with Limited Supervision. CoRR Martijn Oldenhof, Edward De Brouwer, Adam Arany, Yves Moreau
2024	J	`jnl`	Federated Block-Term Tensor Regression for decentralised data analysis in healthcare. CoRR Axel Faes, Ashkan Pirmani, Yves Moreau, Liesbet M. Peeters
2024	J	`jnl`	JINet: easy and secure private data analysis for everyone. CoRR Giada Lalli, James Collier, Yves Moreau, Daniele Raimondi
2024	J	`jnl`	MELLODDY: Cross-pharma Federated Learning at Unprecedented Scale Unlocks Benefits in QSAR without Compromising Proprietary Information. J. Chem. Inf. Model. Wouter Heyndrickx, Lewis H. Mervin, Tobias Morawietz, Noé Sturm, Lukas Friedrich, Adam Zalewski, Anastasia Pentina, Lina Humbeck, Martijn Oldenhof, Ritsuya Niwayama, Peter Schmidtke, Nikolas Fechner, Jaak Simm, Adam Arany, Nicolas Drizard, Rama Jabal, Arina Afanasyeva, Regis Loeb, Shlok Verma, Simon Harnqvist, Matthew Holmes, Balazs Pejo, Maria Telenczuk, Nicholas Holway, Arne Dieckmann, Nicola Rieke, Friederike Zumsande, Djork-Arné Clevert, Michael Krug, Christopher N. Luscombe, Darren V. S. Green, Peter Ertl, Peter Antal, David Marcus, Nicolas Do Huu, Hideyoshi Fuji, Stephen D. Pickett, Gergely Ács, Eric Boniface, Bernd Beck, Yax Sun, Arnaud Gohier, Friedrich Rippmann, Ola Engkvist, Andreas H. Göller, Yves Moreau, Mathieu N. Galtier, Ansgar Schuffenhauer, Hugo Ceulemans
2024	J	`jnl`	MetDecode: methylation-based deconvolution of cell-free DNA for noninvasive multi-cancer typing. Bioinform. Antoine Passemiers, Stefania Tuveri, Dhanya Sudhakaran, Tatjana Jatsenko, Tina Laga, Kevin Punie, Sigrid Hatse, Sabine Tejpar, An Coosemans, Els Van Nieuwenhuysen, Dirk Timmerman, Giuseppe Floris, Anne-Sophie Van Rompuy, Xavier Sagaert, Antonia C. Testa, Daniela Ficherova, Daniele Raimondi, Frederic Amant, Liesbeth Lenaerts, Yves Moreau, Joris Robert Vermeesch
2024	—	`conf`	Model Based Clustering of Time Series Utilizing Expert ODEs. ICANN (4) András Formanek, Edward De Brouwer, Péter Antal, Yves Moreau, Adam Arany
2024	J	`jnl`	Smoothing unadjusted Langevin algorithms for nonsmooth composite potential functions. Appl. Math. Comput. Susan Ghaderi, Masoud Ahookhosh, Adam Arany, Alexander Skupin, Panagiotis Patrinos, Yves Moreau
2024	—	`conf`	Unlocking the Power of Real-World Data: A Framework for Sustainable Healthcare. MIE Ashkan Pirmani, Yves Moreau, Liesbet M. Peeters
2023	J	`jnl`	How good Neural Networks interpretation methods really are? A quantitative benchmark. CoRR Antoine Passemiers, Pietro Folco, Daniele Raimondi, Giovanni Birolo, Yves Moreau, Piero Fariselli
2023	A*	`conf`	Industry-Scale Orchestrated Federated Learning for Drug Discovery. AAAI Martijn Oldenhof, Gergely Ács, Balázs Pejó, Ansgar Schuffenhauer, Nicholas Holway, Noé Sturm, Arne Dieckmann, Oliver Fortmeier, Eric Boniface, Clément Mayer, Arnaud Gohier, Peter Schmidtke, Ritsuya Niwayama, Dieter Kopecky, Lewis H. Mervin, Prakash Chandra Rathi, Lukas Friedrich, András Formanek, Peter Antal, Jordon Rahaman, Adam Zalewski, Wouter Heyndrickx, Ezron Oluoch, Manuel Stößel, Michal Vanco, David Endico, Fabien Gelus, Thaïs de Boisfossé, Adrien Darbier, Ashley Nicollet, Matthieu Blottière, Maria Telenczuk, Van Tien Nguyen, Thibaud Martinez, Camille Boillet, Kelvin Moutet, Alexandre Picosson, Aurélien Gasser, Inal Djafar, Antoine Simon, Adam Arany, Jaak Simm, Yves Moreau, Ola Engkvist, Hugo Ceulemans, Camille Marini, Mathieu Galtier
2023	J	`jnl`	Nonlinear data fusion over Entity-Relation graphs for Drug-Target Interaction prediction. Bioinform. Eugenio Mazzone, Yves Moreau, Piero Fariselli, Daniele Raimondi
2023	A*	`conf`	Weakly Supervised Knowledge Transfer with Probabilistic Logical Reasoning for Object Detection. ICLR Martijn Oldenhof, Adam Arany, Yves Moreau, Edward De Brouwer
2023	J	`jnl`	Weakly Supervised Knowledge Transfer with Probabilistic Logical Reasoning for Object Detection. CoRR Martijn Oldenhof, Adam Arany, Yves Moreau, Edward De Brouwer
2022	—	`conf`	Augmenting THerapeutic Effectiveness Through Novel Analytics (ATHENA) - A Public and Private Partnership Project Funded by the Flemish Government (VLAIO). MIE Ploingarm Petsophonsakul, Ashkan Pirmani, Edward De Brouwer, Murat Akand, Wouter Botermans, Frank Van Der Aa, Joris Robert Vermeesch, Fritz Offner, Roel Wuyts, Yves Moreau, Ingrid Maes, Ines Blockx, Patricia Van Rompuy, Martine Lewi, Bart Vannieuwenhuyse
2022	J	`jnl`	Corrigendum to Longitudinal machine learning modeling of MS patient trajectories improves predictions of disability progression: [Computer Methods and Programs in Biomedicine, Volume 208, (September 2021) 106180]. Comput. Methods Programs Biomed. Edward De Brouwer, Thijs Becker, Yves Moreau, Eva Kubala Havrdova, Maria Trojano, Sara Eichau, Serkan Ozakbas, Marco Onofrj, Pierre Grammond, Jens Kuhle, Ludwig Kappos, Patrizia Sola, Elisabetta Cartechini, Jeannette Lechner-Scott, Raed Alroughani, Oliver Gerlach, Tomas Kalincik, Franco Granella, Francois Grand'Maison, Roberto Bergamaschi, Maria Jose Sa, Bart Van Wijmeersch, Aysun Soysal, Jose Luis Sanchez-Menoyo, Claudio Solaro, Cavit Boz, Gerardo Iuliano, Katherine Buzzard, Eduardo Aguera-Morales, Murat Terzi, Tamara Castillo Trivino, Daniele Spitaleri, Vincent Van Pesch, Vahid Shaygannejad, Fraser Moore, Celia Oreja Guevara, Davide Maimone, Riadh Gouider, Tunde Csepany, Cristina Ramo-Tello, Liesbet M. Peeters
2022	J	`jnl`	Editorial: Towards genome interpretation: Computational methods to model the genotype-phenotype relationship. Frontiers Bioinform. Daniele Raimondi, Gabriele Orlando, Nora Verplaetse, Piero Fariselli, Yves Moreau
2022	J	`jnl`	Fast and accurate inference of gene regulatory networks through robust precision matrix estimation. Bioinform. Antoine Passemiers, Yves Moreau, Daniele Raimondi
2022	J	`jnl`	Industry-Scale Orchestrated Federated Learning for Drug Discovery. CoRR Martijn Oldenhof, Gergely Ács, Balázs Pejó, Ansgar Schuffenhauer, Nicholas Holway, Noé Sturm, Arne Dieckmann, Oliver Fortmeier, Eric Boniface, Clément Mayer, Arnaud Gohier, Peter Schmidtke, Ritsuya Niwayama, Dieter Kopecky, Lewis H. Mervin, Prakash Chandra Rathi, Lukas Friedrich, András Formanek, Peter Antal, Jordon Rahaman, Adam Zalewski, Ezron Oluoch, Manuel Stößel, Michal Vanco, David Endico, Fabien Gelus, Thaïs de Boisfossé, Adrien Darbier, Ashley Nicollet, Matthieu Blottière, Maria Telenczuk, Van Tien Nguyen, Thibaud Martinez, Camille Boillet, Kelvin Moutet, Alexandre Picosson, Aurélien Gasser, Inal Djafar, Adam Arany, Jaak Simm, Yves Moreau, Ola Engkvist, Hugo Ceulemans, Camille Marini, Mathieu Galtier
2022	J	`jnl`	SparseChem: Fast and accurate machine learning model for small molecules. CoRR Adam Arany, Jaak Simm, Martijn Oldenhof, Yves Moreau
2022	A*	`conf`	Topological Graph Neural Networks. ICLR Max Horn, Edward De Brouwer, Michael Moor, Yves Moreau, Bastian Rieck, Karsten M. Borgwardt
2021	J	`jnl`	A novel method for data fusion over entity-relation graphs and its application to protein-protein interaction prediction. Bioinform. Daniele Raimondi, Jaak Simm, Adam Arany, Yves Moreau
2021	—	`conf`	Expressive Graph Informer Networks. LOD Jaak Simm, Adam Arany, Edward De Brouwer, Yves Moreau
2021	J	`jnl`	In silico prediction of in vitro protein liquid-liquid phase separation experiments outcomes with multi-head neural attention. Bioinform. Daniele Raimondi, Gabriele Orlando, Emiel Michiels, Donya Pakravan, Anna Bratek-Skicki, Ludo Van Den Bosch, Yves Moreau, Frederic Rousseau, Joost Schymkowitz
2021	A*	`conf`	Latent Convergent Cross Mapping. ICLR Edward De Brouwer, Adam Arany, Jaak Simm, Yves Moreau
2021	J	`jnl`	Longitudinal machine learning modeling of MS patient trajectories improves predictions of disability progression. Comput. Methods Programs Biomed. Edward De Brouwer, Thijs Becker, Yves Moreau, Eva Kubala Havrdova, Maria Trojano, Sara Eichau, Serkan Ozakbas, Marco Onofrj, Pierre Grammond, Jens Kuhle, Ludwig Kappos, Patrizia Sola, Elisabetta Cartechini, Jeannette Lechner-Scott, Raed Alroughani, Oliver Gerlach, Tomas Kalincik, Franco Granella, Francois Grand'Maison, Roberto Bergamaschi, Maria Jose Sa, Bart Van Wijmeersch, Aysun Soysal, Jose Luis Sanchez-Menoyo, Claudio Solaro, Cavit Boz, Gerardo Iuliano, Katherine Buzzard, Eduardo Aguera-Morales, Murat Terzi, Tamara Castillo Trivino, Daniele Spitaleri, Vincent Van Pesch, Vahid Shaygannejad, Fraser Moore, Celia Oreja Guevara, Davide Maimone, Riadh Gouider, Tunde Csepany, Cristina Ramo-Tello, Liesbet M. Peeters
2021	J	`jnl`	Self-Labeling of Fully Mediating Representations by Graph Alignment. CoRR Martijn Oldenhof, Adam Arany, Yves Moreau, Jaak Simm
2021	—	`conf`	Self-labeling of Fully Mediating Representations by Graph Alignment. BNAIC/BENELEARN Martijn Oldenhof, Adam Arany, Yves Moreau, Jaak Simm
2021	J	`jnl`	Splitting chemical structure data sets for federated privacy-preserving machine learning. J. Cheminformatics Jaak Simm, Lina Humbeck, Adam Zalewski, Noé Sturm, Wouter Heyndrickx, Yves Moreau, Bernd Beck, Ansgar Schuffenhauer
2021	J	`jnl`	Topological Graph Neural Networks. CoRR Max Horn, Edward De Brouwer, Michael Moor, Yves Moreau, Bastian Rieck, Karsten M. Borgwardt
2021	J	`jnl`	Two-level preconditioning for Ridge Regression. Numer. Linear Algebra Appl. Joris Tavernier, Jaak Simm, Karl Meerbergen, Yves Moreau
2020	J	`jnl`	A Central Limit Theorem for Martin-Löf Random Numbers. CoRR Anton Vuerinckx, Yves Moreau
2020	J	`jnl`	ChemGrapher: Optical Graph Recognition of Chemical Compounds by Deep Learning. CoRR Martijn Oldenhof, Adam Arany, Yves Moreau, Jaak Simm
2020	J	`jnl`	ChemGrapher: Optical Graph Recognition of Chemical Compounds by Deep Learning. J. Chem. Inf. Model. Martijn Oldenhof, Adam Arany, Yves Moreau, Jaak Simm
2020	J	`jnl`	Insight into the protein solubility driving forces with neural attention. PLoS Comput. Biol. Daniele Raimondi, Gabriele Orlando, Piero Fariselli, Yves Moreau
2020	J	`jnl`	Longitudinal modeling of MS patient trajectories improves predictions of disability progression. CoRR Edward De Brouwer, Thijs Becker, Yves Moreau, Eva Kubala Havrdova, Maria Trojano, Sara Eichau, Serkan Ozakbas, Marco Onofrj, Pierre Grammond, Jens Kuhle, Ludwig Kappos, Patrizia Sola, Elisabetta Cartechini, Jeannette Lechner-Scott, Raed Alroughani, Oliver Gerlach, Tomas Kalincik, Franco Granella, Francois Grand'Maison, Roberto Bergamaschi, Maria Jose Sa, Bart Van Wijmeersch, Aysun Soysal, Jose Luis Sanchez-Menoyo, Claudio Solaro, Cavit Boz, Gerardo Iuliano, Katherine Buzzard, Eduardo Aguera-Morales, Murat Terzi, Tamara Castillo Trivino, Daniele Spitaleri, Vincent Van Pesch, Vahid Shaygannej, Fraser Moore, Celia Oreja Guevara, Davide Maimone, Riadh Gouider, Tunde Csepany, Cristina Ramo-Tello, Liesbet M. Peeters
2020	J	`jnl`	Multilevel Gibbs Sampling for Bayesian Regression. CoRR Joris Tavernier, Jaak Simm, Adam Arany, Karl Meerbergen, Yves Moreau
2019	J	`jnl`	Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates. Bioinform. Gabriele Orlando, Daniele Raimondi, Francesco Tabaro, Francesco Codicè, Yves Moreau, Wim F. Vranken
2019	J	`jnl`	Fast semi-supervised discriminant analysis for binary classification of large data sets. Pattern Recognit. Joris Tavernier, Jaak Simm, Karl Meerbergen, Jörg Kurt Wegner, Hugo Ceulemans, Yves Moreau
2019	J	`jnl`	GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks. Bioinform. Thomas Moerman, Sara Aibar Santos, Carmen Bravo González-Blas, Jaak Simm, Yves Moreau, Jan Aerts, Stein Aerts
2019	A*	`conf`	GRU-ODE-Bayes: Continuous Modeling of Sporadically-Observed Time Series. NeurIPS Edward De Brouwer, Jaak Simm, Adam Arany, Yves Moreau
2019	J	`jnl`	GRU-ODE-Bayes: Continuous modeling of sporadically-observed time series. CoRR Edward De Brouwer, Jaak Simm, Adam Arany, Yves Moreau
2019	J	`jnl`	Graph Informer Networks for Molecules. CoRR Jaak Simm, Adam Arany, Edward De Brouwer, Yves Moreau
2019	—	`conf`	SMURFF: A High-Performance Framework for Matrix Factorization Methods. BNAIC/BENELEARN Tom Vander Aa, Imen Chakroun, Tom Ashby, Jaak Simm, Adam Arany, Yves Moreau, Thanh Le Van, José Felipe Golib Dzib, Jörg K. Wegner, Vladimir I. Chupakhin, Hugo Ceulemans, Roel Wuyts, Wilfried Verachtert
2018	J	`jnl`	Deep Ensemble Tensor Factorization for Longitudinal Patient Trajectories Classification. CoRR Edward De Brouwer, Jaak Simm, Adam Arany, Yves Moreau
2018	J	`jnl`	ECCB 2018: The 17th European Conference on Computational Biology. Bioinform. Artemis G. Hatzigeorgiou, Pantelis G. Bagos, Panayiotis V. Benos, Christoforos Nikolaou, Yves Moreau, Ioannis Kavakiotis
2018	J	`jnl`	Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information. Bioinform. Pooya Zakeri, Jaak Simm, Adam Arany, Sarah ElShal, Yves Moreau
2018	J	`jnl`	Multilevel preconditioning for Ridge Regression. CoRR Joris Tavernier, Jaak Simm, Karl Meerbergen, Yves Moreau
2018	J	`jnl`	Simulation of the propagation of a cylindrical shear wave : non linear and dissipative modelling. CoRR Denis Jeambrun, Yves Moreau, Jean-Louis Costaz, Jean-Pierre Tourret, Paul Jouanna, Gilles Lecoy
2018	J	`jnl`	Towards practical privacy-preserving genome-wide association study. BMC Bioinform. Charlotte Bonte, Eleftheria Makri, Amin Ardeshirdavani, Jaak Simm, Yves Moreau, Frederik Vercauteren
2018	J	`jnl`	Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping. Bioinform. Daniele Raimondi, Gabriele Orlando, Yves Moreau, Wim F. Vranken
2018	J	`jnl`	pBRIT: gene prioritization by correlating functional and phenotypic annotations through integrative data fusion. Bioinform. Ajay Anand Kumar, Lut Van Laer, Maaike Alaerts, Amin Ardeshirdavani, Yves Moreau, Kris Laukens, Bart Loeys, Geert Vandeweyer
2017	J	`jnl`	Fast semi-supervised discriminant analysis for binary classification of large data-sets. CoRR Joris Tavernier, Jaak Simm, Karl Meerbergen, Jörg K. Wegner, Hugo Ceulemans, Yves Moreau
2017	—	`conf`	Macau: Scalable Bayesian factorization with high-dimensional side information using MCMC. MLSP Jaak Simm, Adam Arany, Pooya Zakeri, Tom Haber, Jörg K. Wegner, Vladimir I. Chupakhin, Hugo Ceulemans, Yves Moreau
2017	J	`jnl`	Privacy-Preserving Genome-Wide Association Study is Practical. IACR Cryptol. ePrint Arch. Charlotte Bonte, Eleftheria Makri, Amin Ardeshirdavani, Jaak Simm, Yves Moreau, Frederik Vercauteren
2016	—	`conf`	A Comprehensive Comparison of Two MEDLINE Annotators for Disease and Gene Linkage: Sometimes Less is More. IWBBIO Sarah ElShal, Jaak Simm, Adam Arany, Pooya Zakeri, Jesse Davis, Yves Moreau
2016	J	`jnl`	Candidate gene prioritization with Endeavour. Nucleic Acids Res. Léon-Charles Tranchevent, Amin Ardeshirdavani, Sarah ElShal, Daniel Alcaide, Jan Aerts, Didier Auboeuf, Yves Moreau
2016	J	`jnl`	Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015. BMC Bioinform. Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Raju Nagarajan, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
2016	—	`conf`	Topic modeling of biomedical text. BIBM Sarah ElShal, Mithila Mathad, Jaak Simm, Jesse Davis, Yves Moreau
2015	J	`jnl`	Galahad: a web server for drug effect analysis from gene expression. Nucleic Acids Res. Griet Laenen, Amin Ardeshirdavani, Yves Moreau, Lieven Thorrez
2015	—	`conf`	Gene prioritization through geometric-inspired kernel data fusion. BIBM Pooya Zakeri, Sarah ElShal, Yves Moreau
2015	J	`jnl`	ISMB/ECCB 2015. Bioinform. Yves Moreau, Niko Beerenwinkel
2015	J	`jnl`	NGS-Logistics: data infrastructure for efficient analysis of NGS sequence variants across multiple centers. BMC Bioinform. Amin Ardeshirdavani, Erika L. Souche, Luc Dehaspe, Jeroen K. J. Van Houdt, Joris Robert Vermeesch, Yves Moreau
2015	J	`jnl`	Problems with the nested granularity of feature domains in bioinformatics: the eXtasy case. BMC Bioinform. Dusan Popovic, Alejandro Sifrim, Jesse Davis, Yves Moreau, Bart De Moor
2014	B	`conf`	A Self-Tuning Genetic Algorithm with Applications in Biomarker Discovery. CBMS Dusan Popovic, Charalampos N. Moschopoulos, Ryo Sakai, Alejandro Sifrim, Jan Aerts, Yves Moreau, Bart De Moor
2014	J	`jnl`	ECCB 2014: The 13 Bioinform. Marie-Dominique Devignes, Yves Moreau
2014	J	`jnl`	Easy Hyperparameter Search Using Optunity. CoRR Marc Claesen, Jaak Simm, Dusan Popovic, Yves Moreau, Bart De Moor
2014	—	`conf`	Gene interaction networks boost genetic algorithm performance in biomarker discovery. MCDM Charalampos N. Moschopoulos, Dusan Popovic, Rocco Langone, Johan A. K. Suykens, Bart De Moor, Yves Moreau
2014	J	`jnl`	Protein fold recognition using geometric kernel data fusion. Bioinform. Pooya Zakeri, Ben Jeuris, Raf Vandebril, Yves Moreau
2013	—	`conf`	A Genetic Algorithm for Pancreatic Cancer Diagnosis. EANN (2) Charalampos N. Moschopoulos, Dusan Popovic, Alejandro Sifrim, Grigorios N. Beligiannis, Bart De Moor, Yves Moreau
2013	—	`conf`	A Hybrid Approach to Feature Ranking for Microarray Data Classification. EANN (2) Dusan Popovic, Alejandro Sifrim, Charalampos N. Moschopoulos, Yves Moreau, Bart De Moor
2013	J	`jnl`	Unraveling genomic variation from next generation sequencing data. BioData Min. Georgios A. Pavlopoulos, Anastasis Oulas, Ernesto Iacucci, Alejandro Sifrim, Yves Moreau, Reinhard Schneider, Jan Aerts, Ioannis Iliopoulos
2013	—	`conf`	eXtasy simplified-towards opening the black box. BIBM Dusan Popovic, Alejandro Sifrim, Yves Moreau, Bart De Moor
2012	—	`conf`	A Simple Genetic Algorithm for Biomarker Mining. PRIB Dusan Popovic, Alejandro Sifrim, Georgios A. Pavlopoulos, Yves Moreau, Bart De Moor
2012	J	`jnl`	A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs. BMC Bioinform. Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau
2012	J	`jnl`	AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences. Int. J. Data Min. Bioinform. Joana P. Gonçalves, Yves Moreau, Sara C. Madeira
2012	J	`jnl`	An unbiased evaluation of gene prioritization tools. Bioinform. Daniela Börnigen, Léon-Charles Tranchevent, Francisco Bonachela Capdevila, Koenraad Devriendt, Bart De Moor, Patrick De Causmaecker, Yves Moreau
2012	C	`conf`	Applying Kernel Methods on Protein Complexes Detection Problem. EANN Charalampos N. Moschopoulos, Griet Laenen, George D. Kritikos, Yves Moreau
2012	J	`jnl`	Optimized Data Fusion for Kernel k-Means Clustering. IEEE Trans. Pattern Anal. Mach. Intell. Shi Yu, Léon-Charles Tranchevent, Xinhai Liu, Wolfgang Glänzel, Johan A. K. Suykens, Bart De Moor, Yves Moreau
2012	J	`jnl`	ReLiance: a machine learning and literature-based prioritization of receptor - ligand pairings. Bioinform. Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau
2012	—	`conf`	Towards Better Prioritization of Epigenetically Modified DNA Regions. SETN Ernesto Iacucci, Dusan Popovic, Georgios A. Pavlopoulos, Léon-Charles Tranchevent, Marijke Bauters, Bart De Moor, Yves Moreau
2011	J	`jnl`	A guide to web tools to prioritize candidate genes. Briefings Bioinform. Léon-Charles Tranchevent, Francisco Bonachela Capdevila, Daniela Nitsch, Bart De Moor, Patrick De Causmaecker, Yves Moreau
2011	—	`book`	Kernel-based Data Fusion for Machine Learning - Methods and Applications in Bioinformatics and Text Mining Shi Yu, Léon-Charles Tranchevent, Bart De Moor, Yves Moreau
2011	J	`jnl`	Optimized data fusion for K-means Laplacian clustering. Bioinform. Shi Yu, Xinhai Liu, Léon-Charles Tranchevent, Wolfgang Glänzel, Johan A. K. Suykens, Bart De Moor, Yves Moreau
2011	J	`jnl`	PINTA: a web server for network-based gene prioritization from expression data. Nucleic Acids Res. Daniela Nitsch, Léon-Charles Tranchevent, Joana P. Gonçalves, Josef Korbinian Vogt, Sara C. Madeira, Yves Moreau
2011	J	`jnl`	Predicting Receptor-Ligand Pairs through Kernel Learning. BMC Bioinform. Ernesto Iacucci, Fabian Ojeda, Bart De Moor, Yves Moreau
2010	J	`jnl`	Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases. Bioinform. Sylvain Brohée, Roland Barriot, Yves Moreau
2010	J	`jnl`	Candidate gene prioritization by network analysis of differential expression using machine learning approaches. BMC Bioinform. Daniela Nitsch, Joana P. Gonçalves, Fabian Ojeda, Bart De Moor, Yves Moreau
2010	J	`jnl`	Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape. BMC Bioinform. Kristof Theys, Koen Deforche, Gertjan Beheydt, Yves Moreau, Kristel Van Laethem, Philippe Lemey, Ricardo Camacho, Soo-Yon Rhee, Robert W. Shafer, Eric Van Wijngaerden, Anne-Mieke Vandamme
2010	J	`jnl`	Gene prioritization and clustering by multi-view text mining. BMC Bioinform. Shi Yu, Léon-Charles Tranchevent, Bart De Moor, Yves Moreau
2010	J	`jnl`	L2-norm multiple kernel learning and its application to biomedical data fusion. BMC Bioinform. Shi Yu, Tillmann Falck, Anneleen Daemen, Léon-Charles Tranchevent, Johan A. K. Suykens, Bart De Moor, Yves Moreau
2010	J	`jnl`	Large-scale benchmark of Endeavour using MetaCore maps. Bioinform. Sven Schuierer, Léon-Charles Tranchevent, Uwe Dengler, Yves Moreau
2010	—	`conf`	Network-Based Disease Candidate Gene Prioritization: Towards Global Diffusion in Heterogeneous Association Networks. NyNaK Joana P. Gonçalves, Sara C. Madeira, Yves Moreau
2010	—	`conf`	Towards Better Receptor-Ligand Prioritization: How Machine Learning on Protein-Protein Interaction Data Can Provide Insight Into Receptor-Ligand Pairs. ICANN (1) Ernesto Iacucci, Yves Moreau
2010	J	`jnl`	Weighted hybrid clustering by combining text mining and bibliometrics on a large-scale journal database. J. Assoc. Inf. Sci. Technol. Xinhai Liu, Shi Yu, Frizo A. L. Janssens, Wolfgang Glänzel, Yves Moreau, Bart De Moor
2009	J	`jnl`	An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH. BMC Bioinform. Joke Allemeersch, Steven Van Vooren, Femke Hannes, Bart De Moor, Joris Robert Vermeesch, Yves Moreau
2009	—	`conf`	Hybrid Clustering by Integrating Text and Citation Based Graphs in Journal Database Analysis. ICDM Workshops Xinhai Liu, Shi Yu, Yves Moreau, Frizo A. L. Janssens, Bart De Moor, Wolfgang Glänzel
2009	A	`conf`	Hybrid Clustering of Text Mining and Bibliometrics Applied to Journal Sets. SDM Xinhai Liu, Shi Yu, Yves Moreau, Bart De Moor, Wolfgang Glänzel, Frizo A. L. Janssens
2008	C	`conf`	Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining. ECCB Shi Yu, Steven Van Vooren, Léon-Charles Tranchevent, Bart De Moor, Yves Moreau
2008	J	`jnl`	ENDEAVOUR update: a web resource for gene prioritization in multiple species. Nucleic Acids Res. Léon-Charles Tranchevent, Roland Barriot, Shi Yu, Steven Van Vooren, Peter Van Loo, Bert Coessens, Bart De Moor, Stein Aerts, Yves Moreau
2008	J	`jnl`	Estimation of an Bioinform. Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Philippe Lemey, Andrew Rambaut, Yves Moreau, Anne-Mieke Vandamme
2007	J	`jnl`	CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes. BMC Bioinform. Gert Sclep, Joke Allemeersch, Robin Liechti, Björn De Meyer, Jim Beynon, Rishikesh Bhalerao, Yves Moreau, Wilfried Nietfeld, Jean-Pierre Renou, Philippe Reymond, Martin T. R. Kuiper, Pierre Hilson
2007	J	`jnl`	Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution J. Comput. Biol. Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Beth Shapiro, Yves Moreau, Andrew Rambaut, Anne-Mieke Vandamme, Philippe Lemey
2007	—	`conf`	Kernel-based data fusion for gene prioritization. ISMB/ECCB (Supplement of Bioinformatics) Tijl De Bie, Léon-Charles Tranchevent, Liesbeth M. M. van Oeffelen, Yves Moreau
2007	J	`jnl`	Query-driven module discovery in microarray data. Bioinform. Thomas Dhollander, Qizheng Sheng, Karen Lemmens, Bart De Moor, Kathleen Marchal, Yves Moreau
2006	J	`jnl`	Analysis of HIV-1 Bioinform. Koen Deforche, Tomi Silander, Ricardo Camacho, Zehava Grossman, M. A. Soares, Kristel Van Laethem, Rami Kantor, Yves Moreau, Anne-Mieke Vandamme
2006	—	`conf`	KSinBIT 2006 PC Co-chairs' Message. OTM Workshops (1) Maja Hadzic, Bart De Moor, Yves Moreau, Arek Kasprzyk
2006	—	`conf`	Ontology Guided Data Integration for Computational Prioritization of Disease Genes. OTM Workshops (1) Bert Coessens, Stijn Christiaens, Ruben Verlinden, Yves Moreau, Robert Meersman, Bart De Moor
2006	—	`conf`	Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks. ISMB (Supplement of Bioinformatics) Olivier Gevaert, Frank De Smet, Dirk Timmerman, Yves Moreau, Bart De Moor
2005	—	`ch.`	Advances in Cluster Analysis of Microarray Data. Data Analysis and Visualization in Genomics and Proteomics Qizheng Sheng, Yves Moreau, Frank De Smet, Kathleen Marchal, Bart De Moor
2005	J	`jnl`	BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinform. Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean R. Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber
2005	J	`jnl`	TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis. Nucleic Acids Res. Stein Aerts, Peter Van Loo, Gert Thijs, Herbert Mayer, Rainer de Martin, Yves Moreau, Bart De Moor
2005	J	`jnl`	arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays. BMC Bioinform. Björn Menten, Filip Pattyn, Katleen De Preter, Piet Robbrecht, Evi Michels, Karen Buysse, Geert Mortier, Anne De Paepe, Steven Van Vooren, Joris Robert Vermeesch, Yves Moreau, Bart De Moor, Stefan Vermeulen, Frank Speleman, Jo Vandesompele
2004	J	`jnl`	A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes. Bioinform. Stein Aerts, Peter Van Loo, Yves Moreau, Bart De Moor
2004	J	`jnl`	Importing MAGE-ML format microarray data into BioConductor. Bioinform. Steffen Durinck, Joke Allemeersch, Vincent Carey, Yves Moreau, Bart De Moor
2004	J	`jnl`	Using literature and data to learn Bayesian networks as clinical models of ovarian tumors. Artif. Intell. Medicine Peter Antal, Geert Fannes, Dirk Timmerman, Yves Moreau, Bart De Moor
2003	J	`jnl`	Bayesian applications of belief networks and multilayer perceptrons for ovarian tumor classification with rejection. Artif. Intell. Medicine Peter Antal, Geert Fannes, Dirk Timmerman, Yves Moreau, Bart De Moor
2003	C	`conf`	Biclustering microarray data by Gibbs sampling. ECCB Qizheng Sheng, Yves Moreau, Bart De Moor
2003	J	`jnl`	Bioinformatics: Organisms from Venus, Technology from Jupiter, Algorithms from Mars. Eur. J. Control Bart De Moor, Kathleen Marchal, Janick Mathys, Yves Moreau
2003	C	`conf`	Computational detection of cis-regulatory modules. ECCB Stein Aerts, Peter Van Loo, Gert Thijs, Yves Moreau, Bart De Moor
2003	Misc	`conf`	Evaluation of the Vector Space Representation in Text-Based Gene Clustering. Pacific Symposium on Biocomputing Patrick Glenisson, Peter Antal, Janick Mathys, Yves Moreau, Bart De Moor
2003	J	`jnl`	INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis. Nucleic Acids Res. Bert Coessens, Gert Thijs, Stein Aerts, Kathleen Marchal, Frank De Smet, Kristof Engelen, Patrick Glenisson, Yves Moreau, Janick Mathys, Bart De Moor
2003	—	`conf`	Text-Based Gene Profiling with Domain-Specific Views. SWDB Patrick Glenisson, Bert Coessens, Steven Van Vooren, Yves Moreau, Bart De Moor
2002	J	`jnl`	A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes. J. Comput. Biol. Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
2002	J	`jnl`	Adaptive quality-based clustering of gene expression profiles. Bioinform. Frank De Smet, Janick Mathys, Kathleen Marchal, Gert Thijs, Bart De Moor, Yves Moreau
2002	J	`jnl`	Functional bioinformatics of microarray data: from expression to regulation. Proc. IEEE Yves Moreau, Frank De Smet, Gert Thijs, Kathleen Marchal, Bart De Moor
2002	J	`jnl`	INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling. Bioinform. Gert Thijs, Yves Moreau, Frank De Smet, Janick Mathys, Magali Lescot, Stephane Rombauts, Pierre Rouzé, Bart De Moor, Kathleen Marchal
2002	J	`jnl`	PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts
2002	B	`conf`	Web-based Data Collection for Uterine Adnexal Tumors: A Case Study. CBMS Stein Aerts, Peter Antal, Dirk Timmerman, Bart De Moor, Yves Moreau
2001	B	`conf`	A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes. RECOMB Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
2001	J	`jnl`	A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinform. Gert Thijs, Magali Lescot, Kathleen Marchal, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
2001	B	`conf`	Extended Bayesian Regression Models: A Symbiotic Application of Belief Networks and Multilayer Perceptrons for the Classification of Ovarian Tumors. AIME Peter Antal, Geert Fannes, Bart De Moor, Joos Vandewalle, Yves Moreau, Dirk Timmerman
1999	B	`conf`	A hybrid system for fraud detection in mobile communications. ESANN Yves Moreau, Ellen Lerouge, Herman Verrelst, Joos Vandewalle, Christof Störmann, Peter Burge
1999	J	`jnl`	Embedding recurrent neural networks into predator-prey models. Neural Networks Yves Moreau, Stéphane Louiès, Joos Vandewalle, Léon Brenig
1998	B	`conf`	To stop learning using the evidence. ESANN Yves Moreau, Joos Vandewalle
1997	B	`conf`	Composition methods for the integration of dynamical neural networks. ESANN Yves Moreau, Joos Vandewalle
1997	C	`conf`	Detection of Mobile Phone Fraud Using Supervised Neural Networks: A First Prototype. ICANN Yves Moreau, Herman Verrelst, Joos Vandewalle
1997	—	`conf`	Use of a Multi-Layer Perceptron to Predict Malignancy in Ovarian Tumors. NIPS Herman Verrelst, Yves Moreau, Joos Vandewalle, Dirk Timmerman
1996	B	`conf`	Prediction of dynamical systems with composition networks. ESANN Yves Moreau, Joos Vandewalle