Yuzong Chen - RankMe

62 papers Journal 60Unranked 2

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Deep learning of 2D-Restructured gene expression representations for improved low-sample therapeutic response prediction. Comput. Biol. Medicine Kai Ping Cheng, Wan Xiang Shen, Yu Yang Jiang, Yan Chen, Yuzong Chen, Ying Tan
2023	J	`jnl`	DrugMAP: molecular atlas and pharma-information of all drugs. Nucleic Acids Res. Fengcheng Li, Jiayi Yin, Mingkun Lu, Minjie Mou, Zhaorong Li, Zhenyu Zeng, Ying Tan, Shanshan Wang, Xinyi Chu, Haibin Dai, Tingjun Hou, Su Zeng, Yuzong Chen, Feng Zhu
2023	J	`jnl`	Enhanced metagenomic deep learning for disease prediction and consistent signature recognition by restructured microbiome 2D representations. Patterns Wan Xiang Shen, Shu Ran Liang, Yu Yang Jiang, Yuzong Chen
2023	J	`jnl`	Infrared Spectral Analysis for Prediction of Functional Groups Based on Feature-Aggregated Deep Learning. J. Chem. Inf. Model. Tianyi Wang, Ying Tan, Yuzong Chen, Chunyan Tan
2023	J	`jnl`	NPASS database update 2023: quantitative natural product activity and species source database for biomedical research. Nucleic Acids Res. Hui Zhao, Yuan Yang, Shuaiqi Wang, Xue Yang, Kaicheng Zhou, Caili Xu, Xuyao Zhang, Jiajun Fan, Dongyue Hou, Xingxiu Li, Hanbo Lin, Ying Tan, Shanshan Wang, Xinyi Chu, Dongzhi Zhuoma, Fengying Zhang, Dianwen Ju, Xian Zeng, Yuzong Chen
2023	J	`jnl`	Toward ordered -omics data science: Researchers on the magic of turning metagenomic chaos into image-like patterns. Patterns Wan Xiang Shen, Yuzong Chen
2022	J	`jnl`	ConSIG: consistent discovery of molecular signature from OMIC data. Briefings Bioinform. Fengcheng Li, Jiayi Yin, Mingkun Lu, Qingxia Yang, Zhenyu Zeng, Bing Zhang, Zhaorong Li, Yunqing Qiu, Haibin Dai, Yuzong Chen, Feng Zhu
2022	J	`jnl`	Therapeutic target database update 2022: facilitating drug discovery with enriched comparative data of targeted agents. Nucleic Acids Res. Ying Zhou, Yintao Zhang, Xichen Lian, Fengcheng Li, Chaoxin Wang, Feng Zhu, Yunqing Qiu, Yuzong Chen
2021	J	`jnl`	Erratum to: LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor. Briefings Bioinform. Jing-Fang Yang, Fan Wang, Yuzong Chen, Ge-Fei Hao, Guangfu Yang
2021	J	`jnl`	Histopathology classification and localization of colorectal cancer using global labels by weakly supervised deep learning. Comput. Medical Imaging Graph. Changjiang Zhou, Yi Jin, Yuzong Chen, Shan Huang, Rengpeng Huang, Yuhong Wang, Youcai Zhao, Yao Chen, Lingchuan Guo, Jun Liao
2021	J	`jnl`	MASI: microbiota - active substance interactions database. Nucleic Acids Res. Xian Zeng, Xue Yang, Jiajun Fan, Ying Tan, Lingyi Ju, Wanxiang Shen, Yali Wang, Xinghao Wang, Weiping Chen, Dianwen Ju, Yuzong Chen
2021	J	`jnl`	Out-of-the-box deep learning prediction of pharmaceutical properties by broadly learned knowledge-based molecular representations. Nat. Mach. Intell. Wan Xiang Shen, Xian Zeng, Feng Zhu, Ya li Wang, Chu Qin, Ying Tan, Yu Yang Jiang, Yuzong Chen
2020	J	`jnl`	ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies. Briefings Bioinform. Jing Tang, Jianbo Fu, Yunxia Wang, Bo Li, Yinghong Li, Qingxia Yang, Xuejiao Cui, Jiajun Hong, Xiaofeng Li, Yuzong Chen, Weiwei Xue, Feng Zhu
2020	J	`jnl`	Clinical trials, progression-speed differentiating features and swiftness rule of the innovative targets of first-in-class drugs. Briefings Bioinform. Ying Hong Li, Xiao Xu Li, Jiajun Hong, Yunxia Wang, Jianbo Fu, Hong Yang, Chun Yan Yu, Feng Cheng Li, Jie Hu, Weiwei Xue, Yu Yang Jiang, Yuzong Chen, Feng Zhu
2020	J	`jnl`	Consistent gene signature of schizophrenia identified by a novel feature selection strategy from comprehensive sets of transcriptomic data. Briefings Bioinform. Qingxia Yang, Bo Li, Jing Tang, Xuejiao Cui, Yunxia Wang, Xiaofeng Li, Jie Hu, Yuzong Chen, Weiwei Xue, Yan Lou, Yunqing Qiu, Feng Zhu
2020	J	`jnl`	LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor. Briefings Bioinform. Jing-Fang Yang, Fan Wang, Yuzong Chen, Ge-Fei Hao, Guangfu Yang
2020	J	`jnl`	Therapeutic target database 2020: enriched resource for facilitating research and early development of targeted therapeutics. Nucleic Acids Res. Yunxia Wang, Song Zhang, Fengcheng Li, Ying Zhou, Ying Zhang, Zhengwen Wang, Runyuan Zhang, Jiang Zhu, Yuxiang Ren, Ying Tan, Chu Qin, Yinghong Li, Xiaoxu Li, Yuzong Chen, Feng Zhu
2019	J	`jnl`	CMAUP: a database of collective molecular activities of useful plants. Nucleic Acids Res. Xian Zeng, Peng Zhang, Yali Wang, Chu Qin, Shangying Chen, Weidong He, Lin Tao, Ying Tan, Dan Gao, Bo-hua Wang, Zhe Chen, Weiping Chen, Yu Yang Jiang, Yuzong Chen
2019	J	`jnl`	Clustering Bioactive Molecules in 3D Chemical Space with Unsupervised Deep Learning. CoRR Chu Qin, Ying Tan, Shangying Chen, Xian Zeng, Xingxing Qi, Tian Jin, Huan Shi, Yiwei Wan, Yu Chen, Jingfeng Li, Weidong He, Yali Wang, Peng Zhang, Feng Zhu, Hongping Zhao, Yu Yang Jiang, Yuzong Chen
2018	J	`jnl`	NPASS: natural product activity and species source database for natural product research, discovery and tool development. Nucleic Acids Res. Xian Zeng, Peng Zhang, Weidong He, Chu Qin, Shangying Chen, Lin Tao, Yali Wang, Ying Tan, Dan Gao, Bo-hua Wang, Zhe Chen, Weiping Chen, Yu Yang Jiang, Yuzong Chen
2018	J	`jnl`	Therapeutic target database update 2018: enriched resource for facilitating bench-to-clinic research of targeted therapeutics. Nucleic Acids Res. Ying Hong Li, Chun Yan Yu, Xiao Xu Li, Peng Zhang, Jing Tang, Qingxia Yang, Tingting Fu, Xiaoyu Zhang, Xuejiao Cui, Gao Tu, Yang Zhang, Shuang Li, Fengyuan Yang, Qiu Sun, Chu Qin, Xian Zeng, Zhe Chen, Yuzong Chen, Feng Zhu
2017	J	`jnl`	A protein network descriptor server and its use in studying protein, disease, metabolic and drug targeted networks. Briefings Bioinform. Peng Zhang, Lin Tao, Xian Zeng, Chu Qin, Shangying Chen, Feng Zhu, Zerong Li, Yu Yang Jiang, Weiping Chen, Yuzong Chen
2017	J	`jnl`	HEROD: a human ethnic and regional specific omics database. Bioinform. Xian Zeng, Lin Tao, Peng Zhang, Chu Qin, Shangying Chen, Weidong He, Ying Tan, Hong Xia Liu, Sheng-Yong Yang, Zhe Chen, Yu Yang Jiang, Yuzong Chen
2017	J	`jnl`	NOREVA: normalization and evaluation of MS-based metabolomics data. Nucleic Acids Res. Bo Li, Jing Tang, Qingxia Yang, Shuang Li, Xuejiao Cui, Yinghong Li, Yuzong Chen, Weiwei Xue, Xiaofeng Li, Feng Zhu
2016	J	`jnl`	Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information. Nucleic Acids Res. Hong Yang, Chu Qin, Ying Hong Li, Lin Tao, Jin Zhou, Chun Yan Yu, Feng Xu, Zhe Chen, Feng Zhu, Yuzong Chen
2015	J	`jnl`	CFam: a chemical families database based on iterative selection of functional seeds and seed-directed compound clustering. Nucleic Acids Res. Cheng Zhang, Lin Tao, Chu Qin, Peng Zhang, Shangying Chen, Xian Zeng, Feng Xu, Zhe Chen, Sheng-Yong Yang, Yuzong Chen
2014	J	`jnl`	A prediction model of drug-induced ototoxicity developed by an optimal support vector machine (SVM) method. Comput. Biol. Medicine Shu Zhou, Guo-Bo Li, Lu-Yi Huang, Huan-Zhang Xie, Ying-Lan Zhao, Yuzong Chen, Lin-Li Li, Sheng-Yong Yang
2014	J	`jnl`	Therapeutic target database update 2014: a resource for targeted therapeutics. Nucleic Acids Res. Chu Qin, Cheng Zhang, Feng Zhu, Feng Xu, Shangying Chen, Peng Zhang, Ying Hong Li, Sheng-Yong Yang, Yu-Quan Wei, Lin Tao, Yuzong Chen
2012	J	`jnl`	Prediction of human major histocompatibility complex class II binding peptides by continuous kernel discrimination method. Artif. Intell. Medicine Ju He, Guobing Yang, Hanbing Rao, Ze-Rong Li, Xianping Ding, Yuzong Chen
2012	J	`jnl`	Therapeutic target database update 2012: a resource for facilitating target-oriented drug discovery. Nucleic Acids Res. Feng Zhu, Zhe Shi, Chu Qin, Lin Tao, Xin Liu, Feng Xu, Li Zhang, Yang Song, Xianghui Liu, Jing-Xian Zhang, Bu-Cong Han, Peng Zhang, Yuzong Chen
2011	J	`jnl`	An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability. BMC Syst. Biol. XiaoNa Wei, Bu-Cong Han, Jing-Xian Zhang, X. H. Liu, C. Y. Tan, Yu Yang Jiang, Boon Chuan Low, Bruce Tidor, Yuzong Chen
2011	J	`jnl`	Effect of training data size and noise level on support vector machines virtual screening of genotoxic compounds from large compound libraries. J. Comput. Aided Mol. Des. Pankaj Kumar, Xiaohua Ma, Xianghui Liu, Jia Jia, Bu-Cong Han, Ying Xue, Ze-Rong Li, Sheng-Yong Yang, Yu-Quan Wei, Yuzong Chen
2011	J	`jnl`	HIT: linking herbal active ingredients to targets. Nucleic Acids Res. Hao Ye, Li Ye, Hong Kang, Duanfeng Zhang, Lin Tao, Kailin Tang, Xueping Liu, Ruixin Zhu, Qi Liu, Yuzong Chen, Yixue Li, Zhi-Wei Cao
2011	J	`jnl`	Update of PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. Nucleic Acids Res. H. B. Rao, F. Zhu, G. B. Yang, Z. R. Li, Yuzong Chen
2010	—	`conf`	Computational model of VEGF, thrombin and histamine signalling network. BIBM Workshops XiaoNa Wei, Yuzong Chen
2010	J	`jnl`	Identification of small molecule aggregators from large compound libraries by support vector machines. J. Comput. Chem. Hanbing Rao, Ze-Rong Li, Xiang-Yuan Li, Xiaohua Ma, Choong Yong Ung, Hu Li, Xianghui Liu, Yuzong Chen
2010	J	`jnl`	Update of TTD: Therapeutic Target Database. Nucleic Acids Res. Feng Zhu, Bu-Cong Han, Pankaj Kumar, Xianghui Liu, Xiaohua Ma, XiaoNa Wei, Lu Huang, Yangfan Guo, Lianyi Han, Chanjuan Zheng, Yuzong Chen
2009	J	`jnl`	Prediction of antibacterial compounds by machine learning approaches. J. Comput. Chem. Xue-Gang Yang, Duan Chen, Min Wang, Ying Xue, Yuzong Chen
2009	J	`jnl`	Simulation of DNA electrophoresis in systems of large number of solvent particles by coarse-grained hybrid molecular dynamics approach. J. Comput. Chem. Rong Wang, Jian-Sheng Wang, Gui-Rong Liu, Jongyoon Han, Yuzong Chen
2009	J	`jnl`	Simulation of crosstalk between small GTPase RhoA and EGFR-ERK signaling pathway via MEKK1. Bioinform. Hu Li, Choong Yong Ung, Xiao Hua Ma, Baowen Li, Boon Chuan Low, Zhi Wei Cao, Yuzong Chen
2009	J	`jnl`	Update of KDBI: Kinetic Data of Bio-molecular Interaction database. Nucleic Acids Res. Pankaj Kumar, Bu-Cong Han, Z. Shi, Jia Jia, Yupeng Wang, Y. T. Zhang, L. Liang, Q. F. Liu, Zhi Liang Ji, Yuzong Chen
2009	J	`jnl`	Virtual Screening of Abl Inhibitors from Large Compound Libraries by Support Vector Machines. J. Chem. Inf. Model. X. H. Liu, Xiao Hua Ma, C. Y. Tan, Yu Yang Jiang, M. L. Go, Boon Chuan Low, Yuzong Chen
2008	J	`jnl`	Evaluation of Virtual Screening Performance of Support Vector Machines Trained by Sparsely Distributed Active Compounds. J. Chem. Inf. Model. Xiao Hua Ma, R. Wang, S. Y. Yang, Z. R. Li, Ying Xue, Y. C. Wei, Boon Chuan Low, Yuzong Chen
2007	J	`jnl`	DITOP: drug-induced toxicity related protein database. Bioinform. Jing-Xian Zhang, Wei-Juan Huang, Jing-Hua Zeng, Wen-Hui Huang, Yi Wang, Rui Zhao, Bu-Cong Han, Qing-Feng Liu, Yuzong Chen, Zhi Liang Ji
2007	J	`jnl`	Efficacy of different protein descriptors in predicting protein functional families. BMC Bioinform. Serene A. K. Ong, Honghuang Lin, Yuzong Chen, Ze-Rong Li, Zhi Wei Cao
2007	J	`jnl`	PharmGED: Pharmacogenetic Effect Database. Nucleic Acids Res. C. J. Zheng, Lianyi Han, B. Xie, C. Y. Liew, Serene A. K. Ong, J. Cui, H. L. Zhang, Z. Q. Tang, S. H. Gan, L. Jiang, Yuzong Chen
2006	J	`jnl`	PEARLS: Program for Energetic Analysis of Receptor-Ligand System. J. Chem. Inf. Model. Lianyi Han, Honghuang Lin, Ze-Rong Li, C. J. Zheng, Zhi Wei Cao, B. Xie, Yuzong Chen
2006	J	`jnl`	PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. Nucleic Acids Res. Ze-Rong Li, Honghuang Lin, Lianyi Han, L. Jiang, X. Chen, Yuzong Chen
2006	—	`conf`	Prediction of Transmembrane Proteins from Their Primary Sequence by Support Vector Machine Approach. ICIC (3) Congzhong Cai, Qianfei Yuan, Hanguang Xiao, Xinghua Liu, Lianyi Han, Yuzong Chen
2006	J	`jnl`	Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach. BMC Bioinform. H. H. Lin, Lianyi Han, H. L. Zhang, C. J. Zheng, B. Xie, Zhi Wei Cao, Yuzong Chen
2005	J	`jnl`	Assessment of approximate string matching in a biomedical text retrieval problem. Comput. Biol. Medicine J. F. Wang, Z. R. Li, Congzhong Cai, Yuzong Chen
2005	J	`jnl`	Effect of Selection of Molecular Descriptors on the Prediction of Blood-Brain Barrier Penetrating and Nonpenetrating Agents by Statistical Learning Methods. J. Chem. Inf. Model. Hu Li, Chun Wei Yap, Choong Yong Ung, Ying Xue, Zhi Wei Cao, Yuzong Chen
2005	J	`jnl`	Prediction of Cytochrome P450 3A4, 2D6, and 2C9 Inhibitors and Substrates by Using Support Vector Machines. J. Chem. Inf. Model. Chun Wei Yap, Yuzong Chen
2004	J	`jnl`	Effect of Molecular Descriptor Feature Selection in Support Vector Machine Classification of Pharmacokinetic and Toxicological Properties of Chemical Agents. J. Chem. Inf. Model. Ying Xue, Ze-Rong Li, Chun Wei Yap, Li Zhi Sun, Xin Chen, Yuzong Chen
2004	J	`jnl`	MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids. Nucleic Acids Res. Zhi Wei Cao, Ying Xue, Lianyi Han, B. Xie, H. Zhou, C. J. Zheng, Honghuang Lin, Yuzong Chen
2004	J	`jnl`	Prediction of P-Glycoprotein Substrates by a Support Vector Machine Approach. J. Chem. Inf. Model. Ying Xue, Chun Wei Yap, Li Zhi Sun, Zhi Wei Cao, J. F. Wang, Yuzong Chen
2004	J	`jnl`	TRMP: a database of therapeutically relevant multiple pathways. Bioinform. C. J. Zheng, H. Zhou, B. Xie, Lianyi Han, Chun Wei Yap, Yuzong Chen
2003	J	`jnl`	KDBI: Kinetic Data of Bio-molecular Interactions database. Nucleic Acids Res. Zhi Liang Ji, X. Chen, C. J. Zheng, L. X. Yao, Lianyi Han, Wee Kiang Yeo, P. C. Chung, H. S. Puy, Y. T. Tay, A. Muhammad, Yuzong Chen
2003	J	`jnl`	SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic Acids Res. Congzhong Cai, Lianyi Han, Zhi Liang Ji, X. Chen, Yuzong Chen
2002	J	`jnl`	ADME-AP: a database of ADME associated proteins. Bioinform. Li Zhi Sun, Zhi Liang Ji, Xin Chen, J. F. Wang, Yuzong Chen
2002	J	`jnl`	CLiBE: A Database of Computed Ligand Binding Energy for Ligand-receptor Complexes. Comput. Chem. X. Chen, Zhi Liang Ji, D. G. Zhi, Yuzong Chen
2002	J	`jnl`	TTD: Therapeutic Target Database. Nucleic Acids Res. X. Chen, Zhi Liang Ji, Yuzong Chen