Yuying Xie

15 papers A* 3A 1Journal 11
YearRankTypeTitle / Venue / Authors
2024 A* conf
CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
ICLR
Hongzhi Wen, Wenzhuo Tang, Xinnan Dai, Jiayuan Ding, Wei Jin, Yuying Xie, Jiliang Tang
2024 J jnl
Clustering and visualization of single-cell RNA-seq data using path metrics.
PLoS Comput. Biol.
Andriana Manousidaki, Anna Little, Yuying Xie
2024 J jnl
Cross-Domain Graph Data Scaling: A Showcase with Diffusion Models.
CoRR
Wenzhuo Tang, Haitao Mao, Danial Dervovic, Ivan Brugere, Saumitra Mishra, Yuying Xie, Jiliang Tang
2024 J jnl
Deep Learning in Single-cell Analysis.
ACM Trans. Intell. Syst. Technol.
Dylan Molho, Jiayuan Ding, Wenzhuo Tang, Zhaoheng Li, Hongzhi Wen, Yixin Wang, Julian Venegas, Wei Jin, Renming Liu, Runze Su, Patrick Danaher, Robert Yang, Yu Leo Lei, Yuying Xie, Jiliang Tang
2024 J jnl
SpatialCTD: A Large-Scale Tumor Microenvironment Spatial Transcriptomic Dataset to Evaluate Cell Type Deconvolution for Immuno-Oncology.
J. Comput. Biol.
Jiayuan Ding, Lingxiao Li, Qiaolin Lu, Julian Venegas, Yixin Wang, Lidan Wu, Wei Jin, Hongzhi Wen, Renming Liu, Wenzhuo Tang, Xinnan Dai, Zhaoheng Li, Wangyang Zuo, Yi Chang, Yu Leo Lei, Lulu Shang, Patrick Danaher, Yuying Xie, Jiliang Tang
2023 J jnl
Single Cells Are Spatial Tokens: Transformers for Spatial Transcriptomic Data Imputation.
CoRR
Hongzhi Wen, Wenzhuo Tang, Wei Jin, Jiayuan Ding, Renming Liu, Feng Shi, Yuying Xie, Jiliang Tang
2023 A conf
Single-Cell Multimodal Prediction via Transformers.
CIKM
Wenzhuo Tang, Hongzhi Wen, Renming Liu, Jiayuan Ding, Wei Jin, Yuying Xie, Hui Liu, Jiliang Tang
2023 J jnl
Single-Cell Multimodal Prediction via Transformers.
CoRR
Wenzhuo Tang, Hongzhi Wen, Renming Liu, Jiayuan Ding, Wei Jin, Yuying Xie, Hui Liu, Jiliang Tang
2022 J jnl
Deep Learning in Single-Cell Analysis.
CoRR
Dylan Molho, Jiayuan Ding, Zhaoheng Li, Hongzhi Wen, Wenzhuo Tang, Yixin Wang, Julian Venegas, Wei Jin, Renming Liu, Runze Su, Patrick Danaher, Robert Yang, Yu Leo Lei, Yuying Xie, Jiliang Tang
2022 A* conf
Graph Neural Networks for Multimodal Single-Cell Data Integration.
KDD
Hongzhi Wen, Jiayuan Ding, Wei Jin, Yiqi Wang, Yuying Xie, Jiliang Tang
2022 J jnl
Graph Neural Networks for Multimodal Single-Cell Data Integration.
CoRR
Hongzhi Wen, Jiayuan Ding, Wei Jin, Yuying Xie, Jiliang Tang
2022 J jnl
Supervised capacity preserving mapping: a clustering guided visualization method for scRNA-seq data.
Bioinform.
Zhiqian Zhai, Yu L. Lei, Rongrong Wang, Yuying Xie
2019 J jnl
Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares.
PLoS Comput. Biol.
Yuning Hao, Ming Yan, Blake R. Heath, Yu L. Lei, Yuying Xie
2019 J jnl
Manifold Denoising by Nonlinear Robust Principal Component Analysis.
CoRR
He Lyu, Ningyu Sha, Shuyang Qin, Ming Yan, Yuying Xie, Rongrong Wang
2019 A* conf
Manifold denoising by Nonlinear Robust Principal Component Analysis.
NeurIPS
He Lyu, Ningyu Sha, Shuyang Qin, Ming Yan, Yuying Xie, Rongrong Wang