Yuyan Ni

26 papers A* 8Journal 15Unranked 3
YearRankTypeTitle / Venue / Authors
2025 — conf
Generalizable and Robust Phenotypic Drug Discovery.
CCIR
Xin Hong, Jiaxin Zheng, Xingsi Xie, Yinjun Jia, Yuyan Ni, Yanyan Lan
2025 J jnl
Straight-Line Diffusion Model for Efficient 3D Molecular Generation.
CoRR
Yuyan Ni, Shikun Feng, Haohan Chi, Bowen Zheng, Huan-ang Gao, Wei-Ying Ma, Zhi-Ming Ma, Yanyan Lan
2025 J jnl
Towards A Universally Transferable Acceleration Method for Density Functional Theory.
CoRR
Zhe Liu, Yuyan Ni, Zhichen Pu, Qiming Sun, Siyuan Liu, Wen Yan
2025 A* conf
UniGEM: A Unified Approach to Generation and Property Prediction for Molecules.
ICLR
Shikun Feng, Yuyan Ni, Yan Lu, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan
2024 A* conf
Beyond Efficiency: Molecular Data Pruning for Enhanced Generalization.
NeurIPS
Dingshuo Chen, Zhixun Li, Yuyan Ni, Guibin Zhang, Ding Wang, Qiang Liu, Shu Wu, Jeffrey Xu Yu, Liang Wang
2024 J jnl
Beyond Efficiency: Molecular Data Pruning for Enhanced Generalization.
CoRR
Dingshuo Chen, Zhixun Li, Yuyan Ni, Guibin Zhang, Ding Wang, Qiang Liu, Shu Wu, Jeffrey Xu Yu, Liang Wang
2024 J jnl
Contextual Molecule Representation Learning from Chemical Reaction Knowledge.
CoRR
Han Tang, Shikun Feng, Bicheng Lin, Yuyan Ni, Jingjing Liu, Wei-Ying Ma, Yanyan Lan
2024 A* conf
Multimodal Molecular Pretraining via Modality Blending.
ICLR
Qiying Yu, Yudi Zhang, Yuyan Ni, Shikun Feng, Yanyan Lan, Hao Zhou, Jingjing Liu
2024 J jnl
Pre-training with Fractional Denoising to Enhance Molecular Property Prediction.
CoRR
Yuyan Ni, Shikun Feng, Xin Hong, Yuancheng Sun, Wei-Ying Ma, Zhi-Ming Ma, Qiwei Ye, Yanyan Lan
2024 J jnl
Pre-training with fractional denoising to enhance molecular property prediction.
Nat. Mac. Intell.
Yuyan Ni, Shikun Feng, Xin Hong, Yuancheng Sun, Wei-Ying Ma, Zhi-Ming Ma, Qiwei Ye, Yanyan Lan
2024 A* conf
Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion.
ICML
Bowen Gao, Minsi Ren, Yuyan Ni, Yanwen Huang, Bo Qiang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan
2024 J jnl
Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion.
CoRR
Bowen Gao, Minsi Ren, Yuyan Ni, Yanwen Huang, Bo Qiang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan
2024 A* conf
Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment.
ICLR
Bowen Gao, Yinjun Jia, Yuanle Mo, Yuyan Ni, Wei-Ying Ma, Zhi-Ming Ma, Yanyan Lan
2024 A* conf
Sliced Denoising: A Physics-Informed Molecular Pre-Training Method.
ICLR
Yuyan Ni, Shikun Feng, Wei-Ying Ma, Zhi-Ming Ma, Yanyan Lan
2024 A* conf
UniCorn: A Unified Contrastive Learning Approach for Multi-view Molecular Representation Learning.
ICML
Shikun Feng, Yuyan Ni, Minghao Li, Yanwen Huang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan
2024 J jnl
UniCorn: A Unified Contrastive Learning Approach for Multi-view Molecular Representation Learning.
CoRR
Shikun Feng, Yuyan Ni, Minghao Li, Yanwen Huang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan
2024 J jnl
UniGEM: A Unified Approach to Generation and Property Prediction for Molecules.
CoRR
Shikun Feng, Yuyan Ni, Yan Lu, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan
2023 J jnl
Elastic Information Bottleneck.
CoRR
Yuyan Ni, Yanyan Lan, Ao liu, Zhiming Ma
2023 A* conf
Fractional Denoising for 3D Molecular Pre-training.
ICML
Shikun Feng, Yuyan Ni, Yanyan Lan, Zhi-Ming Ma, Wei-Ying Ma
2023 J jnl
Fractional Denoising for 3D Molecular Pre-training.
CoRR
Shikun Feng, Yuyan Ni, Yanyan Lan, Zhi-Ming Ma, Wei-Ying Ma
2023 J jnl
Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment.
CoRR
Bowen Gao, Yinjun Jia, Yuanle Mo, Yuyan Ni, Wei-Ying Ma, Zhiming Ma, Yanyan Lan
2023 J jnl
Sliced Denoising: A Physics-Informed Molecular Pre-Training Method.
CoRR
Yuyan Ni, Shikun Feng, Wei-Ying Ma, Zhi-Ming Ma, Yanyan Lan
2023 J jnl
Unified Molecular Modeling via Modality Blending.
CoRR
Qiying Yu, Yudi Zhang, Yuyan Ni, Shikun Feng, Yanyan Lan, Hao Zhou, Jingjing Liu
2013 — conf
R2RML Processor for Materializing RDF View of Relational Data: Algorithms and Experiments.
IEEE WISA
Shufeng Zhou, Zhuoming Xu, Yuyan Ni, Haifei Zhang
2012 J jnl
Automatic extraction of OWL ontologies from UML class diagrams: a semantics-preserving approach.
World Wide Web
Zhuoming Xu, Yuyan Ni, Wenjie He, Lili Lin, Qin Yan
2009 — conf
A Semantics-Preserving Approach for Extracting OWL Ontologies from UML Class Diagrams.
FGIT-DTA
Zhuoming Xu, Yuyan Ni, Lili Lin, Huajian Gu