Yushi Luan - RankMe

31 papers Misc 1Journal 21Unranked 9

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Attention-augmented multi-domain cooperative graph representation learning for molecular interaction prediction. Neural Networks Zhaowei Wang, Jun Meng, Haibin Li, Qiguo Dai, Xiaohui Lin, Yushi Luan
2024	—	`conf`	A Prompt and Contrastive Learning-Based Model for Plant Antimicrobial Peptide Prediction. ICAI (1) Zhaojing Qin, Jun Meng, Haibin Li, Youwei Tang, Yushi Luan
2024	J	`jnl`	DeepPepPI: A deep cross-dependent framework with information sharing mechanism for predicting plant peptide-protein interactions. Expert Syst. Appl. Zhaowei Wang, Jun Meng, Qiguo Dai, Haibin Li, Shihao Xia, Ruirui Yang, Yushi Luan
2024	J	`jnl`	miPEPPred-FRL: A Novel Method for Predicting Plant MiRNA-Encoded Peptides Using Adaptive Feature Representation Learning. J. Chem. Inf. Model. Haibin Li, Jun Meng, Zhaowei Wang, Youwei Tang, Shihao Xia, Yu Wang, Zhaojing Qin, Yushi Luan
2023	—	`conf`	A multi-granularity information-enhanced pre-training method for predicting the coding potential of sORFs in plant lncRNAs. BIBM Shihao Xia, Jun Meng, Zhaowei Wang, Yu Wang, Haibin Li, Zhaojing Qin, Yushi Luan
2023	J	`jnl`	Identification of small open reading frames in plant lncRNA using class-imbalance learning. Comput. Biol. Medicine Siyuan Zhao, Jun Meng, Jael Sanyanda Wekesa, Yushi Luan
2023	J	`jnl`	PAMPred: A hierarchical evolutionary ensemble framework for identifying plant antimicrobial peptides. Comput. Biol. Medicine Zhaowei Wang, Jun Meng, Haibin Li, Shihao Xia, Yu Wang, Yushi Luan
2023	—	`conf`	TGAAL: Combining Transformer-based GAN and active learning to identify the coding potential of sORFs in plant lncRNAs. BIBM Yu Wang, Jun Meng, Shihao Xia, Haibin Li, Zhaowei Wang, Yushi Luan
2022	J	`jnl`	Identifying LncRNA-Encoded Short Peptides Using Optimized Hybrid Features and Ensemble Learning. IEEE ACM Trans. Comput. Biol. Bioinform. Siyuan Zhao, Jun Meng, Qiang Kang, Yushi Luan
2022	J	`jnl`	Mining plant endogenous target mimics from miRNA-lncRNA interactions based on dual-path parallel ensemble pruning method. Briefings Bioinform. Qiang Kang, Jun Meng, Chenglin Su, Yushi Luan
2022	—	`conf`	Predicting the interactions between plant lncRNA-encoded peptide and protein using domain knowledge-based prototypical network. BIBM Siyuan Zhao, Jun Meng, Yushi Luan
2022	J	`jnl`	RNAI-FRID: novel feature representation method with information enhancement and dimension reduction for RNA-RNA interaction. Briefings Bioinform. Qiang Kang, Jun Meng, Yushi Luan
2021	J	`jnl`	Optimized combination methods for exploring and verifying disease-resistant transcription factors in melon. Briefings Bioinform. Zhicheng Wang, Yushi Luan, Xiaoxu Zhou, Jun Cui, Feishi Luan, Jun Meng
2021	J	`jnl`	PRPI-SC: an ensemble deep learning model for predicting plant lncRNA-protein interactions. BMC Bioinform. Haoran Zhou, Jael Sanyanda Wekesa, Yushi Luan, Jun Meng
2021	J	`jnl`	PlncRNA-HDeep: plant long noncoding RNA prediction using hybrid deep learning based on two encoding styles. BMC Bioinform. Jun Meng, Qiang Kang, Zheng Chang, Yushi Luan
2021	J	`jnl`	Predicting Protein Functions Based on Differential Co-expression and Neighborhood Analysis. J. Comput. Biol. Jael Sanyanda Wekesa, Yushi Luan, Jun Meng
2020	—	`conf`	LPI-DL: A recurrent deep learning model for plant lncRNA-protein interaction and function prediction with feature optimization. BIBM Jael Sanyanda Wekesa, Yushi Luan, Jun Meng
2020	J	`jnl`	PmliPred: a method based on hybrid model and fuzzy decision for plant miRNA-lncRNA interaction prediction. Bioinform. Qiang Kang, Jun Meng, Jun Cui, Yushi Luan, Ming Chen
2019	—	`conf`	Prediction of Plant lncRNA-Protein Interactions Using Sequence Information Based on Deep Learning. ICIC (3) Haoran Zhou, Yushi Luan, Jael Sanyanda Wekesa, Jun Meng
2019	—	`conf`	lncRNA-LSTM: Prediction of Plant Long Non-coding RNAs Using Long Short-Term Memory Based on p-nts Encoding. ICIC (3) Jun Meng, Zheng Chang, Peng Zhang, Wenhao Shi, Yushi Luan
2018	J	`jnl`	Ensemble classification for gene expression data based on parallel clustering. Int. J. Data Min. Bioinform. Jun Meng, Dingling Jiang, Jing Zhang, Yushi Luan
2018	—	`conf`	Prediction of LncRNA by Using Muitiple Feature Information Fusion and Feature Selection Technique. ICIC (2) Jun Meng, Dingling Jiang, Zheng Chang, Yushi Luan
2017	—	`conf`	Genome-Wide Analysis of Response Regulator Genes in Solanum lycopersicum. ISBRA Jun Cui, Ning Jiang, Jun Meng, Yushi Luan
2017	J	`jnl`	Parallel gene selection and dynamic ensemble pruning based on Affinity Propagation. Comput. Biol. Medicine Jun Meng, Jing Zhang, Yushi Luan, Xinyu He, Li-Shuang Li, Yuan-Feng Zhu
2016	J	`jnl`	Classifier ensemble selection based on affinity propagation clustering. J. Biomed. Informatics Jun Meng, Han Hao, Yushi Luan
2016	J	`jnl`	Plant miRNA function prediction based on functional similarity network and transductive multi-label classification algorithm. Neurocomputing Jun Meng, Guan-Li Shi, Yushi Luan
2015	J	`jnl`	Gene Selection Integrated with Biological Knowledge for Plant Stress Response Using Neighborhood System and Rough Set Theory. IEEE ACM Trans. Comput. Biol. Bioinform. Jun Meng, Jing Zhang, Yushi Luan
2015	J	`jnl`	Inferring plant microRNA functional similarity using a weighted protein-protein interaction network. BMC Bioinform. Jun Meng, Dong Liu, Yushi Luan
2014	J	`jnl`	Gene selection using rough set based on neighborhood for the analysis of plant stress response. Appl. Soft Comput. Jun Meng, Jing Zhang, Rui Li, Yushi Luan
2014	J	`jnl`	Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine. BMC Bioinform. Jun Meng, Dong Liu, Chao Sun, Yushi Luan
2013	Misc	`conf`	Protein function prediction based on physiochemical properties and protein granularity. GrC Wanlu Wang, Xin Zhang, Jun Meng, Yushi Luan