Yury V. Kondrakhin

17 papers A 2Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
BioUML - towards a universal research platform.
Nucleic Acids Res.
Fedor A. Kolpakov, Ilya R. Akberdin, Ilya Kiselev, Semyon Kolmykov, Yury V. Kondrakhin, Mikhail Kulyashov, Elena Kutumova, Sergey S. Pintus, Anna Ryabova, Ruslan N. Sharipov, Ivan S. Yevshin, Sergey Zhatchenko, Alexander E. Kel
2021 J jnl
GTRD: an integrated view of transcription regulation.
Nucleic Acids Res.
Semyon Kolmykov, Ivan S. Yevshin, Mikhail Kulyashov, Ruslan N. Sharipov, Yury V. Kondrakhin, Vsevolod J. Makeev, Ivan V. Kulakovskiy, Alexander E. Kel, Fedor A. Kolpakov
2019 J jnl
BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data.
Nucleic Acids Res.
Fedor A. Kolpakov, Ilya R. Akberdin, Timur A. Kashapov, llya Kiselev, Semyon Kolmykov, Yury V. Kondrakhin, Elena Kutumova, Nikita Mandrik, Sergey S. Pintus, Anna Ryabova, Ruslan N. Sharipov, Ivan S. Yevshin, Alexander E. Kel
2019 J jnl
GTRD: a database on gene transcription regulation - 2019 update.
Nucleic Acids Res.
Ivan S. Yevshin, Ruslan N. Sharipov, Semyon Kolmykov, Yury V. Kondrakhin, Fedor A. Kolpakov
2018 J jnl
Comparative analysis of protein-coding and long non-coding transcripts based on RNA sequence features.
J. Bioinform. Comput. Biol.
Oxana A. Volkova, Yury V. Kondrakhin, Timur A. Kashapov, Ruslan N. Sharipov
2016 J jnl
Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data.
J. Bioinform. Comput. Biol.
Oxana A. Volkova, Yury V. Kondrakhin, Ivan S. Yevshin, Tagir F. Valeev, Ruslan N. Sharipov
2008 J jnl
Identification of Differentially Expressed Genes by Meta-Analysis of Microarray Data on Breast Cancer.
Silico Biol.
Yury V. Kondrakhin, Ruslan N. Sharipov, Alexander E. Kel, Fedor A. Kolpakov
2007 J jnl
CYCLONET - an integrated database on cell cycle regulation and carcinogenesis.
Nucleic Acids Res.
Fedor A. Kolpakov, Vladimir Poroikov, Ruslan N. Sharipov, Yury V. Kondrakhin, Alexey V. Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel
2007 J jnl
Recognition of interferon-inducible sites, promoters, and enhancers.
BMC Bioinform.
Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Merkulova, Nikolay A. Kolchanov
1999 J jnl
Integrated databases and computer systems for studying eukaryotic gene expression.
Bioinform.
Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, Fedor A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Yury V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton
1998 A conf
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
ISMB
Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer
1997 — conf
Detecting direct correlations between positions in multiple alignments of amino acid sequences.
German Conference on Bioinformatics
Dmitry A. Afonnikov, Yury V. Kondrakhin, Igor I. Titov, Nikolay A. Kolchanov
1996 — conf
Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes.
German Conference on Bioinformatics
Yury V. Kondrakhin, Fedor A. Kolpakov, Alexander E. Kel, Nikolay A. Kolchanov, Luciano Milanesi
1995 A conf
Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences.
ISMB
Alexander E. Kel, Yury V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov
1995 J jnl
Eukaryotic promoter recognition by binding sites for transcription factors.
Comput. Appl. Biosci.
Yury V. Kondrakhin, Alexander E. Kel, Nikolay A. Kolchanov, Aida G. Romashchenko, Luciano Milanesi
1995 J jnl
PROANAL version 2: multifunctional program for analysis of multiple protein sequence alignments and for studying the structure--activity relationships in protein families.
Comput. Appl. Biosci.
A. M. Eroshkin, V. I. Fomin, P. A. Zhilkin, V. V. Ivanisenko, Yury V. Kondrakhin
1994 J jnl
Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites.
Comput. Appl. Biosci.
Yury V. Kondrakhin, V. V. Shamin, Nikolay A. Kolchanov