Yury Khudyakov

23 papers B 1Journal 8Unranked 12
YearRankTypeTitle / Venue / Authors
2026 — ed.
Computational Advances in Bio and Medical Sciences - 13th International Conference, ICCABS 2025, Atlanta, GA, USA, January 12-14, 2025, Revised Selected Papers
ICCABS
Mohammed Alser, Mukul S. Bansal, Yury Khudyakov, Serghei Mangul, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Shibu Yooseph, Alexander Zelikovsky
2025 — ed.
Computational Advances in Bio and Medical Sciences - 12th International Conference, ICCABS 2023, Norman, OK, USA, December 11-13, 2023, Revised Selected Papers
ICCABS
Mukul S. Bansal, Wei Chen, Yury Khudyakov, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Sharma V. Thankachan, Alexander Zelikovsky
2024 J jnl
Tool-Augmented LLMs as a Universal Interface for IDEs.
CoRR
Yaroslav Zharov, Yury Khudyakov, Evgeniia Fedotova, Evgeny Grigorenko, Egor Bogomolov
2024 — conf
Tool-augmented LLMs as a Universal Interface for IDEs.
IDE@ICSE
Yaroslav Zharov, Yury Khudyakov, Evgeniia Fedotova, Evgeny Grigorenko, Egor Bogomolov
2023 J jnl
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences.
J. Comput. Biol.
David S. Campo, Alexander Mosa, Yury Khudyakov
2022 J jnl
Primary case inference in viral outbreaks through analysis of intra-host variant population.
BMC Bioinform.
Walker Gussler, David S. Campo, Zoya Dimitrova, Pavel Skums, Yury Khudyakov
2022 B conf
SOPHIE: Viral Outbreak Investigation and Transmission History Reconstruction in a Joint Phylogenetic and Network Theory Framework.
RECOMB
Pavel Skums, Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer, Sumathi Ramachandran, Yury Khudyakov
2020 J jnl
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
BMC Bioinform.
David S. Campo, Yury Khudyakov
2019 — conf
Workshop on Computational Advances in Molecular Epidemiology.
BCB
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2018 — conf
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome.
BCB
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2018 J jnl
Automated quality control for a molecular surveillance system.
BMC Bioinform.
Seth Sims, Atkinson G. Longmire, David S. Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, Yury Khudyakov
2018 J jnl
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
BMC Bioinform.
Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums
2018 J jnl
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Bioinform.
Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov
2017 — conf
Agent-Based in Silico Evolution of HCV Quasispecies.
ISBRA
Alexander Artyomenko, Pelin B. Icer, Pavel Skums, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky
2017 — conf
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning.
ICCABS
Pelin Icer Baykal, Alexander Artyomenko, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky, Pavel Skums
2017 — conf
CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology.
BCB
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2017 — conf
Classification of HCV infections through sequence image normalization.
ICCABS
Sunitha Basodi, Pelin Burcak Icer, Pavel Skums, Yury Khudyakov, Alexander Zelikovsky, Yi Pan
2017 — conf
Efficient filtering algorithm for detection of genetic similarity between large genomic datasets.
ICCABS
Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums
2017 — conf
Modeling the Spread of HIV and HCV Infections Based on Identification and Characterization of High-Risk Communities Using Social Media.
ISBRA
Deeptanshu Jha, Pavel Skums, Alex Zelikovsky, Yury Khudyakov, Rahul Singh
2016 J jnl
Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction.
BMC Bioinform.
Xiaojun Xu, Hong Thai, Kathryn M. Kitrinos, Guo-liang Xia, Anuj Gaggar, Matthew Paulson, Lilia Ganova-Raeva, Yury Khudyakov, James Lara
2015 — conf
Algorithms for prediction of viral transmission using analysis of intra-host viral populations.
ICCABS
Pavel Skums, Olga Glebova, David S. Campo, Nana Li, Zoya Dimitrova, Seth Sims, Leonid Bunimovich, Alex Zelikovsky, Yury Khudyakov
2015 — conf
Efficient detection of viral transmission with threshold-based methods.
ICCABS
Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue
2015 — conf
Highlights: Predicting the cross-immunoreactivity of hepatitis C virus hyper-variable region 1 peptides using polynomial neural networks.
ICCABS
James Lara, Yury Khudyakov, Livia Rossi, Gilberto Vaughan