Yuriy Fofanov

19 papers C 2Journal 9Unranked 8
YearRankTypeTitle / Venue / Authors
2023 J jnl
Identification of multivariable Boolean patterns in microbiome and microbial gene composition data.
Biosyst.
George Golovko, Kamil Khanipov, Victor Reyes, Irina Pinchuk, Yuriy Fofanov
2019 J jnl
Broom: application for non-redundant storage of high throughput sequencing data.
Bioinform.
Levent Albayrak, Kamil Khanipov, George Golovko, Yuriy Fofanov
2018 J jnl
Detection of multi-dimensional co-exclusion patterns in microbial communities.
Bioinform.
Levent Albayrak, Kamil Khanipov, George Golovko, Yuriy Fofanov
2017 C conf
Exploration of Natural Alignment Scoring Rules and Clustering Thresholds for Bacterial Core/Pan Genome Analysis.
BIBE
Levent L. Albayrak, Kamil Khanipov, Mark Rojas, George Golovko, Maria Pimenova, Michael Kosoy, Yuriy Fofanov
2017 C conf
Novel Computational Approach for Identification of Highly Mutated Integrated HIV Genomes.
BIBE
Kamil Khanipov, Levent Albayrak, George Golovko, Maria Pimenova, Ioannis T. Pavlidis, Yuriy Fofanov, Khanipov K.
2015 — conf
CoCo: An application to store High-Throughput Sequencing data in compact text and binary file formats.
BIBM
Kamil Khanipov, Georgiy Golovko, Mark Rojas, Levent Albayrak, Otto Dobretsberger, Maria Pimenova, Nels Olson, Sergei Chumakov, Yuriy Fofanov
2012 J jnl
Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation.
BMC Bioinform.
Georgiy Golovko, Kamil Khanipov, Mark Rojas, Antonio Martínez-Alcántara, Jesse J. Howard, Efren Ballesteros, Sharu Gupta, William Widger, Yuriy Fofanov
2010 — conf
Co-Evolution of the Influenza Virus and Its Hosts.
BIOCOMP
Stephen Huff, Mark Rojas, Paul Havlak, Yuriy Fofanov
2009 J jnl
PIQA: pipeline for Illumina G1 genome analyzer data quality assessment.
Bioinform.
Antonio Martínez-Alcántara, Efren Ballesteros, Chen Feng, Mark Rojas, H. Koshinsky, Viacheslav Fofanov, Paul Havlak, Yuriy Fofanov
2007 — conf
Developing Assays for the Detection of Influenza in Human Samples.
BIOCOMP
Chen Feng, Catherine Putonti, Michael Quance, Stephen Huff, Andrey Belokrylov, S. Lennart Johnsson, Krishna Jayaraman, Michael Hogan, Yuriy Fofanov
2007 J jnl
Effect of the mutation rate and background size on the quality of pathogen identification.
Bioinform.
Chris Reed, Viacheslav Fofanov, Catherine Putonti, Sergei Chumakov, Tom Slezak, Yuriy Fofanov
2007 — conf
Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes.
BIOCOMP
Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov
2006 J jnl
A parallel computing algorithm for 16S rRNA probe design.
J. Parallel Distributed Comput.
Dianhui Zhu, Yuriy Fofanov, Richard C. Willson, George E. Fox
2006 — conf
Two Challenges in Genomics That Can Benefit from Petascale Platforms.
Euro-Par Workshops
Catherine Putonti, Meizhuo Zhang, S. Lennart Johnsson, Yuriy Fofanov
2005 — conf
ProkProbePicker (PPP): a Fast Program to Extract 16S rRNA-Targeted Probes for Prokaryotes.
METMBS
Dianhui Zhu, Yuriy Fofanov, Richard C. Willson, George E. Fox
2004 — conf
Analysis of Promoter Regions for Essential Genes of Bacillus subtilis for Using PIDA.
METMBS
Catherine Putonti, Yuriy Fofanov
2004 J jnl
How independent are the appearances of n-mers in different genomes?
Bioinform.
Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergei Chumakov, B. Montgomery Pettitt
2004 — conf
Using Statistical Properties of Short Subsequences in Microbial Identification.
METMBS
Sergei Chumakov, Catherine Putonti, B. Montgomery Pettitt, George E. Fox, Richard C. Willson, Yuriy Fofanov
2002 J jnl
Reconstruction of the genetic regulatory dynamics of the rat spinal cord development: Local Invariants approach.
J. Biomed. Informatics
Yuriy Fofanov, B. Montgomery Pettitt