Yuri Khudyakov

27 papers Journal 11Unranked 16
YearRankTypeTitle / Venue / Authors
2015 J jnl
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinform.
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov
2014 J jnl
Computational models of liver fibrosis progression for hepatitis C virus chronic infection.
BMC Bioinform.
James Lara, F. Xavier López-Labrador, Fernando González-Candelas, Marina Berenguer, Yuri Khudyakov
2014 — conf
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data.
ICCABS
Pavel Skums, Alexander Artyomenko, Olga Glebova, Alex Zelikovsky, David S. Campo, Zoya Dimitrova, Yuri Khudyakov
2014 — conf
New computational methods for assessing the genetic relatedness of close viral variants.
ICCABS
David S. Campo, Zoya Dimitrova, Guo-liang Xia, Pavel Skums, Lilia Ganova-Raeva, Yuri Khudyakov
2013 — conf
Alignment of DNA Mass-Spectral Profiles Using Network Flows.
ISBRA
Pavel Skums, Olga Glebova, Alex Zelikovsky, Zoya Dimitrova, David Stiven Campo Rendon, Lilia Ganova-Raeva, Yuri Khudyakov
2013 — conf
Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies.
ICCABS
Pavel Skums, David S. Campo, Zoya Dimitrova, Leonid Bunimovich, Yuri Khudyakov
2013 — conf
Hepatitis C virus genetic association to rate of liver fibrosis progression.
ICCABS
James Lara, Yuri Khudyakov, F. Xavier López-Labrador, Fernando González-Candelas, Marina Berenguer
2013 — conf
Mutational robustness of hepatitis C virus intra-host variants.
ICCABS
David S. Campo, Zoya Dimitrova, Pavel Skums, Yuri Khudyakov
2013 — conf
Optimizing pooling strategies for the massive next-generation sequencing of viral samples.
ICCABS
Pavel Skums, Olga Glebova, Alex Zelikovsky, Ion I. Mandoiu, Yuri Khudyakov
2013 J jnl
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
BMC Bioinform.
Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion I. Mandoiu, Yuri Khudyakov, Alex Zelikovsky
2012 J jnl
Association of antigenic properties to structure of the hepatitis C virus NS3 protein.
Silico Biol.
James Lara, Yuri Khudyakov
2012 J jnl
Coordinated evolution among hepatitis C virus genomic sites is coupled to host factors and resistance to interferon.
Silico Biol.
James Lara, John E. Tavis, Maureen J. Donlin, William M. Lee, He-Jun Yuan, Brian L. Pearlman, Gilberto Vaughan, Joseph C. Forbi, Guo-liang Xia, Yuri Khudyakov
2012 J jnl
Coordinated evolution of the Hepatitis B Virus Polymerase.
Silico Biol.
David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov
2012 J jnl
Differences in variability of hypervariable region 1 of hepatitis C virus (HCV) between acute and chronic stages of HCV infection.
Silico Biol.
Irina V. Astrakhantseva, David S. Campo, Aufra Araujo, Chong-Gee Teo, Yuri Khudyakov, Saleem Kamili
2012 J jnl
Efficient error correction for next-generation sequencing of viral amplicons.
BMC Bioinform.
Pavel Skums, Zoya Dimitrova, David S. Campo, Gilberto Vaughan, Livia Rossi, Joseph C. Forbi, Jonny Yokosawa, Alex Zelikovsky, Yuri Khudyakov
2012 J jnl
Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry.
Silico Biol.
Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov
2012 J jnl
Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response.
Silico Biol.
Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov
2011 — conf
Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry.
BIBM Workshops
Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov
2011 — conf
Host-specific HCV evolution and response to the combined interferon and ribavirin therapy.
BIBM Workshops
James Lara, John E. Tavis, Maureen J. Donlin, William M. Lee, He-Jun Yuan, Brian L. Pearlman, Gilberto Vaughan, Joseph C. Forbi, Guo-liang Xia, Yuri Khudyakov
2011 — conf
Modeling antigenic property of the hepatitis C virus NS3 protein.
BIBM Workshops
James Lara, Yuri Khudyakov
2011 — conf
Modelling differential interferon resistance of HCV quasispecies.
BIBM Workshops
Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov
2011 — conf
Network of coordinated substitutions in the Hepatitis B virus polymerase.
BIBM Workshops
David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov
2011 — conf
Variation in physicochemical properties of the hypervariable region 1 during acute and chronic stages of hepatitis C virus infection.
BIBM Workshops
Irina V. Astrakhantseva, David S. Campo, Aufra Araujo, Chong-Gee Teo, Yuri Khudyakov, Saleem Kamili
2008 J jnl
Artificial neural network for prediction of antigenic activity for a major conformational epitope in the hepatitis C virus NS3 protein.
Bioinform.
James Lara, Robert M. Wohlhueter, Zoya Dimitrova, Yuri Khudyakov
2008 — conf
HCV Quasispecies Assembly Using Network Flows.
ISBRA
Kelly Westbrooks, Irina Astrovskaya, David S. Campo, Yuri Khudyakov, Piotr Berman, Alexander Zelikovsky
2008 — conf
Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling.
ISBRA
James Lara, Zoya Dimitrova, Yuri Khudyakov
2008 — conf
Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure.
ISBRA
David S. Campo, Zoya Dimitrova, Yuri Khudyakov