Yuri I. Wolf

24 papers B 1Journal 20Unranked 3
YearRankTypeTitle / Venue / Authors
2024 — conf
On the Distribution of Synteny Blocks Under a Neutral Model of Genome Dynamics.
RECOMB-CG
Sagi Snir, Yuri I. Wolf, Shelly Brezner, Eugene V. Koonin, Mike A. Steel
2021 J jnl
COG database update: focus on microbial diversity, model organisms, and widespread pathogens.
Nucleic Acids Res.
Michael Y. Galperin, Yuri I. Wolf, Kira S. Makarova, Roberto Vera Alvarez, David Landsman, Eugene V. Koonin
2021 J jnl
Thermodynamics of Evolution and the Origin of Life.
CoRR
Vitaly Vanchurin, Yuri I. Wolf, Eugene V. Koonin, Mikhail I. Katsnelson
2021 J jnl
Towards a Theory of Evolution as Multilevel Learning.
CoRR
Vitaly Vanchurin, Yuri I. Wolf, Mikhail I. Katsnelson, Eugene V. Koonin
2019 J jnl
Microbial genome analysis: the COG approach.
Briefings Bioinform.
Michael Y. Galperin, David M. Kristensen, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin
2017 J jnl
ATGC database and ATGC-COGs: an updated resource for micro- and macro-evolutionary studies of prokaryotic genomes and protein family annotation.
Nucleic Acids Res.
David M. Kristensen, Yuri I. Wolf, Eugene V. Koonin
2015 J jnl
Expanded microbial genome coverage and improved protein family annotation in the COG database.
Nucleic Acids Res.
Michael Y. Galperin, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin
2013 J jnl
The Vast, Conserved Mammalian lincRNome.
PLoS Comput. Biol.
David Managadze, Alexander E. Lobkovsky, Yuri I. Wolf, Svetlana A. Shabalina, Igor B. Rogozin, Eugene V. Koonin
2012 J jnl
Universal Pacemaker of Genome Evolution.
PLoS Comput. Biol.
Sagi Snir, Yuri I. Wolf, Eugene V. Koonin
2011 J jnl
Comparison of Phylogenetic Trees and Search for a Central Trend in the "Forest of Life".
J. Comput. Biol.
Eugene V. Koonin, Pere Puigbò, Yuri I. Wolf
2011 J jnl
Computational methods for Gene Orthology inference.
Briefings Bioinform.
David M. Kristensen, Yuri I. Wolf, Arcady R. Mushegian, Eugene V. Koonin
2011 J jnl
Predictability of Evolutionary Trajectories in Fitness Landscapes.
PLoS Comput. Biol.
Alexander E. Lobkovsky, Yuri I. Wolf, Eugene V. Koonin
2010 J jnl
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches.
Bioinform.
David M. Kristensen, Lavanya Kannan, Michael K. Coleman, Yuri I. Wolf, Alexander Sorokin, Eugene V. Koonin, Arcady R. Mushegian
2010 J jnl
EREM: Parameter Estimation and Ancestral Reconstruction by Expectation-Maximization Algorithm for a Probabilistic Model of Genomic Binary Characters Evolution.
Adv. Bioinformatics
Liran Carmel, Yuri I. Wolf, Igor B. Rogozin, Eugene V. Koonin
2009 J jnl
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes.
Nucleic Acids Res.
Pavel S. Novichkov, Igor Ratnere, Yuri I. Wolf, Eugene V. Koonin, Inna Dubchak
2005 — conf
An Expectation-Maximization Algorithm for Analysis of Evolution of Exon-Intron Structure of Eukaryotic Genes.
Comparative Genomics
Liran Carmel, Igor B. Rogozin, Yuri I. Wolf, Eugene V. Koonin
2004 J jnl
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.
Briefings Bioinform.
Igor B. Rogozin, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin
2003 J jnl
Simple stochastic birth andz death models of genome evolution: was there enough time for us to evolve?
Bioinform.
Georgy P. Karev, Yuri I. Wolf, Eugene V. Koonin
2003 J jnl
The COG database: an updated version includes eukaryotes.
BMC Bioinform.
Roman L. Tatusov, Natalie D. Fedorova, John D. Jackson, Aviva R. Jacobs, Boris Kiryutin, Eugene V. Koonin, Dmitri M. Krylov, Raja Mazumder, Sergei L. Mekhedov, Anastasia N. Nikolskaya, B. Sridhar Rao, Sergei Smirnov, Alexander V. Sverdlov, Sona Vasudevan, Yuri I. Wolf, Jodie J. Yin, Darren A. Natale
2000 J jnl
Winnowing Sequences from a Database Search.
J. Comput. Biol.
Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller
1999 J jnl
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
Bioinform.
Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul
1999 B conf
Winnowing sequences from a database search.
RECOMB
Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller
1996 — conf
Sequence Similarity Significance: Computer Simulations and Analytically obtained Bounds.
German Conference on Bioinformatics
Igor A. Seledtsov, Yuri I. Wolf, Dmitry Korshunov, Kira S. Makarova
1992 J jnl
DIROM: an experimental design interactive system for directed mutagenesis and nucleic acids engineering.
Comput. Appl. Biosci.
Kira S. Makarova, A. V. Mazin, Yuri I. Wolf, V. V. Soloviev