Yunan Luo - RankMe

30 papers A* 4B 8Misc 1Journal 16

Year	Rank	Type	Title / Venue / Authors
2025	A*	`conf`	Group Ligands Docking to Protein Pockets. ICLR Jiaqi Guan, Jiahan Li, Xiangxin Zhou, Xingang Peng, Sheng Wang, Yunan Luo, Jian Peng, Jianzhu Ma
2025	J	`jnl`	Group Ligands Docking to Protein Pockets. CoRR Jiaqi Guan, Jiahan Li, Xiangxin Zhou, Xingang Peng, Sheng Wang, Yunan Luo, Jian Peng, Jianzhu Ma
2025	B	`conf`	Learning Maximally Spanning Representations Improves Protein Function Annotation. RECOMB Jiaqi Luo, Yunan Luo
2025	—	`ed.`	Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2025, Element Philadelphia Downtown, Philadelphia, PA, USA, October 12-15, 2025 BCB Xinghua Mindy Shi, Xiaoning Qian, Minghan Chen, Jacob M. Luber, Gail L. Rosen, Yunan Luo
2025	B	`conf`	Rewiring Protein Sequence and Structure Generative Models to Enhance Protein Stability Prediction. RECOMB Ziang Li, Yunan Luo
2024	B	`conf`	Contrastive Fitness Learning: Reprogramming Protein Language Models for Low-N Learning of Protein Fitness Landscape. RECOMB Junming Zhao, Chao Zhang, Yunan Luo
2024	A*	`conf`	FAFE: Immune Complex Modeling with Geodesic Distance Loss on Noisy Group Frames. ICML Ruidong Wu, Ruihan Guo, Rui Wang, Shitong Luo, Yue Xu, Jiahan Li, Jianzhu Ma, Qiang Liu, Yunan Luo, Jian Peng
2024	J	`jnl`	FAFE: Immune Complex Modeling with Geodesic Distance Loss on Noisy Group Frames. CoRR Ruidong Wu, Ruihan Guo, Rui Wang, Shitong Luo, Yue Xu, Jiahan Li, Jianzhu Ma, Qiang Liu, Yunan Luo, Jian Peng
2024	J	`jnl`	Leveraging conformal prediction to annotate enzyme function space with limited false positives. PLoS Comput. Biol. Kerr Ding, Jiaqi Luo, Yunan Luo
2023	J	`jnl`	Calibrated geometric deep learning improves kinase-drug binding predictions. Nat. Mac. Intell. Yunan Luo, Yang Liu, Jian Peng
2023	A*	`conf`	Interpretable Geometric Deep Learning via Learnable Randomness Injection. ICLR Siqi Miao, Yunan Luo, Mia Liu, Pan Li
2023	A*	`conf`	LinkerNet: Fragment Poses and Linker Co-Design with 3D Equivariant Diffusion. NeurIPS Jiaqi Guan, Xingang Peng, Peiqi Jiang, Yunan Luo, Jian Peng, Jianzhu Ma
2023	J	`jnl`	Sensing the shape of functional proteins with topology. Nat. Comput. Sci. Yunan Luo
2023	J	`jnl`	Supervised biological network alignment with graph neural networks. Bioinform. Kerr Ding, Sheng Wang, Yunan Luo
2022	J	`jnl`	Interpretable Geometric Deep Learning via Learnable Randomness Injection. CoRR Siqi Miao, Yunan Luo, Mia Liu, Pan Li
2022	J	`jnl`	scPretrain: multi-task self-supervised learning for cell-type classification. Bioinform. Ruiyi Zhang, Yunan Luo, Jianzhu Ma, Ming Zhang, Sheng Wang
2021	J	`jnl`	Deep geometric representations for modeling effects of mutations on protein-protein binding affinity. PLoS Comput. Biol. Xianggen Liu, Yunan Luo, Pengyong Li, Sen Song, Jian Peng
2020	B	`conf`	Evolutionary Context-Integrated Deep Sequence Modeling for Protein Engineering. RECOMB Yunan Luo, Lam Vo, Hantian Ding, Yufeng Su, Yang Liu, Wesley Wei Qian, Huimin Zhao, Jian Peng
2020	J	`jnl`	Pre-training of Graph Neural Network for Modeling Effects of Mutations on Protein-Protein Binding Affinity. CoRR Xianggen Liu, Yunan Luo, Sen Song, Jian Peng
2020	J	`jnl`	STAIR 2.0: A Generic and Automatic Algorithm to Fuse Modis, Landsat, and Sentinel-2 to Generate 10 m, Daily, and Cloud-/Gap-Free Surface Reflectance Product. Remote. Sens. Yunan Luo, Kaiyu Guan, Jian Peng, Sibo Wang, Yizhi Huang
2020	J	`jnl`	When causal inference meets deep learning. Nat. Mach. Intell. Yunan Luo, Jian Peng, Jianzhu Ma
2019	J	`jnl`	DeepMask: an algorithm for cloud and cloud shadow detection in optical satellite remote sensing images using deep residual network. CoRR Ke Xu, Kaiyu Guan, Jian Peng, Yunan Luo, Sibo Wang
2019	J	`jnl`	Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction. PLoS Comput. Biol. Yufeng Su, Yunan Luo, Xiaoming Zhao, Yang Liu, Jian Peng
2019	J	`jnl`	Metagenomic binning through low-density hashing. Bioinform. Yunan Luo, Yun William Yu, Jianyang Zeng, Bonnie Berger, Jian Peng
2019	B	`conf`	Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning. RECOMB Yunan Luo, Jianzhu Ma, Xiaoming Zhao, Yufeng Su, Yang Liu, Trey Ideker, Jian Peng
2019	J	`jnl`	Sequence Modeling of Temporal Credit Assignment for Episodic Reinforcement Learning. CoRR Yang Liu, Yunan Luo, Yuanyi Zhong, Xi Chen, Qiang Liu, Jian Peng
2018	B	`conf`	Deciphering Signaling Specificity with Deep Neural Networks. RECOMB Yunan Luo, Jianzhu Ma, Yang Liu, Qing Ye, Trey Ideker, Jian Peng
2018	Misc	`conf`	Large-scale integration of heterogeneous pharmacogenomic data for identifying drug mechanism of action. PSB Yunan Luo, Sheng Wang, Jinfeng Xiao, Jian Peng
2017	B	`conf`	A Network Integration Approach for Drug-Target Interaction Prediction and Computational Drug Repositioning from Heterogeneous Information. RECOMB Yunan Luo, Xinbin Zhao, Jingtian Zhou, Jinling Yang, Yanqing Zhang, Wenhua Kuang, Jian Peng, Ligong Chen, Jianyang Zeng
2016	B	`conf`	Low-Density Locality-Sensitive Hashing Boosts Metagenomic Binning. RECOMB Yunan Luo, Jianyang Zeng, Bonnie Berger, Jian Peng