Yun Zuo

28 papers A 1Journal 24Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
FKSUDDAPre: A drug-disease association prediction framework based on F-TEST feature selection and AMDKSU resampling with interpretability analysis.
PLoS Comput. Biol.
Yun Zuo, Chenyi Zhang, Ge Hua, Qiao Ning, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2026 J jnl
XRepDDA: An Interpretable Drug-Disease Association Prediction Framework Leveraging Pretrained Chemical Language Models.
J. Chem. Inf. Model.
Chenyi Zhang, Yun Zuo, Qiao Ning, Sisi Yuan, Zhaohong Deng, Hongwei Yin, Anjing Zhao
2025 J jnl
CATransUnetLBP: Accurate Prediction of Protein-Ligand Binding Pockets Using a Hybrid Network.
IEEE Trans. Comput. Biol. Bioinform.
Cheng Cai, Zhaohong Deng, Andong Li, Yun Zuo, Haoran Chen, Zhisheng Wei, Lei Wang, Xiaoyong Pan, Hong-Bin Shen, Dong-Jun Yu
2025 A conf
Catching mRNA's Hiddens Marks: A Dual-Path Network by Contrastive Learning for N4-acetylcytidine Prediction.
ECAI
Wenying He, Yu Han, Haolu Zhou, Yun Zuo, Yude Bai, Fei Guo
2025 — conf
DCFICSH: A Dual-Channel Fusion Model Combining Multi-Modal Data for Identifying Cell-Specific Silencers and Their Strength in the Human Genome.
ICIC (19)
Jingdong Yuan, Qinqin Zhu, Haolu Zhou, Yu Han, Yun Zuo, Yude Bai, Wenying He
2025 J jnl
DMMAFS: Protein Function Prediction Based on Multi-Modal Multi-Attention Fusion Features.
IEEE Trans. Comput. Biol. Bioinform.
Liangwen He, Zhaohong Deng, Fuping Hu, Zhongyu Wang, Yun Zuo, Lin Zhu, Haoran Chen, Xiaoyong Pan, Zhisheng Wei, Lei Wang, Hong-Bin Shen, Dong-Jun Yu, Jing Wu
2025 J jnl
Diff-SE: A Diffusion-Augmented Contrastive Learning Framework for Super-Enhancer Prediction.
J. Chem. Inf. Model.
Haolu Zhou, Yu Han, Yude Bai, Yun Zuo, Wenying He, Fei Guo
2025 J jnl
Explainable RNA-Small Molecule Binding Affinity Prediction Based on Multiview Enhancement Learning.
J. Chem. Inf. Model.
Zeyu Wu, Zhaohong Deng, Qunzhuo Wu, Yun Zuo, Xiaoyong Pan, Hongbin Shen, Xingze Fang, Yuxi Ge, Shudong Hu
2025 J jnl
GlySitePred: Identification of Glycation Modification Sites Based on Deep Feature Fusion and NCR-CC Sampling Technology.
J. Chem. Inf. Model.
Jiayue Liu, Yun Zuo, Youxu Tan, Wenying He, Sisi Yuan, Zhaohong Deng
2025 J jnl
HMBVIP: A Novel Hierarchical Multi-Bio-View Intelligent Prediction Networks for Drug-Target Interaction Prediction.
J. Chem. Inf. Model.
Hailong Yang, Qiao Ning, Ze Song, Yue Chen, Guanjin Wang, Zhaohong Deng, Yun Zuo, Yuxi Ge, Shudong Hu
2025 J jnl
HyperACP: A cutting-edge hybrid framework for anticancer peptide classification via scalable feature extraction and adaptive neighbor-based synthesis.
PLoS Comput. Biol.
Bangyi Zhang, Yun Zuo, Jun Wan, Jiayue Liu, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2025 J jnl
LM-TLIPs: Integrating Large Model and Transfer Learning Technology for Precise Identification of Phosphorylation Sites in SARS-CoV-2.
IEEE J. Biomed. Health Informatics
Yun Zuo, Minquan Wan, Xinyue Shao, Dandan Qiao, Bulanni Xiong, Zhaohong Deng
2025 J jnl
MBSCLoc: Multi-Label Subcellular Localization Predict Based on Cluster Balanced Subspace Partitioning Method and Multi-Class Contrastive Representation Learning.
IEEE J. Biomed. Health Informatics
Bangyi Zhang, Yun Zuo, Zhiqiang Dai, Sifan Zhu, Xuan Liu, Zhaohong Deng
2025 J jnl
MlyPredCSED: based on extreme point deviation compensated clustering combined with cross-scale convolutional neural networks to predict multiple lysine sites in human.
Briefings Bioinform.
Yun Zuo, Xingze Fang, Jiankang Chen, Jiayi Ji, Yuwen Li, Zeyu Wu, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng, Hongwei Yin, Anjing Zhao
2025 J jnl
PreAIS: Prediction of A-to-I editing sites based on DNN-CNN deep learning models.
Comput. Biol. Chem.
Xingze Fang, Yun Zuo, Youxu Tan, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2024 J jnl
Glypred: Lysine Glycation Site Prediction via CCU-LightGBM-BiLSTM Framework with Multi-Head Attention Mechanism.
J. Chem. Inf. Model.
Yun Zuo, Bangyi Zhang, Yinkang Dong, Wenying He, Yue Bi, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2024 J jnl
ILYCROsite: Identification of lysine crotonylation sites based on FCM-GRNN undersampling technique.
Comput. Biol. Chem.
Yun Zuo, Minquan Wan, Yang Shen, Xinheng Wang, Wenying He, Yue Bi, Xiangrong Liu, Zhaohong Deng
2024 J jnl
MINDG: a drug-target interaction prediction method based on an integrated learning algorithm.
Bioinform.
Hailong Yang, Yue Chen, Yun Zuo, Zhaohong Deng, Xiaoyong Pan, Hong-Bin Shen, Kup-Sze Choi, Dong-Jun Yu
2024 J jnl
MSlocPRED: deep transfer learning-based identification of multi-label mRNA subcellular localization.
Briefings Bioinform.
Yun Zuo, Bangyi Zhang, Wenying He, Yue Bi, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2024 J jnl
MuSE: A deep learning model based on multi-feature fusion for super-enhancer prediction.
Comput. Biol. Chem.
Wenying He, Haolu Zhou, Yun Zuo, Yude Bai, Fei Guo
2024 J jnl
NBCR-ac4C: A Deep Learning Framework Based on Multivariate BERT for Human mRNA N4-Acetylcytidine Sites Prediction.
J. Chem. Inf. Model.
Wenying He, Yu Han, Yun Zuo, Yude Bai, Fei Guo
2024 J jnl
PreMLS: The undersampling technique based on ClusterCentroids to predict multiple lysine sites.
PLoS Comput. Biol.
Yun Zuo, Xingze Fang, Jiayong Wan, Wenying He, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2023 J jnl
MLNGCF: circRNA-disease associations prediction with multilayer attention neural graph-based collaborative filtering.
Bioinform.
Qunzhuo Wu, Zhaohong Deng, Wei Zhang, Xiaoyong Pan, Kup-Sze Choi, Yun Zuo, Hong-Bin Shen, Dong-Jun Yu
2022 J jnl
MLysPRED: graph-based multi-view clustering and multi-dimensional normal distribution resampling techniques to predict multiple lysine sites.
Briefings Bioinform.
Yun Zuo, Yue Hong, Xiangxiang Zeng, Qiang Zhang, Xiangrong Liu
2021 J jnl
CarSite-II: an integrated classification algorithm for identifying carbonylated sites based on K-means similarity-based undersampling and synthetic minority oversampling techniques.
BMC Bioinform.
Yun Zuo, Jianyuan Lin, Xiangxiang Zeng, Quan Zou, Xiangrong Liu
2021 — conf
Pm
BIBM
Yun Zuo, Xiangrong Liu, Xiangxiang Zeng
2019 — conf
A Deep Neural Network for Antimicrobial Peptide Recognition.
BIBM
Jianyuan Lin, Xiangxiang Zeng, Yun Zuo, Ying Ju, Xiangrong Liu
2018 J jnl
O-GlcNAcPRED-II: an integrated classification algorithm for identifying O-GlcNAcylation sites based on fuzzy undersampling and a K-means PCA oversampling technique.
Bioinform.
Cangzhi Jia, Yun Zuo, Quan Zou