Yuming Guo

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2025 J jnl
Integrating Graph Convolutional Networks for Missing Gene Expression Imputation.
IEEE Trans. Comput. Biol. Bioinform.
Ying Zhang, Hong-Jin Yu, Zihao Yan, Tong Pan, Yiwen Zhang, Yan Liu, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu
2025 J jnl
Multimodal geometric learning for antimicrobial peptide identification by leveraging alphafold2-predicted structures and surface features.
Briefings Bioinform.
Zehua Sun, Jing Xu, Yumeng Zhang, Yiwen Zhang, Zhikang Wang, Xiaoyu Wang, Shanshan Li, Yuming Guo, Hsin Hui Shen, Jiangning Song
2025 J jnl
Structure-Directed Pan-Specific T-Cell Receptor-Peptide-Major Histocompatibility Complex Interaction Prediction.
J. Chem. Inf. Model.
Letao Gao, Yumeng Zhang, Fang Ge, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu
2025 J jnl
Supervised contrastive learning enhances MHC-II peptide binding affinity prediction.
Expert Syst. Appl.
Long-Chen Shen, Yan Liu, Zi Liu, Yumeng Zhang, Zhikang Wang, Yuming Guo, Jamie Rossjohn, Jiangning Song, Dong-Jun Yu
2024 J jnl
Deep learning approaches for non-coding genetic variant effect prediction: current progress and future prospects.
Briefings Bioinform.
Xiaoyu Wang, Fuyi Li, Yiwen Zhang, Seiya Imoto, Hsin-Hui Shen, Shanshan Li, Yuming Guo, Jian Yang, Jiangning Song
2024 J jnl
GraphormerDTI: A graph transformer-based approach for drug-target interaction prediction.
Comput. Biol. Medicine
Mengmeng Gao, Daokun Zhang, Yi Chen, Yiwen Zhang, Zhikang Wang, Xiaoyu Wang, Shanshan Li, Yuming Guo, Geoffrey I. Webb, Anh T. N. Nguyen, Lauren T. May, Jiangning Song
2024 J jnl
MLSNet: a deep learning model for predicting transcription factor binding sites.
Briefings Bioinform.
Yuchuan Zhang, Zhikang Wang, Fang Ge, Xiaoyu Wang, Yiwen Zhang, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu
2024 J jnl
PmxPred: A data-driven approach for the identification of active polymyxin analogues against gram-negative bacteria.
Comput. Biol. Medicine
Xiaoyu Wang, Nitin Patil, Fuyi Li, Zhikang Wang, Haolan Zhan, Daniel Schmidt, Philip Thompson, Yuming Guo, Cornelia B. Landersdorfer, Hsin-Hui Shen, Anton Y. Peleg, Jian Li, Jiangning Song
2023 J jnl
A Large-Scale Dataset of Conservation and Deep Tillage in Mollisols, Northeast Plain, China.
Data
Fahui Jiang, Shangshu Huang, Yan Wu, Mahbub Ul Islam, Fangjin Dong, Zhen Cao, Guohui Chen, Yuming Guo
2023 J jnl
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues.
Bioinform.
Ying Zhang, Zhikang Wang, Yiwen Zhang, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu
2023 J jnl
MULGA, a unified multi-view graph autoencoder-based approach for identifying drug-protein interaction and drug repositioning.
Bioinform.
Jiani Ma, Chen Li, Yiwen Zhang, Zhikang Wang, Shanshan Li, Yuming Guo, Lin Zhang, Hui Liu, Xin Gao, Jiangning Song
2023 J jnl
SMG: self-supervised masked graph learning for cancer gene identification.
Briefings Bioinform.
Yan Cui, Zhikang Wang, Xiaoyu Wang, Yiwen Zhang, Ying Zhang, Tong Pan, Zhe Zhang, Shanshan Li, Yuming Guo, Tatsuya Akutsu, Jiangning Song
2023 J jnl
Selective Feature Bagging of one-class classifiers for novelty detection in high-dimensional data.
Eng. Appl. Artif. Intell.
Biao Wang, Wenjing Wang, Guanglei Meng, Tiankuo Meng, Bin Song, Yingnan Wang, Yuming Guo, Zhihua Qiao, Zhizhong Mao
2023 J jnl
Surformer: An interpretable pattern-perceptive survival transformer for cancer survival prediction from histopathology whole slide images.
Comput. Methods Programs Biomed.
Zhikang Wang, Qian Gao, Xiaoping Yi, Xinyu Zhang, Yiwen Zhang, Daokun Zhang, Pietro Liò, Chris Bain, Richard Bassed, Shanshan Li, Yuming Guo, Seiya Imoto, Jianhua Yao, Roger J. Daly, Jiangning Song
2022 J jnl
Boosting the prediction of molten steel temperature in ladle furnace with a dynamic outlier ensemble.
Eng. Appl. Artif. Intell.
Biao Wang, Wenjing Wang, Guanglei Meng, Zhihua Qiao, Yuming Guo, Na Wang, Wei Wang, Zhizhong Mao
2022 J jnl
Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations.
Briefings Bioinform.
Yue Bi, Fuyi Li, Xudong Guo, Zhikang Wang, Tong Pan, Yuming Guo, Geoffrey I. Webb, Jianhua Yao, Cangzhi Jia, Jiangning Song
2022 J jnl
RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins.
Briefings Bioinform.
Xinxin Peng, Xiaoyu Wang, Yuming Guo, Zongyuan Ge, Fuyi Li, Xin Gao, Jiangning Song
2020 J jnl
Comparison of Different Missing-Imputation Methods for MAIAC (Multiangle Implementation of Atmospheric Correction) AOD in Estimating Daily PM2.5 Levels.
Remote. Sens.
Zhao-Yue Chen, Jie-Qi Jin, Rong Zhang, Tian-Hao Zhang, Jin-Jian Chen, Jun Yang, Chun-Quan Ou, Yuming Guo