Yulia A. Medvedeva

14 papers Journal 11Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprinting.
Briefings Bioinform.
Pavel Akhtyamov, Layal Shaheen, Mikhail Raevskiy, Alexey Stupnikov, Yulia A. Medvedeva
2023 J jnl
EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes.
Nucleic Acids Res.
Daria Marakulina, Ilya E. Vorontsov, Ivan V. Kulakovskiy, Andreas Lennartsson, Finn Drabløs, Yulia A. Medvedeva
2021 — conf
Increasing the Competitiveness of Info-Telecommunications Enterprises Through Building a Mobile Eco-system.
NEW2AN/ruSMART
Irina Krasyuk, Valery Leventsov, Olga Kartavenko, Maria Kolgan, Yulia A. Medvedeva
2021 — conf
Transforming the Strategic Benchmarks of Russian Telecommunications Companies in the Sustainable Development Paradigm.
NEW2AN/ruSMART
Irina Krasyuk, Oksana Evseeva, Maria Kolgan, Yulia A. Medvedeva
2020 — conf
Building a Platform-Type Business Model to Form an Omnichannel Integration in the Telecommunications Industry.
NEW2AN/ruSMART (2)
Irina Krasyuk, Valery Leventsov, Maria Kolgan, Yulia A. Medvedeva
2019 J jnl
Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools.
Briefings Bioinform.
Ivan V. Antonov, Evgeny Mazurov, Mark Borodovsky, Yulia A. Medvedeva
2018 J jnl
ASSA: Fast identification of statistically significant interactions between long RNAs.
J. Bioinform. Comput. Biol.
Ivan Antonov, Andrey Marakhonov, Maria Zamkova, Yulia A. Medvedeva
2018 J jnl
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Nucleic Acids Res.
Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan S. Yevshin, Ruslan N. Sharipov, Alla D. Fedorova, Eugene I. Rumynskiy, Yulia A. Medvedeva, Arturo Magana-Mora, Vladimir B. Bajic, Dmitri A. Papatsenko, Fedor A. Kolpakov, Vsevolod J. Makeev
2017 J jnl
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.
Nucleic Acids Res.
Marina Lizio, Jayson Harshbarger, Imad Abugessaisa, Shuei Noguchi, Atsushi Kondo, Jessica Severin, Chris Mungall, David J. Arenillas, Anthony Mathelier, Yulia A. Medvedeva, Andreas Lennartsson, Finn Drabløs, Jordan A. Ramilowski, Owen J. L. Rackham, Julian Gough, Robin Andersson, Albin Sandelin, Hans Ienasescu, Hiromasa Ono, Hidemasa Bono, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, Takeya Kasukawa, Hideya Kawaji
2016 J jnl
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.
Nucleic Acids Res.
Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan S. Yevshin, Anastasiia V. Soboleva, Artem S. Kasianov, Haitham Ashoor, Wail Ba-alawi, Vladimir B. Bajic, Yulia A. Medvedeva, Fedor A. Kolpakov, Vsevolod J. Makeev
2015 J jnl
EpiFactors: a comprehensive database of human epigenetic factors and complexes.
Database J. Biol. Databases Curation
Yulia A. Medvedeva, Andreas Lennartsson, Rezvan Ehsani, Ivan V. Kulakovskiy, Ilya E. Vorontsov, Pouda Panahandeh, Grigory Khimulya, Takeya Kasukawa, Finn Drabløs
2013 J jnl
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.
Nucleic Acids Res.
Ivan V. Kulakovskiy, Yulia A. Medvedeva, Ulf Schaefer, Artem S. Kasianov, Ilya E. Vorontsov, Vladimir B. Bajic, Vsevolod J. Makeev
2012 J jnl
Exploring Massive, Genome Scale Datasets with the GenometriCorr Package.
PLoS Comput. Biol.
Alexander V. Favorov, Loris Mularoni, Leslie M. Cope, Yulia A. Medvedeva, Andrey A. Mironov, Vsevolod J. Makeev, Sarah J. Wheelan
2011 J jnl
A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites.
Bioinform.
Ivan V. Kulakovskiy, A. A. Belostotsky, Artem S. Kasianov, Natalia G. Esipova, Yulia A. Medvedeva, I. A. Eliseeva, Vsevolod J. Makeev