Yuko Makita

16 papers Misc 1Journal 11Unranked 4
YearRankTypeTitle / Venue / Authors
2013 — conf
PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web.
SWAT4LS
Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda
2013 J jnl
PosMed: ranking genes and bioresources based on Semantic Web Association Study.
Nucleic Acids Res.
Yuko Makita, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda
2013 J jnl
PromoterCAD: data-driven design of plant regulatory DNA.
Nucleic Acids Res.
Robert Sidney Cox III, Koro Nishikata, Sayoko Shimoyama, Yuko Yoshida, Minami Matsui, Yuko Makita, Tetsuro Toyoda
2012 — conf
Development of Linked Open Data for Bioresources.
JIST
Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida, Yoshiki Mochizuki, Norio Kobayashi, Atsushi Yoshiki, Yukio Nakamura, Tetsuro Toyoda, Yuichi Obata
2011 J jnl
The RIKEN integrated database of mammals.
Nucleic Acids Res.
Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda
2009 J jnl
Amino-Acid Residue Association Models for Large Scale Protein-Protein Interaction Prediction.
Silico Biol.
K. Rao Raghuraj, Kyaw Tun, Yuko Makita, Samavedham Lakshminarayanan, Pawan K. Dhar
2009 J jnl
OmicBrowse: a Flash-based high-performance graphics interface for genomic resources.
Nucleic Acids Res.
Akihiro Matsushima, Norio Kobayashi, Yoshiki Mochizuki, Manabu Ishii, Shuji Kawaguchi, Takaho A. Endo, Ryo Umetsu, Yuko Makita, Tetsuro Toyoda
2009 J jnl
PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning.
Nucleic Acids Res.
Yuko Yoshida, Yuko Makita, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda
2008 — conf
A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web.
SWAT4LS
Norio Kobayashi, Yuko Makita, Eli Kaminuma, Shuji Kawaguchi, Yuko Yoshida, Yoshiki Mochizuki, Akihiro Matsushima, Manabu Ishii, Ryo Umetsu, Satomi Asano, Naohiko Heida, Tetsuya Sakurai, Takashi Kuromori, Kazuo Shinozaki, Tetsuro Toyoda
2008 J jnl
DBTBS: a database of transcriptional regulation in
Nucleic Acids Res.
Nicolas Sierro, Yuko Makita, Michiel J. L. de Hoon, Kenta Nakai
2007 J jnl
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes.
BMC Bioinform.
Yuko Makita, Michiel J. L. de Hoon, Antoine Danchin
2007 J jnl
Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions.
Nucleic Acids Res.
Toshiyuki Okumura, Hiroki Makiguchi, Yuko Makita, Riu Yamashita, Kenta Nakai
2005 Misc conf
Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis.
Pacific Symposium on Biocomputing
Yuko Makita, Michiel J. L. de Hoon, Naotake Ogasawara, Satoru Miyano, Kenta Nakai
2005 J jnl
Prediction of Transcriptional Terminators in
PLoS Comput. Biol.
Michiel J. L. de Hoon, Yuko Makita, Kenta Nakai, Satoru Miyano
2004 J jnl
BTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics.
Nucleic Acids Res.
Yuko Makita, Mitsuteru Nakao, Naotake Ogasawara, Kenta Nakai
2004 — conf
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data.
ISMB/ECCB (Supplement of Bioinformatics)
Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Kenta Nakai, Satoru Miyano