Yukiko Matsuoka

16 papers B 1Misc 1Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2016 J jnl
systemsDock: a web server for network pharmacology-based prediction and analysis.
Nucleic Acids Res.
Kun-Yi Hsin, Yukiko Matsuoka, Yoshiyuki Asai, Kyota Kamiyoshi, Tokiko Watanabe, Yoshihiro Kawaoka, Hiroaki Kitano
2013 J jnl
A comprehensive map of the influenza A virus replication cycle.
BMC Syst. Biol.
Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka
2013 — conf
A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation.
EMBC
Yoshiyuki Asai, Takeshi Abe, Hideki Oka, Masao Okita, Tomohiro Okuyama, Kenichi Hagihara, Samik Ghosh, Yukiko Matsuoka, Yoshihisa Kurachi, Hiroaki Kitano
2013 J jnl
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions.
PLoS Comput. Biol.
Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro
2012 J jnl
AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease.
BMC Syst. Biol.
Satoshi Mizuno, Risa Iijima, Soichi Ogishima, Masataka Kikuchi, Yukiko Matsuoka, Samik Ghosh, Tadashi Miyamoto, Akinori Miyashita, Ryozo Kuwano, Hiroshi Tanaka
2012 J jnl
Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs.
BMC Syst. Biol.
Jason E. Shoemaker, Satoshi Fukuyama, Amie J. Eisfeld, Yukiko Muramoto, Shinji Watanabe, Tokiko Watanabe, Yukiko Matsuoka, Hiroaki Kitano, Yoshihiro Kawaoka
2012 J jnl
Software support for SBGN maps: SBGN-ML and LibSBGN.
Bioinform.
Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber
2011 J jnl
BioPAX support in CellDesigner.
Bioinform.
Huaiyu Mi, Anushya Muruganujan, Emek Demir, Yukiko Matsuoka, Akira Funahashi, Hiroaki Kitano, Paul D. Thomas
2011 J jnl
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.
Bioinform.
Tiago J. S. Lopes, Martin H. Schaefer, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro, Yoshihiro Kawaoka, Hiroaki Kitano
2010 J jnl
PathText: a text mining integrator for biological pathway visualizations.
Bioinform.
Brian Kemper, Takuya Matsuzaki, Yukiko Matsuoka, Yoshimasa Tsuruoka, Hiroaki Kitano, Sophia Ananiadou, Jun'ichi Tsujii
2010 J jnl
Payao: a community platform for SBML pathway model curation.
Bioinform.
Yukiko Matsuoka, Samik Ghosh, Norihiro Kikuchi, Hiroaki Kitano
2008 J jnl
CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks.
Proc. IEEE
Akira Funahashi, Yukiko Matsuoka, Akiya Jouraku, Mineo Morohashi, Norihiro Kikuchi, Hiroaki Kitano
2008 B conf
Connecting Text Mining and Pathways using the PathText Resource.
LREC
Rune Sætre, Brian Kemper, Kanae Oda, Naoaki Okazaki, Yukiko Matsuoka, Norihiro Kikuchi, Hiroaki Kitano, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii
2007 J jnl
Integration of CellDesigner and SABIO-RK.
Silico Biol.
Akira Funahashi, Akiya Jouraku, Yukiko Matsuoka, Hiroaki Kitano
2006 Misc conf
CellDesigner: a modeling tool for biochemical networks.
WSC
Akira Funahashi, Yukiko Matsuoka, Akiya Jouraku, Hiroaki Kitano, Norihiro Kikuchi
2004 J jnl
The Story of Pino.
Int. J. Humanoid Robotics
Hiroaki Kitano, Fuminori Yamasaki, Tatsuya Matsui, Ken Endo, Yukiko Matsuoka, Hiroshi Kaminaga, Yuichiro Kato