Yuki Naito

15 papers B 1Journal 12Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Localizatome: a database for stress-dependent subcellular localization changes in proteins.
Database J. Biol. Databases Curation
Takahide Matsushima, Yuki Naito, Tomoki Chiba, Ryota Kurimoto, Keiko Itano, Koji Ochiai, Koichi Takahashi, Naoki Goshima, Hiroshi Asahara
2023 — conf
Quantum Query Lower Bounds for Key Recovery Attacks on the Even-Mansour Cipher.
COCOON (2)
Akinori Kawachi, Yuki Naito
2023 J jnl
Quantum Query Lower Bounds for Key Recovery Attacks on the Even-Mansour Cipher.
CoRR
Akinori Kawachi, Yuki Naito
2022 J jnl
TogoID: an exploratory ID converter to bridge biological datasets.
Bioinform.
Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, Shuichi Kawashima, Yasunori Yamamoto, Shinobu Okamoto, Susumu Goto, Toshiaki Katayama
2021 J jnl
Bowel sound-based features to investigate the effect of coffee and soda on gastrointestinal motility.
Biomed. Signal Process. Control.
Kensuke Horiyama, Takahiro Emoto, Takeyuki Haraguchi, Takashi Uebanso, Yuki Naito, Takuma Gyobu, Kenta Kanemoto, Junichi Inobe, Ayumi Sano, Masatake Akutagawa, Akira Takahashi
2020 J jnl
BioHackathon 2015: Semantics of data for life sciences and reproducible research.
F1000Research
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
2019 J jnl
TogoGenome/TogoStanza: modularized Semantic Web genome database.
Database J. Biol. Databases Curation
Toshiaki Katayama, Shuichi Kawashima, Shinobu Okamoto, Yuki Moriya, Hirokazu Chiba, Yuki Naito, Takatomo Fujisawa, Hiroshi Mori, Toshihisa Takagi
2015 J jnl
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Bioinform.
Yuki Naito, Kimihiro Hino, Hidemasa Bono, Kumiko Ui-Tei
2012 J jnl
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res.
Yuki Naito, Hidemasa Bono
2009 — conf
Hardware-aware model of sigma-delta cellular neural network.
ECCTD
Hisashi Aomori, Yuki Naito, Tsuyoshi Otake, Nobuaki Takahashi, Ichiro Matsuda, Susumu Itoh, Mamoru Tanaka
2009 J jnl
siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect.
BMC Bioinform.
Yuki Naito, Jun Yoshimura, Shinichi Morishita, Kumiko Ui-Tei
2006 J jnl
siVirus: web-based antiviral siRNA design software for highly divergent viral sequences.
Nucleic Acids Res.
Yuki Naito, Kumiko Ui-Tei, Toru Nishikawa, Yutaka Takebe, Kaoru Saigo
2005 J jnl
dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference.
Nucleic Acids Res.
Yuki Naito, Tomoyuki Yamada, Takahiro Matsumiya, Kumiko Ui-Tei, Kaoru Saigo, Shinichi Morishita
2004 J jnl
siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.
Nucleic Acids Res.
Yuki Naito, Tomoyuki Yamada, Kumiko Ui-Tei, Shinichi Morishita, Kaoru Saigo
2003 B conf
Ontology-Based Medical Information Service System.
KES
Hirokazu Taki, Noriyuki Matsuda, Michiyasu Hiramatsu, Yuki Naito, Jiro Nakajima, Tadashi Nakamura, Akihisa Imagawa, Yuji Matsuzawa, Norihiro Abe, Satoshi Hori