Yuji Zhang

24 papers C 1Journal 16Unranked 7
YearRankTypeTitle / Venue / Authors
2022 J jnl
Mining on Alzheimer's diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing.
BMC Bioinform.
Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Larry Bu, Yuji Zhang, Yong Chen, Cui Tao
2021 J jnl
Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery.
CoRR
Yi Nian, Jingcheng Du, Larry Bu, Fang Li, Xinyue Hu, Yuji Zhang, Cui Tao
2019 J jnl
A statistical analysis of vaccine-adverse event data.
BMC Medical Informatics Decis. Mak.
Jian-Jian Ren, Tingni Sun, Yongqun He, Yuji Zhang
2018 J jnl
Adverse event detection by integrating twitter data and VAERS.
J. Biomed. Semant.
Junxiang Wang, Liang Zhao, Yanfang Ye, Yuji Zhang
2015 J jnl
Identification of sex-associated network patterns in Vaccine-Adverse Event Association Network in VAERS.
J. Biomed. Semant.
Yuji Zhang, Puqiang Wu, Yi Luo, Cui Tao
2015 J jnl
Network analysis reveals stage-specific changes in zebrafish embryo development using time course whole transcriptome profiling and prior biological knowledge.
BioData Min.
Yuji Zhang
2015 J jnl
Next generation informatics for big data in precision medicine era.
BioData Min.
Yuji Zhang, Qian Zhu, Hongfang Liu
2014 — conf
Linked Vaccine Adverse Event Data Representation from VAERS for Biomedical Informatics Research.
PAKDD Workshops
Cui Tao, Puqiang Wu, Yuji Zhang
2014 J jnl
Linked vaccine adverse event data from VAERS for biomedical data analysis and longitudinal studies.
BioData Min.
Cui Tao, Puqiang Wu, Yi Luo, Yuji Zhang
2014 J jnl
Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network.
J. Biomed. Semant.
Yuji Zhang, Cui Tao, Guoqian Jiang, Asha A. Nair, Jian Su, Christopher G. Chute, Hongfang Liu
2013 — conf
An integrative computational approach to identify disease-specific networks from PubMed literature information.
BIBM
Yuji Zhang, Dingcheng Li, Cui Tao, Feichen Shen, Hongfang Liu
2013 — conf
Analysis of Vaccine-related Networks using Semantic MEDLINE and the Vaccine Ontology.
VDOS+DO@ICBO
Yuji Zhang, Cui Tao, Yongqun He, Pradip Kanjamala, Hongfang Liu
2013 J jnl
Calculating Sample Size Estimates for RNA Sequencing Data.
J. Comput. Biol.
Steven N. Hart, Terry M. Therneau, Yuji Zhang, Gregory A. Poland, Jean-Pierre A. Kocher
2013 J jnl
Module-based breast cancer classification.
Int. J. Data Min. Bioinform.
Yuji Zhang, Jianhua Xuan, Robert Clarke, Habtom W. Ressom
2013 J jnl
Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology.
J. Biomed. Semant.
Yuji Zhang, Cui Tao, Yongqun He, Pradip Kanjamala, Hongfang Liu
2012 J jnl
Identification of aberrant pathways and network activities from high-throughput data.
Briefings Bioinform.
Jinlian Wang, Yuji Zhang, Catalin Marian, Habtom W. Ressom
2012 — conf
Optimizing semantic MEDLINE for translational science studies using semantic web technologies.
MIX-HS
Cui Tao, Yuji Zhang, Guoqian Jiang, Matt-Mouley Bouamrane, Christopher G. Chute
2012 J jnl
SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.
Bioinform.
Zhifu Sun, Saurabh Baheti, Sumit Middha, Rahul Kanwar, Yuji Zhang, Xing Li, Andreas S. Beutler, Eric W. Klee, Yan W. Asmann, E. Aubrey Thompson, Jean-Pierre A. Kocher
2012 J jnl
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.
Bioinform.
Yan W. Asmann, Sumit Middha, Asif Hossain, Saurabh Baheti, Ying Li, High-Seng Chai, Zhifu Sun, Patrick H. Duffy, Ahmed A. Hadad, Asha A. Nair, Xiaoyu Liu, Yuji Zhang, Eric W. Klee, Krishna R. Kalari, Jean-Pierre A. Kocher
2010 — conf
Module-based biomarker discovery in breast cancer.
BIBM
Yuji Zhang, Jianhua Jason Xuan, Robert Clarke, Habtom W. Ressom
2008 J jnl
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
BMC Bioinform.
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom
2008 — conf
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling.
BIOCOMP
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom
2006 C conf
Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence.
CIBCB
Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Joseph Wang, Robert Clarke
2006 — conf
Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence.
EMBC
Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Wang, Robert Clarke