Yuichi Shiraishi

17 papers B 1Journal 14Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
mm2-ivh: simple and precise overlap detection in alpha satellite HORs with interval hashing.
Bioinform.
Hajime Suzuki, Masahiro Sugawa, Yoshitaka Sakamoto, Yuichi Shiraishi
2020 J jnl
Genomic basis for RNA alterations in cancer.
Nat.
Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks
2019 J jnl
A Bayesian model integration for mutation calling through data partitioning.
Bioinform.
Takuya Moriyama, Seiya Imoto, Shuto Hayashi, Yuichi Shiraishi, Satoru Miyano, Rui Yamaguchi
2018 J jnl
hotsub: A batch job engine for cloud services with ETL framework.
J. Open Source Softw.
Hiromu Ochiai, Kenichi Chiba, Ai Okada, Yuichi Shiraishi
2017 J jnl
A Novel Adaptive Penalized Logistic Regression for Uncovering Biomarker Associated with Anti-Cancer Drug Sensitivity.
IEEE ACM Trans. Comput. Biol. Bioinform.
Heewon Park, Yuichi Shiraishi, Seiya Imoto, Satoru Miyano
2017 J jnl
A framework for generating interactive reports for cancer genome analysis.
J. Open Source Softw.
Ai Okada, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Yuichi Shiraishi
2016 — conf
OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads.
ISBRA
Takuya Moriyama, Yuichi Shiraishi, Kenichi Chiba, Rui Yamaguchi, Seiya Imoto, Satoru Miyano
2015 J jnl
Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data.
Bioinform.
Kenichi Chiba, Yuichi Shiraishi, Yasunobu Nagata, Kenichi Yoshida, Seiya Imoto, Seishi Ogawa, Satoru Miyano
2015 — conf
High performance computing of a fusion gene detection pipeline on the K computer.
BIBM
Satoshi Ito, Yuichi Shiraishi, Teppei Shimamura, Kenichi Chiba, Satoru Miyano
2014 J jnl
HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations.
Bioinform.
Naoto Usuyama, Yuichi Shiraishi, Yusuke Sato, Haruki Kume, Yukio Homma, Seishi Ogawa, Satoru Miyano, Seiya Imoto
2011 J jnl
A rank-based statistical test for measuring synergistic effects between two gene sets.
Bioinform.
Yuichi Shiraishi, Mariko Okada-Hatakeyama, Satoru Miyano
2011 J jnl
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information.
BMC Bioinform.
Shin Suzuki, Tomohiro Yasuda, Yuichi Shiraishi, Satoru Miyano, Masao Nagasaki
2011 J jnl
Statistical approaches to combining binary classifiers for multi-class classification.
Neurocomputing
Yuichi Shiraishi, Kenji Fukumizu
2010 J jnl
Inference of Genetic Networks Using Lpms: Assessment of Confidence Values of Regulations.
J. Bioinform. Comput. Biol.
Shuhei Kimura, Yuichi Shiraishi, Mariko Okada
2010 J jnl
Inferring cluster-based networks from differently stimulated multiple time-course gene expression data.
Bioinform.
Yuichi Shiraishi, Shuhei Kimura, Mariko Okada
2009 B conf
Inference of genetic networks using linear programming machines: Application of a priori knowledge.
IJCNN
Shuhei Kimura, Yuichi Shiraishi, Mariko Hatakeyama
2008 J jnl
Game theoretical analysis of the simple one-vs.-all classifier.
Neurocomputing
Yuichi Shiraishi