Yuguang Mu

22 papers Journal 20Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Could statistical potential models achieve comparable or better performance than deep learning models?
Briefings Bioinform.
Zhihao Wang, Sheng Wang, Jingjing Guo, Yuguang Mu, Xiangdong Liu, Liangzhen Zheng, Weifeng Li
2025 J jnl
BridgeNet: a high-efficiency framework integrating sequence and structure for protein and enzyme function prediction.
Briefings Bioinform.
Yilin Ye, Hongliang Duan, Yuguang Mu, Lei Wu, Jingjing Guo
2025 J jnl
Evaluations of the Perturbation Resistance of the Deep-Learning-Based Ligand Conformation Optimization Algorithm.
J. Chem. Inf. Model.
Minghui Xin, Zechen Wang, Zhihao Wang, Yuanyuan Qu, Yanmei Yang, Yong-Qiang Li, Ming-Wen Zhao, Liangzhen Zheng, Yuguang Mu, Weifeng Li
2024 J jnl
A new paradigm for applying deep learning to protein-ligand interaction prediction.
Briefings Bioinform.
Zechen Wang, Sheng Wang, Yangyang Li, Jingjing Guo, Yanjie Wei, Yuguang Mu, Liangzhen Zheng, Weifeng Li
2024 J jnl
Advancing Bioactivity Prediction Through Molecular Docking and Self-Attention.
IEEE J. Biomed. Health Informatics
Yueming Yin, Hilbert Yuen In Lam, Yuguang Mu, Hoi-Yeung Li, Adams Wai-Kin Kong
2024 J jnl
OpenDock: a pytorch-based open-source framework for protein-ligand docking and modelling.
Bioinform.
Qiuyue Hu, Zechen Wang, Jintao Meng, Weifeng Li, Jingjing Guo, Yuguang Mu, Sheng Wang, Liangzhen Zheng, Yanjie Wei
2024 J jnl
Pharmacophore-constrained de novo drug design with diffusion bridge.
CoRR
Conghao Wang, Yuguang Mu, Jagath C. Rajapakse
2024 J jnl
ProAffinity-GNN: A Novel Approach to Structure-Based Protein-Protein Binding Affinity Prediction via a Curated Data Set and Graph Neural Networks.
J. Chem. Inf. Model.
Zhiyuan Zhou, Yueming Yin, Hao Han, Yiping Jia, Jun Hong Koh, Adams Wai-Kin Kong, Yuguang Mu
2024 J jnl
Protein language models are performant in structure-free virtual screening.
Briefings Bioinform.
Hilbert Yuen In Lam, Jia Sheng Guan, Xing Er Ong, Robbe Pincket, Yuguang Mu
2024 J jnl
Protein solubility prediction through structure and sequence-based embeddings.
Commun. Inf. Syst.
Shikhar Saxena, Yuguang Mu
2024 J jnl
RmsdXNA: RMSD prediction of nucleic acid-ligand docking poses using machine-learning method.
Briefings Bioinform.
Lai Heng Tan, Chee Keong Kwoh, Yuguang Mu
2024 J jnl
Systematic benchmarking of deep-learning methods for tertiary RNA structure prediction.
PLoS Comput. Biol.
Akash Bahai, Chee Keong Kwoh, Yuguang Mu, Yinghui Li
2023 J jnl
A fully differentiable ligand pose optimization framework guided by deep learning and a traditional scoring function.
Briefings Bioinform.
Zechen Wang, Liangzhen Zheng, Sheng Wang, Mingzhi Lin, Zhihao Wang, Adams Wai-Kin Kong, Yuguang Mu, Yanjie Wei, Weifeng Li
2023 J jnl
Application of variational graph encoders as an effective generalist algorithm in computer-aided drug design.
Nat. Mac. Intell.
Hilbert Yuen In Lam, Robbe Pincket, Hao Han, Xing Er Ong, Zechen Wang, Jamie Hinks, Yanjie Wei, Weifeng Li, Liangzhen Zheng, Yuguang Mu
2022 J jnl
Improving protein-ligand docking and screening accuracies by incorporating a scoring function correction term.
Briefings Bioinform.
Liangzhen Zheng, Jintao Meng, Kai Jiang, Haidong Lan, Zechen Wang, Mingzhi Lin, Weifeng Li, Hongwei Guo, Yanjie Wei, Yuguang Mu
2019 — ch.
Molecular Dynamics and Simulation.
Encyclopedia of Bioinformatics and Computational Biology (2)
Liangzhen Zheng, Amr Alhossary, Chee-Keong Kwoh, Yuguang Mu
2019 J jnl
The Necessity of d-Thr in the New Antibiotic Teixobactin: A Molecular Dynamics Study.
J. Chem. Inf. Model.
Yang Liu, Weifeng Li, Mary B. Chan-Park, Yuguang Mu
2018 J jnl
Proposing drug fragments for dengue virus NS5 protein.
J. Bioinform. Comput. Biol.
Amr Alhossary, Yaw Awuni, Chee Keong Kwoh, Yuguang Mu
2015 J jnl
Fast, accurate, and reliable molecular docking with QuickVina 2.
Bioinform.
Amr Alhossary, Stephanus Daniel Handoko, Yuguang Mu, Chee Keong Kwoh
2012 — conf
Accurate detection of SNPs using base-specific cleavage and mass spectrometry.
BIBM
Ruimin Sun, Xiang Gao, Nanyu Han, Qiong Wu, Yuguang Mu, Kai Tang, Xin Chen
2011 J jnl
Dynamically-Driven Inactivation of the Catalytic Machinery of the SARS 3C-Like Protease by the N214A Mutation on the Extra Domain.
PLoS Comput. Biol.
Jiahai Shi, Nanyu Han, Liangzhong Lim, Shixiong Lua, J. Sivaraman, Lushan Wang, Yuguang Mu, Jianxing Song
2009 J jnl
Amyloidogenesis Abolished by Proline Substitutions but Enhanced by Lipid Binding.
PLoS Comput. Biol.
Ping Jiang, Weixin Xu, Yuguang Mu