Yufei Huang - RankMe

157 papers A* 3B 11Misc 6Journal 64Unranked 72

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	FigEx2: Visual-Conditioned Panel Detection and Captioning for Scientific Compound Figures. CoRR Jifeng Song, Arun Das, Pan Wang, Hui Ji, Kun Zhao, Yufei Huang
2025	J	`jnl`	A comparative evaluation of computational models for RNA modification detection using nanopore sequencing with RNA004 chemistry. Briefings Bioinform. Yongji Zou, Mian Umair Ahsan, Joe Chan, Wen Meng, Shou-Jiang Gao, Yufei Huang, Kai Wang
2025	—	`conf`	BioGraphia: A LLM-Assisted Biological Pathway Graph Annotation Platform. EMNLP (System Demonstrations) Xi Xu, Sumin Jo, Adam Officer, Angela Chen, Yufei Huang, Lei Li
2025	J	`jnl`	Deep EEG Super-Resolution: Upsampling EEG Spatial Resolution with Generative Adversarial Networks. CoRR Isaac Corley, Yufei Huang
2025	—	`conf`	FigEx: Aligned Extraction of Scientific Figures and Captions. EMNLP (Findings) Jifeng Song, Arun Das, Ge Cui, Yufei Huang
2024	—	`conf`	MetaphorPrompt - An Analogical Reasoning Approach for Extracting Causal Links from Biological Text. BCB Parth Patel, Yu-Chiao Chiu, Yufei Huang, Jianqiu Zhang
2024	—	`conf`	ReguloGPT: Harnessing GPT for End-to-End Knowledge Graph Construction of Molecular Regulatory Pathways. BHI Xidong Wu, Sumin Jo, Yiming Zeng, Arun Das, Tinghe Zhang, Parth Patel, Yuanjing Wei, Lei Li, Shou-Jiang Gao, Jianqiu Zhang, Dexter Pratt, Yu-Chiao Chiu, Yufei Huang
2024	J	`jnl`	Understanding YTHDF2-mediated mRNA degradation by m6A-BERT-Deg. Briefings Bioinform. Tinghe Zhang, Sumin Jo, Michelle Zhang, Kai Wang, Shou-Jiang Gao, Yufei Huang
2024	J	`jnl`	shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning. Patterns Li-Ju Wang, Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang, Yidong Chen, Yu-Chiao Chiu
2023	J	`jnl`	Fair Patient Model: Mitigating Bias in the Patient Representation Learned from the Electronic Health Records. CoRR Sonish Sivarajkumar, Yufei Huang, Yanshan Wang
2023	J	`jnl`	Fair patient model: Mitigating bias in the patient representation learned from the electronic health records. J. Biomed. Informatics Sonish Sivarajkumar, Yufei Huang, Yanshan Wang
2023	J	`jnl`	Leveraging Foundation Models to Improve Lightweight Clients in Federated Learning. CoRR Xidong Wu, Wan-Yi Lin, Devin Willmott, Filipe Condessa, Yufei Huang, Zhenzhen Li, Madan Ravi Ganesh
2022	—	`conf`	Administration of Machine Learning Based Access Control. ESORICS (2) Mohammad Nur Nobi, Ram Krishnan, Yufei Huang, Ravi S. Sandhu
2022	J	`jnl`	Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis. Briefings Bioinform. Mario Flores, Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu-Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou-Jiang Gao, Yu-Fang Jin, Yidong Chen, Yufei Huang
2022	J	`jnl`	On the role of deep learning model complexity in adversarial robustness for medical images. BMC Medical Informatics Decis. Mak. David Rodriguez, Tapsya Nayak, Yidong Chen, Ram Krishnan, Yufei Huang
2022	—	`conf`	Toward Deep Learning Based Access Control. CODASPY Mohammad Nur Nobi, Ram Krishnan, Yufei Huang, Mehrnoosh Shakarami, Ravi S. Sandhu
2022	J	`jnl`	Toward Deep Learning Based Access Control. CoRR Mohammad Nur Nobi, Ram Krishnan, Yufei Huang, Mehrnoosh Shakarami, Ravi S. Sandhu
2021	B	`conf`	Access Control Policy Generation from User Stories Using Machine Learning. DBSec John Heaps, Ram Krishnan, Yufei Huang, Jianwei Niu, Ravi S. Sandhu
2021	J	`jnl`	CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training. BMC Bioinform. Milad Mostavi, Yu-Chiao Chiu, Yidong Chen, Yufei Huang
2021	—	`ed.`	IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, Houston, TX, USA, December 9-12, 2021 BIBM Yufei Huang, Lukasz A. Kurgan, Feng Luo, Xiaohua Hu, Yidong Chen, Edward R. Dougherty, Andrzej Kloczkowski, Yaohang Li
2021	A*	`conf`	Interpretable Self-Supervised Facial Micro-Expression Learning to Predict Cognitive State and Neurological Disorders. AAAI Arun Das, Jeffrey Mock, Yufei Huang, Edward J. Golob, Peyman Najafirad
2020	A*	`conf`	Automatic Detection and Prediction of Cybersickness Severity using Deep Neural Networks from user's Physiological Signals. ISMAR Rifatul Islam, Yonggun Lee, Mehrad Jaloli, Imtiaz Muhammad, Dakai Zhu, Paul Rad, Yufei Huang, John Quarles
2020	J	`jnl`	Deep learning of pharmacogenomics resources: moving towards precision oncology. Briefings Bioinform. Yu-Chiao Chiu, Hung-I Harry Chen, Aparna Gorthi, Milad Mostavi, Siyuan Zheng, Yufei Huang, Yidong Chen
2019	B	`conf`	A Semi-Supervised Wasserstein Generative Adversarial Network for Classifying Driving Fatigue from EEG signals. SMC Sharaj Panwar, Paul Rad, John Quarles, Edward J. Golob, Yufei Huang
2019	—	`conf`	Charactering hESCs Organoids from Electrical Signals with Machine Learning. BHI Md Musaddaqul Hasib, Zane Lybrand, Vanesa Nieto Estevez, Jenny Hsieh, Yufei Huang
2019	J	`jnl`	Convolutional neural network models for cancer type prediction based on gene expression. CoRR Milad Mostavi, Yu-Chiao Chiu, Yufei Huang, Yidong Chen
2019	J	`jnl`	Feature Selection of Deep Learning Models for EEG-Based RSVP Target Detection. IEICE Trans. Inf. Syst. Jingxia Chen, Zijing Mao, Ru Zheng, Yufei Huang, Lifeng He
2019	J	`jnl`	FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes. Bioinform. Song-Yao Zhang, Shao-Wu Zhang, Xiao-Nan Fan, Teng Zhang, Jia Meng, Yufei Huang
2019	B	`conf`	Generating EEG signals of an RSVP Experiment by a Class Conditioned Wasserstein Generative Adversarial Network. SMC Sharaj Panwar, Paul Rad, John Quarles, Yufei Huang
2019	J	`jnl`	Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods. PLoS Comput. Biol. Song-Yao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Shou-Jiang Gao, Yufei Huang
2019	J	`jnl`	Modeling EEG data distribution with a Wasserstein Generative Adversarial Network to predict RSVP Events. CoRR Sharaj Panwar, Paul Rad, Tzyy-Ping Jung, Yufei Huang
2019	B	`conf`	Predicting Auditory Spatial Attention from EEG using Single- and Multi-task Convolutional Neural Networks. SMC Zhentao Liu, Jeffrey Mock, Yufei Huang, Edward J. Golob
2019	B	`conf`	Target Classification in a Novel SSVEP-RSVP Based BCI Gaming System. SMC Tapsya Nayak, Li-Wei Ko, Tzyy-Ping Jung, Yufei Huang
2018	J	`jnl`	A Bayesian framework for the inference of gene regulatory networks from time and pseudo-time series data. Bioinform. Manuel Sanchez-Castillo, David Blanco, Isabel M. Tienda-Luna, Maria Carmen Carrion Perez, Yufei Huang
2018	—	`conf`	A Machine Learning Approach for Uncovering N6-methyladenosine-Disease Association. BCB Songyao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Yufei Huang
2018	—	`conf`	A hierarchical LSTM model with attention for modeling EEG non-stationarity for human decision prediction. BHI Md Musaddaqul Hasib, Tapsya Nayak, Yufei Huang
2018	J	`jnl`	Base-pair resolution detection of transcription factor binding site by deep deconvolutional network. Bioinform. Sirajul Salekin, Jianqiu (Michelle) Zhang, Yufei Huang
2018	—	`conf`	CLIPSeed: Achieving High Precision miRNA Binding Sites Prediction using PAR-CLIP Data. BIBM Mingzhu Lu, Yufei Huang
2018	—	`conf`	Deep EEG super-resolution: Upsampling EEG spatial resolution with Generative Adversarial Networks. BHI Isaac A. Corley, Yufei Huang
2018	J	`jnl`	Deep Learning Models for EEG-based Rapid Serial Visual Presentation Event Classification. J. Inf. Hiding Multim. Signal Process. Fuquan Zhang, Zijing Mao, Yufei Huang, Lin Xu, Gangyi Ding
2018	—	`conf`	Deep-2'-O-Me: Predicting 2'-O-methylation sites by Convolutional Neural Networks. EMBC Milad Mostavi, Sirajul Salekin, Yufei Huang
2018	J	`jnl`	GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization. CoRR Hung-I Harry Chen, Yu-Chiao Chiu, Tinghe Zhang, Songyao Zhang, Yufei Huang, Yidong Chen
2018	—	`conf`	Generating target/non-target images of an RSVP experiment from brain signals in by conditional generative adversarial network. BHI Yonggun Lee, Yufei Huang
2018	—	`conf`	Malware Detection in Cloud Infrastructures Using Convolutional Neural Networks. IEEE CLOUD Mahmoud Abdelsalam, Ram Krishnan, Yufei Huang, Ravi S. Sandhu
2018	J	`jnl`	MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome. Nucleic Acids Res. Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang
2018	J	`jnl`	MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data. IEEE ACM Trans. Comput. Biol. Bioinform. Xiaodong Cui, Lin Zhang, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
2018	J	`jnl`	Predicting drug response of tumors from integrated genomic profiles by deep neural networks. CoRR Yu-Chiao Chiu, Hung-I Harry Chen, Tinghe Zhang, Songyao Zhang, Aparna Gorthi, Li-Ju Wang, Yufei Huang, Yidong Chen
2017	—	`conf`	A deep learning model for predicting transcription factor binding location at single nucleotide resolution. BHI Sirajul Salekin, Jianqiu (Michelle) Zhang, Yufei Huang
2017	J	`jnl`	Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net. IEEE ACM Trans. Comput. Biol. Bioinform. Lin Zhang, Hui Liu, Yufei Huang, Xuesong Wang, Yidong Chen, Jia Meng
2017	—	`conf`	Deep Transfer Learning for Cross-subject and Cross-experiment Prediction of Image Rapid Serial Visual Presentation Events from EEG Data. HCI (14) Mehdi Hajinoroozi, Zijing Mao, Yuan-Pin Lin, Yufei Huang
2017	—	`conf`	Design of deep convolutional networks for prediction of image rapid serial visual presentation events. EMBC Zijing Mao, Wan Xiang Yao, Yufei Huang
2017	B	`conf`	Driver's fatigue prediction by deep covariance learning from EEG. SMC Mehdi Hajinoroozi, Jianqiu (Michelle) Zhang, Yufei Huang
2017	—	`conf`	EEG-based biometric identification with deep learning. NER Zijing Mao, Wan Xiang Yao, Yufei Huang
2017	—	`conf`	Prediction of fatigue-related driver performance from EEG data by deep Riemannian model. EMBC Mehdi Hajinoroozi, Jianqiu (Michelle) Zhang, Yufei Huang
2017	—	`conf`	Prediction of temperature induced office worker's performance during typing task using EEG. EMBC Tapsya Nayak, Tinghe Zhang, Zijing Mao, Xiaojing Xu, Daniel J. Pack, Bing Dong, Yufei Huang
2017	J	`jnl`	QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model. BMC Bioinform. Lian Liu, Shao-Wu Zhang, Yufei Huang, Jia Meng
2016	J	`jnl`	A novel algorithm for calling mRNA m Bioinform. Xiaodong Cui, Jia Meng, Shaowu Zhang, Yidong Chen, Yufei Huang
2016	J	`jnl`	Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine (ICIBM) 2015. BMC Syst. Biol. Zhongming Zhao, Yunlong Liu, Yufei Huang, Kun Huang, Jianhua Ruan
2016	—	`conf`	Detection of control or idle state with a likelihood ratio test in asynchronous SSVEP-based brain-computer interface systems. EMBC Lenis Mauricio Merino, Tapsya Nayak, Garrett Hall, Daniel J. Pack, Yufei Huang
2016	J	`jnl`	EEG-based prediction of driver's cognitive performance by deep convolutional neural network. Signal Process. Image Commun. Mehdi Hajinoroozi, Zijing Mao, Tzyy-Ping Jung, Chin-Teng Lin, Yufei Huang
2016	—	`conf`	Predicting EEG Sample Size Required for Classification Calibration. HCI (13) Zijing Mao, Tzyy-Ping Jung, Chin-Teng Lin, Yufei Huang
2016	J	`jnl`	m6A-Driver: Identifying Context-Specific mRNA m6A Methylation-Driven Gene Interaction Networks. PLoS Comput. Biol. Song-Yao Zhang, Shao-Wu Zhang, Lian Liu, Jia Meng, Yufei Huang
2015	—	`conf`	Feature extraction with deep belief networks for driver's cognitive states prediction from EEG data. ChinaSIP Mehdi Hajinoroozi, Tzyy-Ping Jung, Chin-Teng Lin, Yufei Huang
2015	J	`jnl`	MeT-DB: a database of transcriptome methylation in mammalian cells. Nucleic Acids Res. Hui Liu, Mario A. Flores, Jia Meng, Lin Zhang, Xinyu Zhao, Manjeet K. Rao, Yidong Chen, Yufei Huang
2015	—	`conf`	Modeling of replicates variances for detecting RNA methylation site in MERIP-SEQ data. ChinaSIP Xiaodong Cui, Jia Meng, Shaowu Zhang, Yufei Huang
2015	—	`conf`	Prediction of driver's drowsy and alert states from EEG signals with deep learning. CAMSAP Mehdi Hajinoroozi, Zijing Mao, Yufei Huang
2015	—	`conf`	Sketching the distribution of transcriptomic features on RNA transcripts with Travis coordinates. BIBM Xiaodong Cui, Zhen Wei, Lin Zhang, Hui Liu, Lei Sun, Shaowu Zhang, Yufei Huang, Jia Meng
2014	J	`jnl`	BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data. BMC Bioinform. Zijing Mao, Chifeng Ma, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang
2014	J	`jnl`	Classification of Imperfectly Time-Locked Image RSVP Events with EEG Device. Neuroinformatics Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang
2014	—	`conf`	Classification of non-time-locked rapid serial visual presentation events for brain-computer interaction using deep learning. ChinaSIP Zijing Mao, Vernon Lawhern, Lenis Mauricio Merino, Kenneth Ball, Li Deng, Brent J. Lance, Kay Robbins, Yufei Huang
2014	—	`conf`	Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test. GlobalSIP Lin Zhang, Jia Meng, Hui Liu, Xiaodong Cui, Shao-Wu Zhang, Yidong Chen, Yufei Huang
2014	—	`conf`	Differential analysis of RNA methylome with improved spatial resolution. GlobalSIP Yu-Chen Zhang, Shao-Wu Zhang, Lian Liu, Lin Zhang, Hui Liu, Xiaodong Cui, Yufei Huang, Jia Meng
2014	J	`jnl`	Selected Articles from the 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS 2012). IEEE ACM Trans. Comput. Biol. Bioinform. Yufei Huang, Yidong Chen, Xiaoning Qian
2013	—	`conf`	A Deep Learning method for classification of images RSVP events with EEG data. GlobalSIP Shaheen Ahmed, Lenis Mauricio Merino, Zijing Mao, Jia Meng, Kay Robbins, Yufei Huang
2013	Misc	`conf`	A bag-of-words model for task-load prediction from EEG in complex environments. ICASSP Lenis Mauricio Merino, Jia Meng, Stephen M. Gordon, Brent J. Lance, Tony Johnson, Victor Paul, Kay Robbins, Jean M. Vettel, Yufei Huang
2013	—	`conf`	A system based approach to construct a Kaposi sarcoma-associated herpesvirus (KSHV) specific pathway crosstalk network. SoSE Amy Wafa Daali, Yufei Huang, Mo Jamshidi
2013	—	`conf`	An HMM-based Exome Peak-finding package for RNA epigenome sequencing data. GENSiPS Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
2013	—	`conf`	BIMMER: A Bi-layer hidden Markov model for differential methylation analysis. BIBM Zijing Mao, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang
2013	J	`jnl`	BRCA-Monet: a breast cancer specific drug treatment mode-of-action network for treatment effective prediction using large scale microarray database. BMC Syst. Biol. Chifeng Ma, Hung-I Harry Chen, Mario Flores, Yufei Huang, Yidong Chen
2013	—	`conf`	Bayesian sparse factor model for transcriptional regulatory networks inference. EUSIPCO Manuel Sanchez-Castillo, Isabel M. Tienda-Luna, David Blanco, Maria Carmen Carrion Perez, Yufei Huang
2013	J	`jnl`	Computational and Statistical Approaches for Modeling of Proteomic and Genomic Networks. Adv. Bioinformatics Mohamed N. Nounou, Hazem N. Nounou, Erchin Serpedin, Aniruddha Datta, Yufei Huang
2013	—	`conf`	Differential analysis of rna methylation sequencing data. GlobalSIP Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
2013	J	`jnl`	Exome-based analysis for RNA epigenome sequencing data. Bioinform. Jia Meng, Xiaodong Cui, Manjeet K. Rao, Yidong Chen, Yufei Huang
2013	J	`jnl`	Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis. Adv. Bioinformatics Mario Flores, Tzu-Hung Hsiao, Yu-Chiao Chiu, Eric Y. Chuang, Yufei Huang, Yidong Chen
2013	—	`conf`	Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer. BIBM Lin Zhang, Hui Liu, Jia Meng, Xuesong Wang, Yidong Chen, Yufei Huang
2013	—	`conf`	NetceRNA: An algorithm for construction of phenotype-specific regulation networks via competing endogenous RNAs. GENSiPS Mario Flores, Yufei Huang, Yidong Chen
2013	—	`conf`	Unveiling the dynamics in RNA epigenetic regulations. BIBM Jia Meng, Xiaodong Cui, Hui Liu, Lin Zhang, Shaowu Zhang, Manjeet K. Rao, Yidong Chen, Yufei Huang
2012	—	`conf`	A new algorithm for predicting competing endogenous rnas. GENSiPS Mario Flores, Yufei Huang
2012	J	`jnl`	Advances in systems biology: computational algorithms and applications. BMC Syst. Biol. Yufei Huang, Zhongming Zhao, Hua Xu, Yu Shyr, Bing Zhang
2012	—	`conf`	An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer. GENSiPS Lin Zhang, Hui Liu, Tzu-Hung Hsiao, Yidong Chen, Yufei Huang
2012	—	`conf`	Basis-expansion factor models for uncovering transcription factor regulatory network. SSP Manuel Sanchez-Castillo, Jia Meng, Isabel M. Tienda-Luna, Yufei Huang
2012	—	`conf`	Classification of EEG recordings without perfectly time-locked events. SSP Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang
2012	—	`conf`	Exploiting correlated discriminant features in time frequency and space for characterization and robust classification of image RSVP events with EEG data. SSP Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang
2012	J	`jnl`	Iterative decoding in Factor Graph representation using Particle Filtering. Digit. Signal Process. Isabel M. Tienda-Luna, Diego P. Ruiz, Yufei Huang, María C. Carrión
2012	J	`jnl`	Temporal clustering of gene expression patterns using short-time segments. Int. J. Funct. Informatics Pers. Medicine Nguyen T. Nguyen, Ying Ann Chiao, Yufei Huang, Shou-Jiang Gao, Merry Lindsey, Yidong Chen, Yufang Jin
2012	J	`jnl`	Understanding MicroRNA Regulation: A computational perspective. IEEE Signal Process. Mag. Dong Yue, Jia Meng, Mingzhu Lu, C. L. Philip Chen, Maozu Guo, Yufei Huang
2011	J	`jnl`	Bayesian parameter estimation for nonlinear modelling of biological pathways. BMC Syst. Biol. Omid Ghasemi, Merry Lindsey, Tianyi Yang, Nguyen T. Nguyen, Yufei Huang, Yufang Jin
2011	—	`conf`	Beyond seed match: Improving miRNA target prediction using PAR-CLIP data. GENSiPS Mingzhu Lu, C. L. Philip Chen, Yufei Huang
2011	—	`conf`	Clustering DNA methylation expressions using nonparametric beta mixture model. GENSiPS Lin Zhang, Jia Meng, Hui Liu, Yufei Huang
2011	—	`conf`	Comprehensive investigation of connectivity map data-towards a drug mode of action network for personalized thnerapy. BIBM Workshops Chifeng Ma, Yufei Huang, Huang-I Harry, Yidong Chen
2011	—	`conf`	Computational prediction of microRNA regulatory pathways. GENSiPS Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang
2011	—	`conf`	Gene sets enrichment analysis of miRNA expression profile. BIBM Workshops Tzu-Hung Hsiao, Hung-I Harry Chen, Patricia C. Sanchez-Diaz, Jaclyn Y. Hung, Yidong Chen, Yufei Huang
2011	Misc	`conf`	Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model. ICASSP Jia Meng, Hung-I Chen, Jianqiu Zhang, Yidong Chen, Yufei Huang
2010	—	`conf`	A Bayesian decision fusion approach for microRNA target prediction. BCB Dong Yue, Hui Liu, Mingzhu Lu, Philip Chen, Yidong Chen, Yufei Huang
2010	—	`conf`	A computational framework for predicting drug Mode-of-Action. BIBM Workshops Chifeng Ma, Hung-I Harry Chen, Yufei Huang, Yidong Chen
2010	—	`conf`	An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks. BIBM Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang
2010	—	`conf`	An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks. GENSiPS Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang
2010	J	`jnl`	Bayesian peptide peak detection for high resolution TOF mass spectrometry. IEEE Trans. Signal Process. Jianqiu Zhang, Xiaobo Zhou, Honghui Wang, Anthony Suffredini, Lin Zhang, Yufei Huang, Stephen T. C. Wong
2010	—	`conf`	Computational prediction of MicroRNA regulatory pathways. BIBM Workshops Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang
2010	—	`conf`	Constructing a compound mode-of-action network for personalized drug effectiveness prediction. BCB Chifeng Ma, Hung-I Harry Chen, Yufei Huang, Yidong Chen
2010	J	`jnl`	Improving performance of mammalian microRNA target prediction. BMC Bioinform. Hui Liu, Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang
2010	—	`conf`	SysMicrO: A Novel Systems Approach for miRNA Target Prediction. ICIC (2) Hui Liu, Lin Zhang, Qilong Sun, Yidong Chen, Yufei Huang
2010	—	`conf`	Temporal clustering of gene expression patterns using short-time segments. BIBM Workshops Nguyen T. Nguyen, Yufang Jin, Yufei Huang, Ying Ann Chiao, Shou-Jiang Gao, Merry Lindsey, Yidong Chen
2010	J	`jnl`	Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model. EURASIP J. Adv. Signal Process. Jia Meng, Jianqiu (Michelle) Zhang, Yuan (Alan) Qi, Yidong Chen, Yufei Huang
2010	—	`conf`	miRNA Target Prediction Method Based on the Combination of Multiple Algorithms. ICIC (1) Lin Zhang, Hui Liu, Dong Yue, Hui He, Yufei Huang
2009	—	`conf`	A Bayesian Approach for Identifying miRNA Targets by Combining Sequence Prediction and Expression Profiling. IJCBS Hui Liu, Lin Zhang, Shou-Jiang Gao, Yufei Huang
2009	—	`conf`	A comprehensive study of a SVM-based miRNA target prediction algorithm. GENSiPS Hui Liu, Dong Yue, Yidong Chen, Yufei Huang
2009	J	`jnl`	Adaptive Sensor Fault Detection and Identification Using Particle Filter Algorithms. IEEE Trans. Syst. Man Cybern. Part C Tao Wei, Yufei Huang, C. L. Philip Chen
2009	J	`jnl`	Applications of Signal Processing Techniques to Bioinformatics, Genomics, and Proteomics. EURASIP J. Bioinform. Syst. Biol. Erchin Serpedin, Javier Garcia-Frías, Yufei Huang, Ulisses M. Braga-Neto
2009	J	`jnl`	Clustering of Gene Expression Data Based on Shape Similarity. EURASIP J. Bioinform. Syst. Biol. Travis J. Hestilow, Yufei Huang
2009	J	`jnl`	Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules. Bioinform. Jia Meng, Shou-Jiang Gao, Yufei Huang
2009	—	`conf`	Mapping miRNA Regulation to Functional Gene Sets. IJCBS Yidong Chen, Hung-I Harry Chen, Yufei Huang
2009	J	`jnl`	Reverse engineering gene regulatory networks. IEEE Signal Process. Mag. Yufei Huang, Isabel M. Tienda-Luna, Yufeng Wang
2008	Misc	`conf`	Bayesian peak detection for Pro-TOF MS MALDI data. ICASSP Jianqiu Zhang, Honghui Wang, Anthony Suffredini, Denise Gonzales, Elias Gonzalez, Yufei Huang, Xiaobo Zhou
2008	J	`jnl`	Constructing Gene Networks Using Variational Bayesian Variable Selection. Artif. Life Isabel M. Tienda-Luna, Yufang Yin, Yufei Huang, Diego Pablo Ruiz Padillo, Maria Carmen Carrion Perez, Yufeng Wang
2007	J	`jnl`	Bayesian Inference of Genetic Regulatory Networks from Time Series Microarray Data Using Dynamic Bayesian Networks. J. Multim. Yufei Huang, Jianyin Wang, Jianqiu Zhang, Maribel Sanchez, Yufeng Wang
2007	—	`conf`	Clustering Of Gene Expression Data Based On Shape Similarity. BIOCOMP Travis J. Hestilow, James Perez, Yufei Huang
2007	J	`jnl`	Uncovering Gene Regulatory Networks from Time-Series Microarray Data with Variational Bayesian Structural Expectation Maximization. EURASIP J. Bioinform. Syst. Biol. Isabel M. Tienda-Luna, Yufei Huang, Yufang Yin, Diego Pablo Ruiz Padillo, Maria Carmen Carrion Perez
2006	A*	`conf`	Particle Filtering for Adaptive Sensor Fault Detection and Identification. ICRA Tao Wei, Yufei Huang, C. L. Philip Chen
2006	—	`conf`	Reverse Engineering Yeast Gene Regulatory Networks using Graphical Models. ICASSP (2) Jiayin Wang, Yufei Huang, Maribel Sanchez, Yufeng Wang, Jianqiu (Michelle) Zhang
2005	J	`jnl`	Adaptive Blind Multiuser Detection over Flat Fast Fading Channels Using Particle Filtering. EURASIP J. Wirel. Commun. Netw. Yufei Huang, Jianqiu (Michelle) Zhang, Isabel M. Tienda-Luna, Petar M. Djuric, Diego Pablo Ruiz Padillo
2005	J	`jnl`	Bayesian detection for BLAST. IEEE Trans. Signal Process. Yufei Huang, Jianqiu (Michelle) Zhang, Petar M. Djuric
2005	—	`conf`	Belief-directed sequential probabilistic data association multiuser detector. ICASSP (3) Yufei Huang, Yufang Yin, Jianqiu (Michelle) Zhang
2005	B	`conf`	Remaining engine life estimation for a sensor-based aircraft engine. SMC Ten-Huei Guo, Philip Chen, Yufei Huang
2005	—	`conf`	Sensor validation for flight control by particle filtering. EUSIPCO Tao Wei, Yufei Huang, Philip Chen
2005	—	`conf`	Symbol detection with time-varying unknown phase by expectation propagation. ICASSP (3) Tao Wei, Yufei Huang, Yuan (Alan) Qi
2004	J	`jnl`	A blind particle filtering detector of signals transmitted over flat fading channels. IEEE Trans. Signal Process. Yufei Huang, Petar M. Djuric
2004	B	`conf`	A generalized probabilistic data association multiuser detector. ISIT Yufei Huang, Jianqiu (Michelle) Zhang
2004	J	`jnl`	A hybrid importance function for particle filtering. IEEE Signal Process. Lett. Yufei Huang, Petar M. Djuric
2004	B	`conf`	Adaptive blind multiuser detection over flat fast fading channels using particle filtering. GLOBECOM Yufei Huang, Jianqiu (Michelle) Zhang, Isabel M. Tienda-Luna, Petar M. Djuric, Diego Pablo Ruiz Padillo
2004	—	`conf`	Joint symbol detection and timing estimation with stochastic M-algorithm. ICASSP (4) Yufang Yin, Yufei Huang, Jianqiu (Michelle) Zhang
2004	B	`conf`	Turbo equalization using probabilistic data association. GLOBECOM Yufang Yin, Yufei Huang, Jianqiu (Michelle) Zhang
2003	—	`conf`	Detection with particle filtering in BLAST systems. ICC Yufei Huang, Jianqiu Zhang, Petar M. Djuric
2003	B	`conf`	Joint velocity estimation and symbol detection in non-stationary fading channels by particle filtering. GLOBECOM Yufei Huang, Petar M. Djuric, Jianqiu (Michelle) Zhang
2003	—	`conf`	Lower bounds on the variance of deterministic signal parameter estimators using Bayesian inference. ICASSP (6) Yufei Huang, Jianqiu (Michelle) Zhang
2003	J	`jnl`	Particle filtering. IEEE Signal Process. Mag. Petar M. Djuric, Jayesh H. Kotecha, Jianqui Zhang, Yufei Huang, Tadesse Ghirmai, Mónica F. Bugallo, Joaquín Míguez
2002	—	`conf`	A blind particle filtering detector for joint channel estimation, tracking and data detection over flat fading channels. EUSIPCO Yufei Huang, Petar M. Djuric
2002	Misc	`conf`	A new importance function for particle filtering and its application to blind detection in flat fading channels. ICASSP Yufei Huang, Petar M. Djuric
2002	—	`conf`	Applications of particle filtering to communications: A review. EUSIPCO Petar M. Djuric, Jianqiu Zhang, Tadesse Ghirmai, Yufei Huang, Jayesh H. Kotecha
2002	J	`jnl`	Multiuser detection of synchronous code-division multiple-access signals by perfect sampling. IEEE Trans. Signal Process. Yufei Huang, Petar M. Djuric
2002	—	`conf`	Multiuser detection with particle filtering. EUSIPCO Jianqiu Zhang, Yufei Huang, Petar M. Djuric
2002	J	`jnl`	Perfect sampling: a review and applications to signal processing. IEEE Trans. Signal Process. Petar M. Djuric, Yufei Huang, Tadesse Ghirmai
2002	J	`jnl`	Variable Selection by Perfect Sampling. EURASIP J. Adv. Signal Process. Yufei Huang, Petar M. Djuric
2001	Misc	`conf`	Multiuser detection of synchronous CDMA signals by the Gibbs coupler. ICASSP Yufei Huang, Petar M. Djuric
2000	Misc	`conf`	Bayesian detection of transient signals in colored noise. ICASSP Yufei Huang, Petar M. Djuric
2000	—	`conf`	Choosing priors for an important class of signal processing problems. EUSIPCO Yufei Huang, Petar M. Djuric
2000	J	`jnl`	Estimation of a Bernoulli parameter p from imperfect trials. IEEE Signal Process. Lett. Petar M. Djuric, Yufei Huang