Yue Wang

50 papers B 1Misc 1Journal 26Unranked 20
YearRankTypeTitle / Venue / Authors
2025 J jnl
BioArc: Discovering Optimal Neural Architectures for Biological Foundation Models.
CoRR
Yi Fang, Haoran Xu, Jiaxin Han, Sirui Ding, Yizhi Wang, Yue Wang, Xuan Wang
2025 J jnl
Precision and Accuracy in Quantitative Measurement of Gene Expression from Single-cell/nucleus RNA Sequencing Data.
Genom. Proteom. Bioinform.
Rujia Dai, Ming Zhang, Tianyao Chu, Richard Kopp, Chunling Zhang, Kefu Liu, Yue Wang, Xusheng Wang, Chao Chen, Chunyu Liu
2025 J jnl
Prediction of gene regulatory connections with joint single-cell foundation models and graph-based learning.
Bioinform.
Sindhura Kommu, Yizhi Wang, Yue Wang, Xuan Wang
2024 J jnl
CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution.
Bioinform.
Chiung-Ting Wu, Dongping Du, Lulu Chen, Rujia Dai, Chunyu Liu, Guoqiang Yu, Saurabh Bhardwaj, Sarah J. Parker, Zhen Zhang, Robert Clarke, David M. Herrington, Yue Wang
2024 J jnl
DDN3.0: determining significant rewiring of biological network structure with differential dependency networks.
Bioinform.
Yi Fu, Yingzhou Lu, Yizhi Wang, Bai Zhang, Zhen Zhang, Guoqiang Yu, Chunyu Liu, Robert Clarke, David M. Herrington, Yue Wang
2023 J jnl
CT-based Radiogenomics Framework for COVID-19 Using ACE2 Imaging Representations.
J. Digit. Imaging
Tian Xia, Xiaohang Fu, Michael J. Fulham, Yue Wang, David Feng, Jinman Kim
2022 J jnl
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution.
Bioinform.
Lulu Chen, Chiung-Ting Wu, Chia-Hsiang Lin, Rujia Dai, Chunyu Liu, Robert Clarke, Guoqiang Yu, Jennifer E. Van Eyk, David M. Herrington, Yue Wang
2021 J jnl
Machine intelligence enabled radiomics.
Nat. Mach. Intell.
Yue Wang, David M. Herrington
2020 J jnl
SynQuant: an automatic tool to quantify synapses from microscopy images.
Bioinform.
Yizhi Wang, Congchao Wang, Petter Ranefall, Gerard Broussard, Yinxue Wang, Guilai Shi, Boyu Lyu, Chiung-Ting Wu, Yue Wang, Lin Tian, Guoqiang Yu
2020 J jnl
Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection.
Bioinform.
Chiung-Ting Wu, Yizhi Wang, Yinxue Wang, Timothy M. D. Ebbels, Ibrahim Karaman, Gonçalo Graça, Rui Pinto, David M. Herrington, Yue Wang, Guoqiang Yu
2020 J jnl
debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues.
Bioinform.
Lulu Chen, Chiung-Ting Wu, Niya Wang, David M. Herrington, Robert Clarke, Yue Wang
2019 J jnl
DBS: a fast and informative segmentation algorithm for DNA copy number analysis.
BMC Bioinform.
Jun Ruan, Zhen Liu, Ming Sun, Yue Wang, Junqiu Yue, Guoqiang Yu
2019 — conf
Segmenting Neuronal Structure in 3D Optical Microscope Images via Knowledge Distillation with Teacher-Student Network.
ISBI
Heng Wang, Donghao Zhang, Yang Song, Siqi Liu, Yue Wang, Dagan Feng, Hanchuan Peng, Weidong Cai
2018 J jnl
Detection of Sources in Non-Negative Blind Source Separation by Minimum Description Length Criterion.
IEEE Trans. Neural Networks Learn. Syst.
Chia-Hsiang Lin, Chong-Yung Chi, Lulu Chen, David J. Miller, Yue Wang
2018 J jnl
Maximum Volume Inscribed Ellipsoid: A New Simplex-Structured Matrix Factorization Framework via Facet Enumeration and Convex Optimization.
SIAM J. Imaging Sci.
Chia-Hsiang Lin, Ruiyuan Wu, Wing-Kin Ma, Chong-Yung Chi, Yue Wang
2018 J jnl
Multi-Pass Fast Watershed for Accurate Segmentation of Overlapping Cervical Cells.
IEEE Trans. Medical Imaging
Afaf Tareef, Yang Song, Heng Huang, Dagan Feng, Mei Chen, Yue Wang, Weidong Cai
2018 — conf
Nuclei instance segmentation with dual contour-enhanced adversarial network.
ISBI
Donghao Zhang, Yang Song, Siqi Liu, Dagan Feng, Yue Wang, Weidong Cai
2017 J jnl
Automated Functional Analysis of Astrocytes from Chronic Time-Lapse Calcium Imaging Data.
Frontiers Neuroinformatics
Yinxue Wang, Guilai Shi, David J. Miller, Yizhi Wang, Congchao Wang, Gerard Broussard, Yue Wang, Lin Tian, Guoqiang Yu
2017 J jnl
Automatic segmentation of overlapping cervical smear cells based on local distinctive features and guided shape deformation.
Neurocomputing
Afaf Tareef, Yang Song, Weidong Cai, Heng Huang, Hang Chang, Yue Wang, Michael J. Fulham, Dagan Feng, Mei Chen
2017 J jnl
Dual discriminative local coding for tissue aging analysis.
Medical Image Anal.
Yang Song, Qing Li, Fan Zhang, Heng Huang, Dagan Feng, Yue Wang, Mei Chen, Weidong Cai
2017 J jnl
Optimizing the cervix cytological examination based on deep learning and dynamic shape modeling.
Neurocomputing
Afaf Tareef, Yang Song, Heng Huang, Yue Wang, Dagan Feng, Mei Chen, Weidong Cai
2016 — conf
Automatic nuclei and cytoplasm segmentation of leukocytes with color and texture-based image enhancement.
ISBI
Afaf Tareef, Yang Song, Tom Weidong Cai, Yue Wang, David Dagan Feng, Mei Chen
2016 J jnl
Bioimage classification with subcategory discriminant transform of high dimensional visual descriptors.
BMC Bioinform.
Yang Song, Weidong Cai, Heng Huang, Dagan Feng, Yue Wang, Mei Chen
2016 J jnl
Convex-Optimization-Based Compartmental Pharmacokinetic Analysis for Prostate Tumor Characterization Using DCE-MRI.
IEEE Trans. Biomed. Eng.
Arul-Murugan Ambikapathi, Tsung-Han Chan, Chia-Hsiang Lin, Fei-Shih Yang, Chong-Yung Chi, Yue Wang
2016 — conf
FASP: A machine learning approach to functional astrocyte phenotyping from time-lapse calcium imaging data.
ISBI
Yinxue Wang, Guilai Shi, David J. Miller, Yizhi Wang, Gerard Broussard, Yue Wang, Lin Tian, Guoqiang Yu
2016 — conf
Graphical Time Warping for Joint Alignment of Multiple Curves.
NIPS
Yizhi Wang, David J. Miller, Kira Poskanzer, Yue Wang, Lin Tian, Guoqiang Yu
2016 — conf
Texture analysis of tissue aging using global and cluster constrained local coding.
ISBI
Yang Song, Weidong Cai, Fan Zhang, Heng Huang, David Dagan Feng, Yue Wang, Mei Chen
2015 J jnl
Large Margin Local Estimate With Applications to Medical Image Classification.
IEEE Trans. Medical Imaging
Yang Song, Tom Weidong Cai, Heng Huang, Yun Zhou, David Dagan Feng, Yue Wang, Michael J. Fulham, Mei Chen
2015 — conf
Learning Shape-Driven Segmentation Based on Neural Network and Sparse Reconstruction Toward Automated Cell Analysis of Cervical Smears.
ICONIP (1)
Afaf Tareef, Yang Song, Weidong Cai, Heng Huang, Yue Wang, Dagan Feng, Mei Chen
2015 J jnl
Locality-constrained Subcluster Representation Ensemble for lung image classification.
Medical Image Anal.
Yang Song, Tom Weidong Cai, Heng Huang, Yun Zhou, Yue Wang, David Dagan Feng
2014 J jnl
A feasible roadmap for developing volumetric probability atlas of localized prostate cancer.
CoRR
Liang Zhao, Jianhua Xuan, Yue Wang
2014 — conf
A feasible roadmap to identifying significant intercellular genomic heterogeneity in deep sequencing data.
GlobalSIP
Guoqiang Yu, Niya Wang, Roger R. Wang, Sean S. Wang, Yue Wang
2014 — conf
A statistical approach to identifying significant transgenerational methylation changes.
GlobalSIP
Ye Tian, Bai Zhang, Yi Fu, Guoqiang Yu, Yue Wang
2014 — conf
Enhancing the convex analysis of mixtures technique for estimating DCE-MRI pharmacokinetic parameters.
EMBC
Ibrahim Mohamed Ibrahim, Guoqiang Yu, Li Chen, Yue Wang
2014 — conf
Predicting age at loss of ambulation in Duchenne muscular dystrophy with deep phenotypic measures.
GlobalSIP
Yinxue Wang, Luca Bello, Yue Wang, Craig M. McDonald, Eric P. Hoffman, Guoqiang Yu
2013 J jnl
Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling.
BMC Bioinform.
Yang Song, Weidong Cai, Heng Huang, Yue Wang, David Dagan Feng, Mei Chen
2012 J jnl
An Overview of Population Genetic Data Simulation.
J. Comput. Biol.
Xiguo Yuan, David J. Miller, Junying Zhang, David M. Herrington, Yue Wang
2012 — conf
Context Enhanced Graphical Model for Object Localization in Medical Images.
MCV
Yang Song, Weidong Cai, Heng Huang, Yue Wang, David Dagan Feng
2012 Misc conf
Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer.
Pacific Symposium on Biocomputing
Li Chen, Jianhua Xuan, Jinghua Gu, Yue Wang, Zhen Zhang, Tian-Li Wang, Ie-Ming Shih
2012 — conf
Location classification of lung nodules with optimized graph construction.
ISBI
Yang Song, Weidong Cai, Yue Wang, David Dagan Feng
2012 — conf
Object localization in medical images based on graphical model with contrast and interest-region terms.
CVPR Workshops
Yang Song, Weidong Cai, Heng Huang, Yue Wang, David Dagan Feng
2011 — conf
GIST: A Gibbs sampler to identify intracellular signal transduction pathways.
EMBC
Jinghua Gu, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Yue Wang, Robert Clarke, Jianhua Xuan
2010 — ch.
Convex analysis for non-negative blind source separation with application in imaging.
Convex Optimization in Signal Processing and Communications
Wing-Kin Ma, Tsung-Han Chan, Chong-Yung Chi, Yue Wang
2008 B conf
Deformation estimation and analysis for adaptive radiation therapy.
Image Processing
Bin Wang, Jianhua Xuan, Qingrong Jackie Wu, Su Zhang, Yue Wang
2007 — conf
A Convex Analysis Based Criterion for Blind Separation of Non-Negative Sources.
ICASSP (3)
Tsung-Han Chan, Wing-Kin Ma, Chong-Yung Chi, Yue Wang
2006 — conf
Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence.
EMBC
Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Wang, Robert Clarke
2006 — conf
Latent Variable and nICA Modeling of Pathway Gene Module Composite.
EMBC
Ting Gong, Yitan Zhu, Jianhua Xuan, Huai Li, Robert Clarke, Eric P. Hoffman, Yue Wang
2006 — conf
Phenotypic-Specific Gene Module Discovery using a Diagnostic Tree and caBIGTM VISDA.
EMBC
Yitan Zhu, Zuyi Wang, Yuanjian Feng, Jianhua Xuan, David J. Miller, Eric P. Hoffman, Yue Wang
2005 — ch.
Gene Selection by Weighted Fisher criterion for Multiclass Prediction.
Advances in Bioinformatics and Its Applications
Jianhua Xuan, Yibin Dong, Javed I. Khan, Robert Clarke, Eric P. Hoffman, Yue Wang
1996 — conf
Image quality evaluation for radiation dose optimization in CR by shape and wavelet analyses.
EUSIPCO
Jianhua Xuan, Tiilay Adah, Eliot L. Siegel, Yue Wang