Yuanyuan Chen

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2024 J jnl
MMG4: Recognition of G4-Forming Sequences Based on Markov Model.
J. Comput. Biol.
Boyuan Yu, Hao Zhang, Cong Pian, Yuanyuan Chen
2023 J jnl
Improving the performance of single-cell RNA-seq data mining based on relative expression orderings.
Briefings Bioinform.
Yuanyuan Chen, Hao Zhang, Xiao Sun
2023 J jnl
NcPath: a novel platform for visualization and enrichment analysis of human non-coding RNA and KEGG signaling pathways.
Bioinform.
Zutan Li, Yuan Zhang, Jingya Fang, Zhihui Xu, Hao Zhang, Minfang Mao, Yuanyuan Chen, Liangyun Zhang, Cong Pian
2022 J jnl
Adapt-Kcr: a novel deep learning framework for accurate prediction of lysine crotonylation sites based on learning embedding features and attention architecture.
Briefings Bioinform.
Zutan Li, Jingya Fang, Shining Wang, Liangyun Zhang, Yuanyuan Chen, Cong Pian
2022 J jnl
MiRLoc: predicting miRNA subcellular localization by incorporating miRNA-mRNA interactions and mRNA subcellular localization.
Briefings Bioinform.
Mingmin Xu, Yuanyuan Chen, Zhihui Xu, Liangyun Zhang, Hangjin Jiang, Cong Pian
2022 J jnl
Predicting the structure of unexplored novel fentanyl analogues by deep learning model.
Briefings Bioinform.
Yuan Zhang, Qiaoyan Jiang, Ling Li, Zutan Li, Zhihui Xu, Yuanyuan Chen, Yang Sun, Cheng Liu, Zhengsheng Mao, Feng Chen, Hualan Li, Yue Cao, Cong Pian
2021 J jnl
Deep6mA: A deep learning framework for exploring similar patterns in DNA N6-methyladenine sites across different species.
PLoS Comput. Biol.
Zutan Li, Hangjin Jiang, Lingpeng Kong, Yuanyuan Chen, Kun Lang, Xiaodan Fan, Liangyun Zhang, Cong Pian
2021 J jnl
Mining influential genes based on deep learning.
BMC Bioinform.
Lingpeng Kong, Yuanyuan Chen, Fengjiao Xu, Mingmin Xu, Zutan Li, Jingya Fang, Liangyun Zhang, Cong Pian
2021 J jnl
Sample-specific perturbation of gene interactions identifies breast cancer subtypes.
Briefings Bioinform.
Yuanyuan Chen, Yu Gu, Zixi Hu, Xiao Sun
2020 J jnl
SOMM4mC: a second-order Markov model for DNA N4-methylcytosine site prediction in six species.
Bioinform.
Jiali Yang, Kun Lang, Guang-Le Zhang, Xiaodan Fan, Yuanyuan Chen, Cong Pian
2017 J jnl
V-ELMpiRNAPred: Identification of human piRNAs by the voting-based extreme learning machine (V-ELM) with a new hybrid feature.
J. Bioinform. Comput. Biol.
Cong Pian, Yuanyuan Chen, Jin Zhang, Zhi Chen, Guang-Le Zhang, Qiang Li, Tao Yang, Liang-Yun Zhang
2016 J jnl
OP-Triplet-ELM: Identification of real and pseudo microRNA precursors using extreme learning machine with optimal features.
J. Bioinform. Comput. Biol.
Cong Pian, Jin Zhang, Yuanyuan Chen, Zhi Chen, Qin Li, Qiang Li, Liang-Yun Zhang
2014 J jnl
Promoter recognition based on the maximum entropy hidden Markov model.
Comput. Biol. Medicine
Xiao-yu Zhao, Jin Zhang, Yuanyuan Chen, Qiang Li, Tao Yang, Cong Pian, Liang-Yun Zhang