Yuansong Zeng - RankMe

28 papers A 1Misc 1Journal 16Unranked 10

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Adapting a Pre-trained Single-Cell Foundation Model to Spatial Gene Expression Generation from Histology Images. CoRR Donghai Fang, Yongheng Li, Zhen Wang, Yuansong Zeng, Wenwen Min
2025	J	`jnl`	BalancedDiff: Balanced Diffusion Network for High-Quality Molecule Generation. J. Chem. Inf. Model. Yulong Wu, Jin Xie, Jing Nie, Bonan Ding, Yuansong Zeng, Jiale Cao
2025	—	`conf`	Cellular-Resolution Reconstruction of Spatial Transcriptomics from Histology Images via Foundation Models and KANs. BIBM Ruipeng Huang, Leiming Fang, Wenbing Li, Yuansong Zeng, Yuedong Yang
2025	J	`jnl`	DANet: spatial gene expression prediction from H&E histology images through dynamic alignment. Briefings Bioinform. Yulong Wu, Jin Xie, Jing Nie, Jiale Cao, Yuansong Zeng, Zheng Wang
2025	—	`conf`	Drug Sensitivity Inference Through Foundation Model-Driven Contrastive Integration of Bulk and Single-Cell Omics. BIBM Ningyuan Shangguan, Yuansong Zeng, Wenbing Li, Yuedong Yang
2025	J	`jnl`	Foundation Model: A New Era for Plant Single-cell Genomics. Genom. Proteom. Bioinform. Yuansong Zeng, Yuedong Yang
2025	J	`jnl`	Integrating single-cell multi-omics data through self-supervised clustering. Appl. Soft Comput. Yuansong Zeng, Jianing Chen, Zixiang Pan, Weijiang Yu, Yuedong Yang
2025	J	`jnl`	MoRA: On-the-fly Molecule-aware Low-Rank Adaptation Framework for LLM-based Multi-Modal Molecular Assistant. CoRR Tao Yin, Xiaohong Zhang, Jiacheng Zhang, Li Huang, Zhibin Zhang, Yuansong Zeng, Jin Xie, Meng Yan
2025	J	`jnl`	SciDA: Scientific Dynamic Assessor of LLMs. CoRR Junting Zhou, Tingjia Miao, Yiyan Liao, Qichao Wang, Zhoufutu Wen, Yanqin Wang, Yunjie Huang, Ge Yan, Leqi Wang, Yucheng Xia, Hongwan Gao, Yuansong Zeng, Renjie Zheng, Chen Dun, Yitao Liang, Tong Yang, Wenhao Huang, Ge Zhang
2024	—	`conf`	Accurately Deciphering Novel Cell Type in Spatially Resolved Single-Cell Data Through Optimal Transport. ISBRA (2) Mai Luo, Yuansong Zeng, Jianing Chen, Ningyuan Shangguan, Wenhao Zhou, Yuedong Yang
2024	J	`jnl`	Deciphering cell types by integrating scATAC-seq data with genome sequences. Nat. Comput. Sci. Yuansong Zeng, Mai Luo, Ningyuan Shangguan, Peiyu Shi, Junxi Feng, Jin Xu, Ken Chen, Yutong Lu, Weijiang Yu, Yuedong Yang
2024	J	`jnl`	Detecting novel cell type in single-cell chromatin accessibility data via open-set domain adaptation. Briefings Bioinform. Yuefan Lin, Zixiang Pan, Yuansong Zeng, Yuedong Yang, Zhiming Dai
2024	—	`conf`	Dual Interaction and Kernel-Diverse Network for Accurate Drug-Target Binding Affinity Prediction. BIBM Yulong Wu, Jin Xie, Jing Nie, Jian Hu, Yuansong Zeng
2024	—	`conf`	Graph learning of disentangled representation for accurately aligning multiple spatial slices. BCB Jianing Chen, Yuansong Zeng, Ningyuan Shangguan, Wenhao Zhou, Wenbing Li, Yuedong Yang
2024	—	`conf`	Mamba-DTA: Drug-Target Binding Affinity Prediction with State Space Model. BIBM Yulong Wu, Jin Xie, Jing Nie, Xiaohong Zhang, Yuansong Zeng
2023	J	`jnl`	Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model. Bioinform. Yuansong Zeng, Zhuoyi Wei, Qianmu Yuan, Sheng Chen, Weijiang Yu, Yutong Lu, Jianzhao Gao, Yuedong Yang
2023	J	`jnl`	Identifying spatial domain by adapting transcriptomics with histology through contrastive learning. Briefings Bioinform. Yuansong Zeng, Rui Yin, Mai Luo, Jianing Chen, Zixiang Pan, Yutong Lu, Weijiang Yu, Yuedong Yang
2022	—	`conf`	A Meta-learning based Graph-Hierarchical Clustering Method for Single Cell RNA-Seq Data. BIBM Zixiang Pan, Yuansong Zeng, Yuefan Lin, Weijiang Yu, Haokun Zhang, Yuedong Yang
2022	J	`jnl`	A parameter-free deep embedded clustering method for single-cell RNA-seq data. Briefings Bioinform. Yuansong Zeng, Zhuoyi Wei, Fengqi Zhong, Zixiang Pan, Yutong Lu, Yuedong Yang
2022	J	`jnl`	A robust and scalable graph neural network for accurate single-cell classification. Briefings Bioinform. Yuansong Zeng, Zhuoyi Wei, Zixiang Pan, Yutong Lu, Yuedong Yang
2022	—	`conf`	SCdenoise: a reference-based scRNA-seq denoising method using semi-supervised learning. BIBM Fengqi Zhong, Yuansong Zeng, Yubao Liu, Yuedong Yang
2022	J	`jnl`	Spatial transcriptomics prediction from histology jointly through Transformer and graph neural networks. Briefings Bioinform. Yuansong Zeng, Zhuoyi Wei, Weijiang Yu, Rui Yin, Yuchen Yuan, Bingling Li, Zhonghui Tang, Yutong Lu, Yuedong Yang
2021	J	`jnl`	scAdapt: virtual adversarial domain adaptation network for single cell RNA-seq data classification across platforms and species. Briefings Bioinform. Xiang Zhou, Hua Chai, Yuansong Zeng, Huiying Zhao, Yuedong Yang
2020	—	`conf`	Accurately Clustering Single-cell RNA-seq data by Capturing Structural Relations between Cells through Graph Convolutional Network. BIBM Yuansong Zeng, Xiang Zhou, Jiahua Rao, Yutong Lu, Yuedong Yang
2019	J	`jnl`	A Cylindrical Lens Antenna With Extremely Flat Beams. IEEE Access Zhe Zhang, Shiwen Yang, Yuansong Zeng, Shiwei Qu, Yikai Chen
2018	—	`conf`	An Efficient File System for Hybrid In-Memory NVM and Block Devices. NVMSA Yuansong Zeng, Edwin Hsing-Mean Sha, Qingfeng Zhuge, Xianzhang Chen, Zhulin Ma, Lin Wu
2018	A	`conf`	Efficient wear leveling for inodes of file systems on persistent memories. DATE Xianzhang Chen, Edwin Hsing-Mean Sha, Yuansong Zeng, Chaoshu Yang, Weiwen Jiang, Qingfeng Zhuge
2016	Misc	`conf`	The design of an efficient swap mechanism for hybrid DRAM-NVM systems. EMSOFT Xianzhang Chen, Edwin Hsing-Mean Sha, Weiwen Jiang, Qingfeng Zhuge, Junxi Chen, Jiejie Qin, Yuansong Zeng