Yuanfang Ren

45 papers B 1Journal 37Unranked 7
YearRankTypeTitle / Venue / Authors
2026 J jnl
Federated Learning with Multi-Partner OneFlorida+ Consortium Data for Predicting Major Postoperative Complications.
CoRR
Yuanfang Ren, Varun Sai Vemuri, Zhenhong Hu, Benjamin Shickel, Ziyuan Guan, Tyler J. Loftus, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2025 J jnl
Learning optimal treatment strategies for intraoperative hypotension using deep reinforcement learning.
CoRR
Esra Adiyeke, Tianqi Liu, Venkata Sai Dheeraj Naganaboina, Han Li, Tyler J. Loftus, Yuanfang Ren, Benjamin Shickel, Matthew M. Ruppert, Karandeep Singh, Ruogu Fang, Parisa Rashidi, Azra Bihorac, Tezcan Ozrazgat-Baslanti
2025 J jnl
MANDARIN: Mixture-of-Experts Framework for Dynamic Delirium and Coma Prediction in ICU Patients: Development and Validation of an Acute Brain Dysfunction Prediction Model.
CoRR
Miguel Contreras, Jessica Sena, Andrea Davidson, Jiaqing Zhang, Tezcan Ozrazgat-Baslanti, Yuanfang Ren, Ziyuan Guan, Jeremy A. Balch, Tyler J. Loftus, Subhash Nerella, Azra Bihorac, Parisa Rashidi
2025 — conf
MELON: Multimodal Mixture-of-Experts with Spectral-Temporal Fusion for Long-Term MObility EstimatioN in Critical Care.
MICCAI (15)
Jiaqing Zhang, Miguel Contreras, Jessica Sena, Andrea Davidson, Yuanfang Ren, Ziyuan Guan, Tezcan Ozrazgat-Baslanti, Tyler J. Loftus, Subhash Nerella, Azra Bihorac, Parisa Rashidi
2025 J jnl
MELON: Multimodal Mixture-of-Experts with Spectral-Temporal Fusion for Long-Term Mobility Estimation in Critical Care.
CoRR
Jiaqing Zhang, Miguel Contreras, Jessica Sena, Andrea Davidson, Yuanfang Ren, Ziyuan Guan, Tezcan Ozrazgat-Baslanti, Tyler J. Loftus, Subhash Nerella, Azra Bihorac, Parisa Rashidi
2025 J jnl
Quantifying Circadian Desynchrony in ICU Patients and Its Association with Delirium.
CoRR
Yuanfang Ren, Andrea Davidson, Jiaqing Zhang, Miguel Contreras, Ayush Patela, Michelle Gumz, Tezcan Ozrazgat-Baslanti, Parisa Rashidi, Azra Bihorac
2025 J jnl
Unlocking Health Insights with SDoH Data: A Comprehensive Open-Access Database and SDoH-EHR Linkage Tool.
CoRR
Zhenhong Hu, Esra Adiyeke, Ziyuan Guan, Divya Vellanki, Jiahang Yu, Ruilin Zhu, Yuanfang Ren, Yingbo Ma, Annanya Sai Vedala, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2025 J jnl
Validation of the MySurgeryRisk Algorithm for Predicting Complications and Death after Major Surgery: A Retrospective Multicenter Study Using OneFlorida Data Trust.
CoRR
Yuanfang Ren, Esra Adiyeke, Ziyuan Guan, Zhenhong Hu, Mackenzie J. Meni, Benjamin Shickel, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2024 J jnl
A multi-cohort study on prediction of acute brain dysfunction states using selective state space models.
CoRR
Brandon Silva, Miguel Contreras, Sabyasachi Bandyopadhyay, Yuanfang Ren, Ziyuan Guan, Jeremy A. Balch, Kia Khezeli, Tezcan Ozrazgat-Baslanti, Benjamin Shickel, Azra Bihorac, Parisa Rashidi
2024 J jnl
Acute kidney injury prediction for non-critical care patients: a retrospective external and internal validation study.
CoRR
Esra Adiyeke, Yuanfang Ren, Benjamin Shickel, Matthew M. Ruppert, Ziyuan Guan, Sandra L. Kane-Gill, Raghavan Murugan, Nabihah Amatullah, Britney A. Stottlemyer, Tiffany L. Tran, Dan Ricketts, Christopher M. Horvat, Parisa Rashidi, Azra Bihorac, Tezcan Ozrazgat-Baslanti
2024 J jnl
DeLLiriuM: A large language model for delirium prediction in the ICU using structured EHR.
CoRR
Miguel Contreras, Sumit Kapoor, Jiaqing Zhang, Andrea Davidson, Yuanfang Ren, Ziyuan Guan, Tezcan Ozrazgat-Baslanti, Subhash Nerella, Azra Bihorac, Parisa Rashidi
2024 J jnl
Federated learning model for predicting major postoperative complications.
CoRR
Yonggi Park, Yuanfang Ren, Benjamin Shickel, Ziyuan Guan, Ayush Patela, Yingbo Ma, Zhenhong Hu, Tyler J. Loftus, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2024 J jnl
Global Contrastive Training for Multimodal Electronic Health Records with Language Supervision.
CoRR
Yingbo Ma, Suraj Kolla, Zhenhong Hu, Dhruv Kaliraman, Victoria Nolan, Ziyuan Guan, Yuanfang Ren, Brooke Armfield, Tezcan Ozrazgat-Baslanti, Jeremy A. Balch, Tyler J. Loftus, Parisa Rashidi, Azra Bihorac, Benjamin Shickel
2024 J jnl
MANGO: Multimodal Acuity traNsformer for intelliGent ICU Outcomes.
CoRR
Jiaqing Zhang, Miguel Contreras, Sabyasachi Bandyopadhyay, Andrea Davidson, Jessica Sena, Yuanfang Ren, Ziyuan Guan, Tezcan Ozrazgat-Baslanti, Tyler J. Loftus, Subhash Nerella, Azra Bihorac, Parisa Rashidi
2024 J jnl
Promoting AI Competencies for Medical Students: A Scoping Review on Frameworks, Programs, and Tools.
CoRR
Yingbo Ma, Yukyeong Song, Jeremy A. Balch, Yuanfang Ren, Divya Vellanki, Zhenhong Hu, Meghan Brennan, Suraj Kolla, Ziyuan Guan, Brooke Armfield, Tezcan Ozrazgat-Baslanti, Parisa Rashidi, Tyler J. Loftus, Azra Bihorac, Benjamin Shickel
2024 J jnl
Temporal Cross-Attention for Dynamic Embedding and Tokenization of Multimodal Electronic Health Records.
CoRR
Yingbo Ma, Suraj Kolla, Dhruv Kaliraman, Victoria Nolan, Zhenhong Hu, Ziyuan Guan, Yuanfang Ren, Brooke Armfield, Tezcan Ozrazgat-Baslanti, Tyler J. Loftus, Parisa Rashidi, Azra Bihorac, Benjamin Shickel
2024 J jnl
Transparent AI: Developing an Explainable Interface for Predicting Postoperative Complications.
CoRR
Yuanfang Ren, Chirayu Tripathi, Ziyuan Guan, Ruilin Zhu, Victoria Hougha, Yingbo Ma, Zhenhong Hu, Jeremy A. Balch, Tyler J. Loftus, Parisa Rashidi, Benjamin Shickel, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2023 J jnl
APRICOT: Acuity Prediction in Intensive Care Unit (ICU): Predicting Stability, Transitions, and Life-Sustaining Therapies.
CoRR
Miguel Contreras, Brandon Silva, Benjamin Shickel, Tezcan Ozrazgat-Baslanti, Yuanfang Ren, Ziyuan Guan, Sabyasachi Bandyopadhyay, Kia Khezeli, Azra Bihorac, Parisa Rashidi
2023 J jnl
Clinical Courses of Acute Kidney Injury in Hospitalized Patients: A Multistate Analysis.
CoRR
Esra Adiyeke, Yuanfang Ren, Ziyuan Guan, Matthew M. Ruppert, Parisa Rashidi, Azra Bihorac, Tezcan Ozrazgat-Baslanti
2023 J jnl
Computable Phenotypes to Characterize Changing Patient Brain Dysfunction in the Intensive Care Unit.
CoRR
Yuanfang Ren, Tyler J. Loftus, Ziyuan Guan, Rayon Uddin, Benjamin Shickel, Carolina B. Maciel, Katharina Busl, Parisa Rashidi, Azra Bihorac, Tezcan Ozrazgat-Baslanti
2023 J jnl
Detecting Visual Cues in the Intensive Care Unit and Association with Patient Clinical Status.
CoRR
Subhash Nerella, Ziyuan Guan, Andrea Davidson, Yuanfang Ren, Tezcan Baslanti, Brooke Armfield, Patrick James Tighe, Azra Bihorac, Parisa Rashidi
2023 — conf
Dynamic Delirium Prediction in the Intensive Care Unit using Machine Learning on Electronic Health Records.
BHI
Miguel Contreras, Brandon Silva, Benjamin Shickel, Sabyasachi Bandyopadhyay, Ziyuan Guan, Yuanfang Ren, Tezcan Ozrazgat-Baslanti, Kia Khezeli, Azra Bihorac, Parisa Rashidi
2023 J jnl
Identifying acute illness phenotypes via deep temporal interpolation and clustering network on physiologic signatures.
CoRR
Yuanfang Ren, Yanjun Li, Tyler J. Loftus, Jeremy A. Balch, Kenneth L. Abbott, Shounak Datta, Matthew M. Ruppert, Ziyuan Guan, Benjamin Shickel, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2023 J jnl
The Potential of Wearable Sensors for Assessing Patient Acuity in Intensive Care Unit (ICU).
CoRR
Jessica Sena, Mohammad Tahsin Mostafiz, Jiaqing Zhang, Andrea Davidson, Sabyasachi Bandyopadhyay, Yuanfang Ren, Tezcan Ozrazgat-Baslanti, Benjamin Shickel, Tyler J. Loftus, William Robson Schwartz, Azra Bihorac, Parisa Rashidi
2023 J jnl
Transformer Models for Acute Brain Dysfunction Prediction.
CoRR
Brandon Silva, Miguel Contreras, Tezcan Ozrazgat-Baslanti, Yuanfang Ren, Ziyuan Guan, Kia Khezeli, Azra Bihorac, Parisa Rashidi
2022 — conf
Identification of co-existing embeddings of a motif in multilayer networks.
BCB
Yuanfang Ren, Aisharjya Sarkar, Aysegul Bumin, Kejun Huang, Pierangelo Veltri, Alin Dobra, Tamer Kahveci
2022 J jnl
Multi-dimensional patient acuity estimation with longitudinal EHR tokenization and flexible transformer networks.
Frontiers Digit. Health
Benjamin Shickel, Brandon Silva, Tezcan Ozrazgat-Baslanti, Yuanfang Ren, Kia Khezeli, Ziyuan Guan, Patrick James Tighe, Azra Bihorac, Parisa Rashidi
2022 J jnl
Pattern Discovery in Multilayer Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yuanfang Ren, Aisharjya Sarkar, Pierangelo Veltri, Ahmet Ay, Alin Dobra, Tamer Kahveci
2022 J jnl
Phenotype clustering in health care: A narrative review for clinicians.
Frontiers Artif. Intell.
Tyler J. Loftus, Benjamin Shickel, Jeremy A. Balch, Patrick James Tighe, Kenneth L. Abbott, Brian Fazzone, Erik M. Anderson, Jared Rozowsky, Tezcan Ozrazgat-Baslanti, Yuanfang Ren, Scott A. Berceli, William R. Hogan, Philip A. Efron, J. Randall Moorman, Parisa Rashidi, Gilbert R. Upchurch Jr., Azra Bihorac
2020 J jnl
Application of Deep Interpolation Network for Clustering of Physiologic Time Series.
CoRR
Yanjun Li, Yuanfang Ren, Tyler J. Loftus, Shounak Datta, Matthew Ruppert, Ziyuan Guan, Dapeng Oliver Wu, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2020 J jnl
Development of Computable Phenotype to Identify and Characterize Transitions in Acuity Status in Intensive Care Unit.
CoRR
Yuanfang Ren, Tyler J. Loftus, Rahul Sai Kasula, Prudhvee Narasimha Sadha, Parisa Rashidi, Azra Bihorac, Tezcan Ozrazgat-Baslanti
2019 J jnl
A New Algorithm for Counting Independent Motifs in Probabilistic Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Aisharjya Sarkar, Yuanfang Ren, Rasha Elhesha, Tamer Kahveci
2019 J jnl
Added Value of Intraoperative Data for Predicting Postoperative Complications: Development and Validation of a MySurgeryRisk Extension.
CoRR
Shounak Datta, Tyler J. Loftus, Matthew M. Ruppert, Chris Giordano, Lasith Adhikari, Ying-Chih Peng, Yuanfang Ren, Benjamin Shickel, Zheng Feng, Gloria Lipori, Gilbert R. Upchurch Jr., Xiaolin Li, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2019 J jnl
Characterizing building blocks of resource constrained biological networks.
BMC Bioinform.
Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci
2019 — conf
Finding Conserved Patterns in Multilayer Networks.
BCB
Yuanfang Ren, Aisharjya Sarkar, Ahmet Ay, Alin Dobra, Tamer Kahveci
2018 — conf
Characterizing Building Blocks of Resource Constrained Biological Networks.
BCB
Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci
2018 J jnl
Identification of jointly correlated gene sets.
J. Bioinform. Comput. Biol.
Yuanfang Ren, Ahmet Ay, Travis A. Gerke, Tamer Kahveci
2018 J jnl
ProMotE: an efficient algorithm for counting independent motifs in uncertain network topologies.
BMC Bioinform.
Yuanfang Ren, Aisharjya Sarkar, Tamer Kahveci
2018 J jnl
Shortest path counting in probabilistic biological networks.
BMC Bioinform.
Yuanfang Ren, Ahmet Ay, Tamer Kahveci
2016 — conf
Counting independent motifs in probabilistic networks.
BCB
Aisharjya Sarkar, Yuanfang Ren, Rasha Elhesha, Tamer Kahveci
2016 J jnl
Identifying the topology of signaling networks from partial RNAi data.
BMC Syst. Biol.
Yuanfang Ren, Qiyao Wang, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci
2015 — conf
Construction of signaling networks with incomplete RNAi data.
BIBM
Qiyao Wang, Yuanfang Ren, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci
2014 J jnl
A co-training algorithm for EEG classification with biomimetic pattern recognition and sparse representation.
Neurocomputing
Yuanfang Ren, Yan Wu, Yanbin Ge
2014 B conf
Convolutional deep belief networks for feature extraction of EEG signal.
IJCNN
Yuanfang Ren, Yan Wu
2013 J jnl
An efficient algorithm for high-dimensional function optimization.
Soft Comput.
Yuanfang Ren, Yan Wu