Yu Zhang

18 papers B 2C 1Misc 2Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation.
BMC Bioinform.
Guanjue Xiang, Belinda Giardine, Lin An, Chen Sun, Cheryl A. Keller, Elisabeth F. Heuston, Stacie M. Anderson, Martha Kirby, David M. Bodine, Yu Zhang, Ross C. Hardison
2021 J jnl
S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types.
Bioinform.
Guanjue Xiang, Belinda Giardine, Shaun Mahony, Yu Zhang, Ross C. Hardison
2020 J jnl
The changing mouse embryo transcriptome at whole tissue and single-cell resolution.
Nat.
Peng He, Brian A. Williams, Diane Trout, Georgi K. Marinov, Henry Amrhein, Libera Berghella, Say-Tar Goh, Ingrid Plajzer-Frick, Veena Afzal, Len A. Pennacchio, Diane E. Dickel, Axel Visel, Bing Ren, Ross C. Hardison, Yu Zhang, Barbara J. Wold
2019 C conf
Systems Biology in Heterogenous Tissues: Integrating Multiple *Omics Datasets to Understand Hematopoietic Differentiation.
BIBE
Jens Lichtenberg, Guanjue Xiang, Elisabeth F. Heuston, Belinda Giardine, Cheryl A. Keller, Ross C. Hardison, David M. Bodine, Yu Zhang
2014 J jnl
MRHMMs: Multivariate Regression Hidden Markov Models and the variantS.
Bioinform.
Yeonok Lee, Debashis Ghosh, Ross C. Hardison, Yu Zhang
2010 J jnl
A varying threshold method for ChIP peak-calling using multiple sources of information.
Bioinform.
Kuan-Bei Chen, Yu Zhang
2010 J jnl
An Effective Method for Detecting Gene Conversion Events in Whole Genomes.
J. Comput. Biol.
Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Eric D. Green, Webb Miller
2010 J jnl
Calling SNPs without a reference sequence.
BMC Bioinform.
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan C. Schuster, Webb Miller
2010 Misc conf
Optimization Methods for Selecting Founder Populations for Captive Breeding of Endangered Species.
Pacific Symposium on Biocomputing
Webb Miller, Stephen J. Wright, Yu Zhang, Stephan C. Schuster, Vanessa M. Hayes
2009 J jnl
Evolutionary History Reconstruction for Mammalian Complex Gene Clusters.
J. Comput. Biol.
Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller
2009 Misc conf
Simultaneous History Reconstruction for Complex Gene Clusters in Multiple Species.
Pacific Symposium on Biocomputing
Yu Zhang, Giltae Song, Chih-Hao Hsu, Webb Miller
2009 — conf
Whole-Genome Analysis of Gene Conversion Events.
RECOMB-CG
Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Webb Miller
2008 B conf
Reconstructing the Evolutionary History of Complex Human Gene Clusters.
RECOMB
Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller
2006 J jnl
Alignment of Optical Maps.
J. Comput. Biol.
Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman
2006 J jnl
Refinement of optical map assemblies.
Bioinform.
Anton Valouev, Yu Zhang, David C. Schwartz, Michael S. Waterman
2005 B conf
Alignment of Optical Maps.
RECOMB
Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman
2003 J jnl
An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences.
J. Comput. Biol.
Yu Zhang, Michael S. Waterman
2003 — conf
Eulerian Path Methods for Multiple Sequence Alignment.
CSB
Michael S. Waterman, Yu Zhang