Yu Xia

23 papers A 1C 1Misc 2Journal 16Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
SSRAAI: Learning Sequence and Structural Representations to Predict Antibody-Antigen Interactions.
IEEE Trans. Comput. Biol. Bioinform.
Bin Wang, Hongye Yang, Jiarui Liang, Songhui Rao, Ting Yan, Yuhui Liu, Xinyun Li, Jie Xiang, Huiqing Wang, Yu Xia, Ying Li
2023 C conf
SSCAE: A Neuromorphic SNN Autoencoder for sc-RNA-seq Dimensionality Reduction.
ISCAS
Tim Zhang, Amirali Amirsoleimani, Jason K. Eshraghian, Mostafa Rahimi Azghadi, Roman Genov, Yu Xia
2022 J jnl
Are transient protein-protein interactions more dispensable?
PLoS Comput. Biol.
Mohamed A. Ghadie, Yu Xia
2021 J jnl
Mutation Edgotype Drives Fitness Effect in Human.
Frontiers Bioinform.
Mohamed Ghadie, Yu Xia
2020 J jnl
A reference map of the human binary protein interactome.
Nat.
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
2019 J jnl
Convergent perturbation of the human domain-resolved interactome by viruses and mutations inducing similar disease phenotypes.
PLoS Comput. Biol.
Yangchun Frank Chen, Yu Xia
2017 J jnl
Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing.
PLoS Comput. Biol.
Mohamed A. Ghadie, Luke Lambourne, Marc Vidal, Yu Xia
2014 J jnl
Efficient Clustering with Limited Distance Information.
CoRR
Konstantin Voevodski, Maria-Florina Balcan, Heiko Röglin, Shang-Hua Teng, Yu Xia
2012 J jnl
Active Clustering of Biological Sequences.
J. Mach. Learn. Res.
Konstantin Voevodski, Maria-Florina Balcan, Heiko Röglin, Shang-Hua Teng, Yu Xia
2012 J jnl
Regulatory Network Structure as a Dominant Determinant of Transcription Factor Evolutionary Rate.
PLoS Comput. Biol.
Jasmin Coulombe-Huntington, Yu Xia
2012 Misc conf
Structural Models for Host-Pathogen Protein-Protein Interactions: Assessing Coverage and Bias.
Pacific Symposium on Biocomputing
Eric A. Franzosa, Yu Xia
2011 J jnl
Clustering Protein Sequences Given the Approximation Stability of the Min-Sum Objective Function
CoRR
Konstantin Voevodski, Maria-Florina Balcan, Heiko Röglin, Shang-Hua Teng, Yu Xia
2011 — conf
Min-sum Clustering of Protein Sequences with Limited Distance Information.
SIMBAD
Konstantin Voevodski, Maria-Florina Balcan, Heiko Röglin, Shang-Hua Teng, Yu Xia
2011 — ch.
Using Functional Linkage Gene Networks to Study Human Diseases.
Handbook of Research on Computational and Systems Biology
Bolan Linghu, Guohui Liu, Yu Xia
2010 J jnl
Discovering causal signaling pathways through gene-expression patterns.
Nucleic Acids Res.
Jignesh R. Parikh, Bertram Klinger, Yu Xia, Jarrod A. Marto, Nils Blüthgen
2010 J jnl
Efficient Clustering with Limited Distance Information
CoRR
Konstantin Voevodski, Maria-Florina Balcan, Heiko Röglin, Shang-Hua Teng, Yu Xia
2010 A conf
Efficient Clustering with Limited Distance Information.
UAI
Konstantin Voevodski, Maria-Florina Balcan, Heiko Röglin, Shang-Hua Teng, Yu Xia
2009 J jnl
Finding local communities in protein networks.
BMC Bioinform.
Konstantin Voevodski, Shang-Hua Teng, Yu Xia
2009 J jnl
Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate.
PLoS Comput. Biol.
Yu Xia, Eric A. Franzosa, Mark B. Gerstein
2009 J jnl
Spectral affinity in protein networks.
BMC Syst. Biol.
Konstantin Voevodski, Shang-Hua Teng, Yu Xia
2008 J jnl
High-precision high-coverage functional inference from integrated data sources.
BMC Bioinform.
Bolan Linghu, Evan S. Snitkin, Dustin T. Holloway, Adam M. Gustafson, Yu Xia, Charles DeLisi
2005 — ch.
Protein Interaction Prediction by Integrating Genomic Features and Protein Interaction Network Analysis.
Data Analysis and Visualization in Genomics and Proteomics
Long J. Lu, Yu Xia, Haiyuan Yu, Alexander Rives, Haoxin Lu, Falk Schubert, Mark Gerstein
1999 Misc conf
A Combined Approach for Ab Initio Construction of Low Resolution Protein Tertiary Structures from Sequence.
Pacific Symposium on Biocomputing
Ram Samudrala, Yu Xia, M. Levitt, Enoch S. Huang