Yu-Dong Cai

31 papers Journal 30Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
PLysPTM-HGNN: predicting lysine PTM sites of proteins using hybrid graph neural networks.
BMC Bioinform.
Lei Chen, Jing Yang, Bo Zhou, Yu-Dong Cai
2024 J jnl
CMAGN: circRNA-miRNA association prediction based on graph attention auto-encoder and network consistency projection.
BMC Bioinform.
Anhui Yin, Lei Chen, Bo Zhou, Yu-Dong Cai
2024 J jnl
Identification of key gene expression associated with quality of life after recovery from COVID-19.
Medical Biol. Eng. Comput.
Jingxin Ren, Qian Gao, Xianchao Zhou, Lei Chen, Wei Guo, Kaiyan Feng, Tao Huang, Yu-Dong Cai
2024 J jnl
Identification of key genes associated with persistent immune changes and secondary immune activation responses induced by influenza vaccination after COVID-19 recovery by machine learning methods.
Comput. Biol. Medicine
Jingxin Ren, Xianchao Zhou, Ke Huang, Lei Chen, Wei Guo, Kaiyan Feng, Tao Huang, Yu-Dong Cai
2024 J jnl
Identifying allergic-rhinitis-associated genes with random-walk-based method in PPI network.
Comput. Biol. Medicine
Lin Li, Feiming Huang, Yu-Hang Zhang, Yu-Dong Cai
2022 J jnl
Identifying Protein Subcellular Locations With Embeddings-Based node2loc.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaoyong Pan, Lei Chen, Min Liu, Zhibin Niu, Tao Huang, Yu-Dong Cai
2020 J jnl
Disease Cluster Detection and Functional Characterization.
IEEE Access
Wei Guo, Tao Zeng, Tao Huang, Yu-Dong Cai
2020 J jnl
Screening Dys-Methylation Genes and Rules for Cancer Diagnosis by Using the Pan-Cancer Study.
IEEE Access
Yu-Hang Zhang, Tao Zeng, Xiaoyong Pan, Wei Guo, Zijun Gan, Yunhua Zhang, Tao Huang, Yu-Dong Cai
2019 J jnl
Identifying Essential Signature Genes and Expression Rules Associated With Distinctive Development Stages of Early Embryonic Cells.
IEEE Access
Lei Chen, Xiaoyong Pan, Tao Zeng, Yu-Hang Zhang, Tao Huang, Yu-Dong Cai
2017 J jnl
Analysis of cancer-related lncRNAs using gene ontology and KEGG pathways.
Artif. Intell. Medicine
Lei Chen, Yu-Hang Zhang, Guohui Lu, Tao Huang, Yu-Dong Cai
2017 J jnl
Identify Key Sequence Features to Improve CRISPR sgRNA Efficacy.
IEEE Access
Lei Chen, Shaopeng Wang, Yu-Hang Zhang, Jiarui Li, Zhi-Hao Xing, Jialiang Yang, Tao Huang, Yu-Dong Cai
2016 J jnl
Prediction of protein N-formylation and comparison with N-acetylation based on a feature selection method.
Neurocomputing
You Zhou, Tao Huang, Guohua Huang, Ning Zhang, Xiangyin Kong, Yu-Dong Cai
2015 J jnl
Identifying New Candidate Genes and Chemicals Related to Prostate Cancer Using a Hybrid Network and Shortest Path Approach.
Comput. Math. Methods Medicine
Fei Yuan, You Zhou, Meng Wang, Jing Yang, Kai Wu, Changhong Lu, Xiangyin Kong, Yu-Dong Cai
2015 J jnl
Identifying Novel Candidate Genes Related to Apoptosis from a Protein-Protein Interaction Network.
Comput. Math. Methods Medicine
Baoman Wang, Fei Yuan, Xiangyin Kong, Lan-Dian Hu, Yu-Dong Cai
2011 J jnl
Predicting triplet of transcription factor - mediating enzyme - target gene by functional profiles.
Neurocomputing
Tao Huang, Lei Chen, Xiao-Jun Liu, Yu-Dong Cai
2010 J jnl
Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition.
BMC Bioinform.
Lei Chen, Kai-Yan Feng, Yu-Dong Cai, Kuo-Chen Chou, Hai-Peng Li
2009 J jnl
HIV-1 protease cleavage site prediction based on amino acid property.
J. Comput. Chem.
Bing Niu, Lin Lu, Liang Liu, Tian Hong Gu, Kai-Yan Feng, Wen-Cong Lu, Yu-Dong Cai
2008 — conf
Predicting Protein-Protein Interactions with Pseudo Amino Acid Composition.
BMEI (1)
Yu-Dong Cai, Guo-Ping Zhou
2007 J jnl
An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization.
Bioinform.
Ziliang Qian, Lingyi Lu, Xiao-Jun Liu, Yu-Dong Cai, Yixue Li
2007 J jnl
ECS: An automatic enzyme classifier based on functional domain composition.
Comput. Biol. Chem.
Lingyi Lu, Ziliang Qian, Yu-Dong Cai, Yixue Li
2006 J jnl
Operon prediction based on SVM.
Comput. Biol. Chem.
Guoqing Zhang, Zhi-Wei Cao, Qingming Luo, Yu-Dong Cai, Yixue Li
2005 J jnl
Predicting protein localization in budding Yeast.
Bioinform.
Kuo-Chen Chou, Yu-Dong Cai
2005 J jnl
Prediction of Membrane Protein Types by Incorporating Amphipathic Effects.
J. Chem. Inf. Model.
Kuo-Chen Chou, Yu-Dong Cai
2004 J jnl
Predicting subcellular localization of proteins in a hybridization space.
Bioinform.
Yu-Dong Cai, Kuo-Chen Chou
2004 J jnl
Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition.
Bioinform.
Yu-Dong Cai, Andrew J. Doig
2003 J jnl
Prediction of protein secondary structure content by artificial neural network.
J. Comput. Chem.
Yu-Dong Cai, Xiao-Jun Liu, Kuo-Chen Chou
2002 J jnl
Artificial Neural Network Method for Predicting Protein Secondary Structure Content.
Comput. Chem.
Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Kuo-Chen Chou
2002 J jnl
Artificial Neural Network Model for Predicting Protein Subcellular Location.
Comput. Chem.
Yu-Dong Cai, Xiao-Jun Liu, Kuo-Chen Chou
2002 J jnl
Prediction of Protein Structural Classes by Support Vector Machines.
Comput. Chem.
Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Kuo-Chen Chou
2002 J jnl
Support vector machines for predicting HIV protease cleavage sites in protein.
J. Comput. Chem.
Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Kuo-Chen Chou
2001 J jnl
Support Vector Machines for predicting protein structural class.
BMC Bioinform.
Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Guo-Ping Zhou