Yu-Chiao Chiu - RankMe

21 papers Journal 15Unranked 6

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Guest Editorial: Transforming Healthcare and Medicine With Biomedical Informatics and Emerging AI. IEEE J. Biomed. Health Informatics Bobak J. Mortazavi, Yu-Chiao Chiu, Lei Lu, Arun Das, Georgia D. Tourassi, Bjoern M. Eskofier
2024	—	`conf`	MetaphorPrompt - An Analogical Reasoning Approach for Extracting Causal Links from Biological Text. BCB Parth Patel, Yu-Chiao Chiu, Yufei Huang, Jianqiu Zhang
2024	J	`jnl`	Predicting drug response through tumor deconvolution by cancer cell lines. Patterns Yu-Ching Hsu, Yu-Chiao Chiu, Tzu-Pin Lu, Tzu-Hung Hsiao, Yidong Chen
2024	—	`conf`	ReguloGPT: Harnessing GPT for End-to-End Knowledge Graph Construction of Molecular Regulatory Pathways. BHI Xidong Wu, Sumin Jo, Yiming Zeng, Arun Das, Tinghe Zhang, Parth Patel, Yuanjing Wei, Lei Li, Shou-Jiang Gao, Jianqiu Zhang, Dexter Pratt, Yu-Chiao Chiu, Yufei Huang
2024	J	`jnl`	Systems approach for congruence and selection of cancer models towards precision medicine. PLoS Comput. Biol. Jian Zou, Osama Shah, Yu-Chiao Chiu, Tianzhou Ma, Jennifer M. Atkinson, Steffi Oesterreich, Adrian V. Lee, George C. Tseng
2024	J	`jnl`	shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning. Patterns Li-Ju Wang, Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang, Yidong Chen, Yu-Chiao Chiu
2022	J	`jnl`	Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis. Briefings Bioinform. Mario Flores, Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu-Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou-Jiang Gao, Yu-Fang Jin, Yidong Chen, Yufei Huang
2021	J	`jnl`	CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training. BMC Bioinform. Milad Mostavi, Yu-Chiao Chiu, Yidong Chen, Yufei Huang
2020	J	`jnl`	Deep learning of pharmacogenomics resources: moving towards precision oncology. Briefings Bioinform. Yu-Chiao Chiu, Hung-I Harry Chen, Aparna Gorthi, Milad Mostavi, Siyuan Zheng, Yufei Huang, Yidong Chen
2019	J	`jnl`	Convolutional neural network models for cancer type prediction based on gene expression. CoRR Milad Mostavi, Yu-Chiao Chiu, Yufei Huang, Yidong Chen
2018	J	`jnl`	Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme. IEEE ACM Trans. Comput. Biol. Bioinform. Yu-Chiao Chiu, Tzu-Hung Hsiao, Li-Ju Wang, Yidong Chen, Eric Y. Chuang
2018	J	`jnl`	GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization. CoRR Hung-I Harry Chen, Yu-Chiao Chiu, Tinghe Zhang, Songyao Zhang, Yufei Huang, Yidong Chen
2018	J	`jnl`	Predicting drug response of tumors from integrated genomic profiles by deep neural networks. CoRR Yu-Chiao Chiu, Hung-I Harry Chen, Tinghe Zhang, Songyao Zhang, Aparna Gorthi, Li-Ju Wang, Yufei Huang, Yidong Chen
2017	J	`jnl`	Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival. BMC Bioinform. Yu-Chiao Chiu, Li-Ju Wang, Tzu-Pin Lu, Tzu-Hung Hsiao, Eric Y. Chuang, Yidong Chen
2016	J	`jnl`	A simple gene set-based method accurately predicts the synergy of drug pairs. BMC Syst. Biol. Yu-Ching Hsu, Yu-Chiao Chiu, Yidong Chen, Tzu-Hung Hsiao, Eric Y. Chuang
2015	—	`conf`	Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme. BIBM Yu-Chiao Chiu, Kai-Wen Liang, Tzu-Hung Hsiao, Yidong Chen, Eric Y. Chuang
2015	—	`conf`	Patho-finder - A fast and accurate program for pathogen identification through RNA-seq. BIBM Chin-Ting Wu, Tzu-Hung Hsiao, Yu-Chiao Chiu, Yu-Ching Hsu, Eric Y. Chuang, Yidong Chen
2014	J	`jnl`	Note-Taking for 3D Curricular Contents using Markerless Augmented Reality. Interact. Comput. Mau-Tsuen Yang, Yu-Chiao Chiu
2013	—	`conf`	Characterization of conditions for competing endogenous RNA regulation in GBM. GENSiPS Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen
2013	J	`jnl`	Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis. Adv. Bioinformatics Mario Flores, Tzu-Hung Hsiao, Yu-Chiao Chiu, Eric Y. Chuang, Yufei Huang, Yidong Chen
2013	—	`conf`	Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme. BIBM Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen