Yovani Marrero-Ponce

29 papers Journal 29
YearRankTypeTitle / Venue / Authors
2025 J jnl
Mapping the Chemical Space of Antiviral Peptides with Half-Space Proximal and Metadata Networks Through Interactive Data Mining.
Comput.
Daniela de Llano García, Yovani Marrero-Ponce, Guillermín Agüero-Chapín, Hortensia Rodríguez, Francesc J. Ferri, Edgar A. Márquez, José Ramón Mora, Félix Martínez-Ríos, Yunierkis Pérez-Castillo
2025 J jnl
Optimal Descriptor Subset Search via Chemical Information and Target Activity-Guided Algorithm for Antimicrobial Peptide Prediction.
J. Chem. Inf. Model.
Luis A. García-González, Yovani Marrero-Ponce, César R. García-Jacas, Sergio A. Aguila Puentes
2024 J jnl
MD-LAIs Software: Computing Whole-Sequence and Amino Acid-Level "Embeddings" for Peptides and Proteins.
J. Chem. Inf. Model.
Ernesto Contreras-Torres, Yovani Marrero-Ponce
2024 J jnl
Rethinking the applicability domain analysis in QSAR models.
J. Comput. Aided Mol. Des.
José Ramón Mora, Edgar Márquez, Noel Pérez-Pérez, Ernesto Contreras-Torres, Yunierkis Pérez-Castillo, Guillermín Agüero-Chapín, Félix Martínez-Ríos, Yovani Marrero-Ponce, Stephen J. Barigye
2023 J jnl
From a coenzyme-like mechanism to homochirality.
Biosyst.
Osmel Martín, Yoelsy Leyva, José Suárez-Lezcano, Yunierkis Pérez-Castillo, Yovani Marrero-Ponce
2020 J jnl
Distributed and multicore QuBiLS-MIDAS software v2.0: Computing chiral, fuzzy, weighted and truncated geometrical molecular descriptors based on tensor algebra.
J. Comput. Chem.
César R. García-Jacas, Yovani Marrero-Ponce, Ricardo Vivas-Reyes, José Suárez-Lezcano, Félix Martínez-Ríos, Julio E. Terán, Longendri Aguilera-Mendoza
2020 J jnl
MuLiMs-MCoMPAs: A Novel Multiplatform Framework to Compute Tensor Algebra-Based Three-Dimensional Protein Descriptors.
J. Chem. Inf. Model.
Ernesto Contreras-Torres, Yovani Marrero-Ponce, Julio E. Terán, César R. García-Jacas, Carlos A. Brizuela, Juan Carlos Sánchez-Rodríguez
2020 J jnl
Smoothed Spherical Truncation based on Fuzzy Membership Functions: Application to the Molecular Encoding.
J. Comput. Chem.
César R. García-Jacas, Yovani Marrero-Ponce, Carlos A. Brizuela, José Suárez-Lezcano, Félix Martínez-Ríos
2019 J jnl
Graph-based data integration from bioactive peptide databases of pharmaceutical interest: toward an organized collection enabling visual network analysis.
Bioinform.
Longendri Aguilera-Mendoza, Yovani Marrero-Ponce, Jesus A. Beltran, Roberto Tellez-Ibarra, Hugo A. Guillen-Ramirez, Carlos A. Brizuela
2018 J jnl
Choquet integral-based fuzzy molecular characterizations: when global definitions are computed from the dependency among atom/bond contributions (LOVIs/LOEIs).
J. Cheminformatics
César R. García-Jacas, Lisset Cabrera-Leyva, Yovani Marrero-Ponce, José Suárez-Lezcano, Fernando Cortés-Guzmán, Mario Pupo-Meriño, Ricardo Vivas-Reyes
2017 J jnl
QuBiLS-MAS, open source multi-platform software for atom- and bond-based topological (2D) and chiral (2.5D) algebraic molecular descriptors computations.
J. Cheminformatics
José R. Valdés-Martiní, Yovani Marrero-Ponce, César R. García-Jacas, Karina Martínez-Mayorga, Stephen J. Barigye, Yasser Silveira Vaz d'Almeida, Hai Pham-The, Facundo Pérez-Giménez, Carlos A. Morell
2016 J jnl
Examining the predictive accuracy of the novel 3D N-linear algebraic molecular codifications on benchmark datasets.
J. Cheminformatics
César R. García-Jacas, Ernesto Contreras-Torres, Yovani Marrero-Ponce, Mario Pupo-Meriño, Stephen J. Barigye, Lisset Cabrera-Leyva
2016 J jnl
Relational Agreement Measures for Similarity Searching of Cheminformatic Data Sets.
IEEE ACM Trans. Comput. Biol. Bioinform.
Oscar Miguel Rivera-Borroto, José Manuel García de la Vega, Yovani Marrero-Ponce, Ricardo Grau
2015 J jnl
Overlap and diversity in antimicrobial peptide databases: compiling a non-redundant set of sequences.
Bioinform.
Longendri Aguilera-Mendoza, Yovani Marrero-Ponce, Roberto Tellez-Ibarra, Monica T. Llorente-Quesada, Jesús Salgado, Stephen J. Barigye, Jun Liu
2015 J jnl
ProtDCal: A program to compute general-purpose-numerical descriptors for sequences and 3D-structures of proteins.
BMC Bioinform.
Yasser B. Ruiz-Blanco, Waldo Paz, James Green, Yovani Marrero-Ponce
2014 J jnl
QuBiLS-MIDAS: A parallel free-software for molecular descriptors computation based on multilinear algebraic maps.
J. Comput. Chem.
César R. García-Jacas, Yovani Marrero-Ponce, Liesner Acevedo-Martínez, Stephen J. Barigye, José R. Valdés-Martiní, Ernesto Contreras-Torres
2013 J jnl
Relations frequency hypermatrices in mutual, conditional and joint entropy-based information indices.
J. Comput. Chem.
Stephen J. Barigye, Yovani Marrero-Ponce, Yoan Martínez López, Francisco Torrens, Luis Manuel Artiles-Martínez, Ricardo W. Pino-Urias, Oscar Martínez Santiago
2012 J jnl
Derivatives in discrete mathematics: a novel graph-theoretical invariant for generating new 2/3D molecular descriptors. I. Theory and QSPR application.
J. Comput. Aided Mol. Des.
Yovani Marrero-Ponce, Oscar Martínez Santiago, Yoan Martínez López, Stephen J. Barigye, Francisco Torrens
2012 J jnl
Retrained Classification of Tyrosinase Inhibitors and "In Silico" Potency Estimation by Using Atom-Type Linear Indices: A Powerful Tool for Speed up the Discovery of Leads.
Int. J. Chemoinformatics Chem. Eng.
Gerardo M. Casañola-Martín, Mahmud Tareq Hassan Khan, Huong Le-Thi-Thu, Yovani Marrero-Ponce, Ramón García-Domenech, Francisco Torrens, Antonio Rescigno
2011 J jnl
Comparison of Combinatorial Clustering Methods on Pharmacological Data Sets Represented by Machine Learning-Selected Real Molecular Descriptors.
J. Chem. Inf. Model.
Oscar Miguel Rivera-Borroto, Yovani Marrero-Ponce, José Manuel García de la Vega, Ricardo del Corazón Grau-Ábalo
2008 J jnl
Applying pattern recognition methods plus quantum and physico-chemical molecular descriptors to analyze the anabolic activity of structurally diverse steroids.
J. Comput. Chem.
Yoanna María Alvarez-Ginarte, Yovani Marrero-Ponce, José Alberto Ruiz-García, Luis Alberto Montero-Cabrera, José Manuel García de la Vega, Pedro Noheda Marin, Rachel Crespo-Otero, Francisco Torrens Zaragoza, Ramón García-Domenech
2008 J jnl
Bond-based 3D-chiral linear indices: Theory and QSAR applications to central chirality codification.
J. Comput. Chem.
Juan A. Castillo-Garit, Yovani Marrero-Ponce, Francisco Torrens, Ramón García-Domenech, Vicente Romero-Zaldivar
2008 J jnl
Bond-based linear indices in QSAR: computational discovery of novel anti-trichomonal compounds.
J. Comput. Aided Mol. Des.
Yovani Marrero-Ponce, Alfredo Meneses-Marcel, Oscar Miguel Rivera-Borroto, Ramón García-Domenech, Jesús Vicente de Julián-Ortiz, Alina Montero-Torres, José Antonio Escario, Alicia Gómez Barrio, David Montero Pereira, Juan José Nogal, Ricardo Grau, Francisco Torrens, Christian Vogel, Vicente J. Arán
2007 J jnl
Bond-based 2D
J. Comput. Aided Mol. Des.
Yovani Marrero-Ponce, Mahmud Tareq Hassan Khan, Gerardo M. Casañola-Martín, Arjumand Ather, Mukhlis N. Sultankhodzhaev, Ramón García-Domenech, Francisco Torrens, Richard Rotondo
2006 J jnl
Bond-based global and local (bond, group and bond-type) quadratic indices and their applications to computer-aided molecular design, 1. QSPR studies of diverse sets of organic chemicals.
J. Comput. Aided Mol. Des.
Yovani Marrero-Ponce, Francisco Torrens, Ysaias José Alvarado, Richard Rotondo
2005 J jnl
3D-chiral Atom, Atom-type, and Total Non-stochastic and Stochastic Molecular Linear Indices and their Applications to Central Chirality Codification.
J. Comput. Aided Mol. Des.
Yovani Marrero-Ponce, Juan A. Castillo-Garit
2005 J jnl
Ligand-Based Virtual Screening and in Silico Design of New Antimalarial Compounds Using Nonstochastic and Stochastic Total and Atom-Type Quadratic Maps.
J. Chem. Inf. Model.
Yovani Marrero-Ponce, Maité Iyarreta-Veitía, Alina Montero-Torres, Carlos Romero-Zaldivar, Carlos A. Brandt, Priscilla E. Ávila, Karin Kirchgatter, Yanetsy Machado
2004 J jnl
Linear Indices of the "Molecular Pseudograph's Atom Adjacency Matrix": Definition, Significance-Interpretation, and Application to QSAR Analysis of Flavone Derivatives as HIV-1 Integrase Inhibitors.
J. Chem. Inf. Model.
Yovani Marrero-Ponce
2004 J jnl
Tomocomd-Cardd, a novel approach for computer-aided ' rational' drug design: I. Theoretical and experimental assessment of a promising method for computational screening and in silico design of new anthelmintic compounds.
J. Comput. Aided Mol. Des.
Yovani Marrero-Ponce, Juan A. Castillo-Garit, Ervelio Olazabal, Hector S. Serrano, Alcidez Morales, Nilo Castañedo, Froylán Ibarra-Velarde, Alma Huesca-Guillen, Elisa Jorge, Arletys del Valle, Francisco Torrens, Eduardo A. Castro