Yoshihiro Shibuya

12 papers B 1C 2Journal 7Unranked 1
YearRankTypeTitle / Venue / Authors
2025 B conf
Hyper-k-mers: Efficient Streaming k-mers Representation.
RECOMB
Igor Martayan, Lucas Robidou, Yoshihiro Shibuya, Antoine Limasset
2025 J jnl
Processing-in-memory for genomics workloads.
CoRR
William Andrew Simon, Leonid Yavits, Konstantina Koliogeorgi, Yann Falevoz, Yoshihiro Shibuya, Dominique Lavenier, Irem Boybat, Klea Zambaku, Berkan Sahin, Mohammad Sadrosadati, Onur Mutlu, Abu Sebastian, Rayan Chikhi, The BioPIM Consortium, Can Alkan
2023 J jnl
Locality-preserving minimal perfect hashing of
Bioinform.
Giulio Ermanno Pibiri, Yoshihiro Shibuya, Antoine Limasset
2022 C conf
Efficient Reconciliation of Genomic Datasets of High Similarity.
WABI
Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov
2022 J jnl
Locality-Preserving Minimal Perfect Hashing of k-mers.
CoRR
Giulio Ermanno Pibiri, Yoshihiro Shibuya, Antoine Limasset
2022 J jnl
Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to k-Mer Annotation.
J. Comput. Biol.
Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov
2022 — —
Sketching data structures for alignment-free analysis of genomic sequences. (Esquissage de structures de données pour l'analyse de séquences génomiques sans alignements).
Yoshihiro Shibuya
2022 J jnl
Space-efficient representation of genomic k-mer count tables.
Algorithms Mol. Biol.
Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov
2021 C conf
Space-Efficient Representation of Genomic k-Mer Count Tables.
WABI
Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov
2019 J jnl
Better quality score compression through sequence-based quality smoothing.
BMC Bioinform.
Yoshihiro Shibuya, Matteo Comin
2019 — conf
Indexing k-mers in Linear-space for Quality Value Compression.
BIOINFORMATICS
Yoshihiro Shibuya, Matteo Comin
2019 J jnl
Indexing k-mers in linear space for quality value compression.
J. Bioinform. Comput. Biol.
Yoshihiro Shibuya, Matteo Comin