Yonggang Shi - RankMe

149 papers A* 2B 2C 1Misc 1Journal 56Unranked 87

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Wasserstein-Space-Based Framework for Processing Fiber Orientation Geometry in Diffusion MRI. IEEE Trans. Medical Imaging Xinyu Nie, Yonggang Shi
2026	J	`jnl`	End-to-end susceptibility-induced distortion correction for diffusion MRI with unsupervised deep learning. Pattern Recognit. Jianhui Feng, Yonggang Shi, Yuchuan Qiao
2025	—	`conf`	Autoencoder for 4-Dimensional Fiber Orientation Distributions from Diffusion MRI. ISBI Shuo Huang, Lujia Zhong, Yonggang Shi
2025	—	`conf`	EU-Net: Efficient Training of U-Net for Biomedical Image Segmentation. EMA4MICCAI Lujia Zhong, Shuo Huang, Yonggang Shi
2025	—	`conf`	GPU Accelerated Modeling of Cortical Radial and Tangential Connectivity Changes in Neurodegeneration. MICCAI (12) Hongbo Zhang, Xinyu Nie, Jiaxin Yue, Yuan Li, John M. Ringman, Yonggang Shi
2025	—	`conf`	MAC: Towards Accurate and Fast Susceptibility-Induced Distortion Correction for Missing Modality. BIBM Jianhui Feng, Yonggang Shi, Yuchuan Qiao
2025	—	`conf`	Multistage Alignment and Fusion for Multimodal Multiclass Alzheimer's Disease Diagnosis. MICCAI (15) Shuo Huang, Lujia Zhong, Yonggang Shi
2025	—	`conf`	Robust Topographical Representation for Longitudinal Propagation of Tau Pathology. MICCAI (12) Jiaxin Yue, Jianwei Zhang, Xinkai Wang, Yonggang Shi
2025	—	`conf`	Surface-Based Multi-axis Longitudinal Disentanglement Using Contrastive Learning for Alzheimer's Disease. MICCAI (15) Jianwei Zhang, Yonggang Shi
2025	—	`conf`	Tau Pet Harmonization via Surface-Based Diffusion Model. ISBI Jiaxin Yue, Jianwei Zhang, Lujia Zhong, Yonggang Shi
2025	—	`conf`	UFO-3: Unsupervised Three-Compartment Learning for Fiber Orientation Distribution Function Estimation. MICCAI (4) Xueqing Gao, Rizhong Lin, Jianhui Feng, Yonggang Shi, Yuchuan Qiao
2024	—	`conf`	Adaptive Subtype and Stage Inference for Alzheimer's Disease. MICCAI (3) Xinkai Wang, Yonggang Shi
2024	J	`jnl`	Diffusion Model-based FOD Restoration from High Distortion in dMRI. CoRR Shuo Huang, Lujia Zhong, Yonggang Shi
2024	J	`jnl`	Surface-Based Probabilistic Fiber Tracking in Superficial White Matter. IEEE Trans. Medical Imaging Xinyu Nie, Jialiang Ruan, María Concepción García Otaduy, Lea Tenenholz Grinberg, John M. Ringman, Yonggang Shi
2024	—	`conf`	Surface-Based and Shape-Informed U-Fiber Atlasing for Robust Superficial White Matter Connectivity Analysis. MICCAI (2) Yuan Li, Xinyu Nie, Jianwei Zhang, Yonggang Shi
2024	J	`jnl`	TauAD: MRI-free Tau Anomaly Detection in PET Imaging via Conditioned Diffusion Models. CoRR Lujia Zhong, Shuo Huang, Jiaxin Yue, Jianwei Zhang, Zhiwei Deng, Wenhao Chi, Yonggang Shi
2024	J	`jnl`	Vessel density mapping of small cerebral vessels on 3D high resolution black blood MRI. NeuroImage Mona Sharifi Sarabi, Samantha J. Ma, Kay Jann, John M. Ringman, Danny J. J. Wang, Yonggang Shi
2024	J	`jnl`	ssProp: Energy-Efficient Training for Convolutional Neural Networks with Scheduled Sparse Back Propagation. CoRR Lujia Zhong, Shuo Huang, Yonggang Shi
2023	—	`conf`	A Groupwise Method for the Reconstruction of Hypergraph Representation of Resting-State Functional Networks. MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI Mingyang Xia, Yonggang Shi
2023	—	`conf`	Automated Mapping of Residual Distortion Severity in Diffusion MRI. CDMRI@MICCAI Shuo Huang, Lujia Zhong, Yonggang Shi
2023	—	`conf`	FASSt: Filtering via Symmetric Autoencoder for Spherical Superficial White Matter Tractography. CDMRI@MICCAI Yuan Li, Xinyu Nie, Yao Fu, Yonggang Shi
2023	—	`conf`	Flow-Based Geometric Interpolation of Fiber Orientation Distribution Functions. MICCAI (8) Xinyu Nie, Yonggang Shi
2023	—	`conf`	Personalized Patch-Based Normality Assessment of Brain Atrophy in Alzheimer's Disease. MICCAI (5) Jianwei Zhang, Yonggang Shi
2023	—	`conf`	Shape-Aware 3D Small Vessel Segmentation with Local Contrast Guided Attention. MICCAI (4) Zhiwei Deng, Songnan Xu, Jianwei Zhang, Jiong Zhang, Danny J. J. Wang, Lirong Yan, Yonggang Shi
2023	J	`jnl`	Small object in the dark light scene using dual-branch channel and spatial. J. Electronic Imaging Zhuoyan Xia, Yonggang Shi
2023	—	`conf`	Uncovering Heterogeneity in Alzheimer's Disease from Graphical Modeling of the Tau Spatiotemporal Topography. MICCAI (5) Jiaxin Yue, Yonggang Shi
2022	J	`jnl`	Age differences in diffusivity in the locus coeruleus and its ascending noradrenergic tract. NeuroImage Shai Porat, Francesca Sibilia, Josephine Yoon, Yonggang Shi, Martin J. Dahl, Markus Werkle-Bergner, Sandra Düzel, Nils Christian Bodammer, Ulman Lindenberger, Simone Kühn, Mara Mather
2022	—	`conf`	Personalized dMRI Harmonization on Cortical Surface. MICCAI (6) Yihao Xia, Yonggang Shi
2022	J	`jnl`	Retinal ganglion cell endowment is correlated with optic tract fiber cross section, not density. NeuroImage Huseyin O. Taskin, Yuchuan Qiao, Valerie J. Sydnor, Matthew Cieslak, Edda B. Haggerty, Theodore D. Satterthwaite, Jessica I. W. Morgan, Yonggang Shi, Geoffrey Karl Aguirre
2022	J	`jnl`	Unsupervised Deep Learning for FOD-Based Susceptibility Distortion Correction in Diffusion MRI. IEEE Trans. Medical Imaging Yuchuan Qiao, Yonggang Shi
2021	—	`conf`	Application of Random Simulation Algorithm in Physical Education Teaching Evaluation. CSIA (2) Yonggang Shi
2021	—	`conf`	Dynamic Sub-graph Learning for Patch-Based Cortical Folding Classification. MLCN@MICCAI Zhiwei Deng, Jiong Zhang, Yonggang Shi
2021	J	`jnl`	Parallel Transport Tractography. IEEE Trans. Medical Imaging Dogu Baran Aydogan, Yonggang Shi
2021	—	`conf`	Personalized Matching and Analysis of Cortical Folding Patterns via Patch-Based Intrinsic Brain Mapping. MICCAI (7) Jiong Zhang, Yonggang Shi
2021	J	`jnl`	Retrospective motion artifact correction of structural MRI images using deep learning improves the quality of cortical surface reconstructions. NeuroImage Ben A. Duffy, Lu Zhao, Farshid Sepehrband, Joyce Min, Danny J. J. Wang, Yonggang Shi, Arthur W. Toga, Hosung Kim
2021	J	`jnl`	Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? NeuroImage Kurt G. Schilling, François Rheault, Laurent Petit, Colin B. Hansen, Vishwesh Nath, Fang-Cheng Yeh, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Elda Fischi Gomez, Marco Pizzolato, Mario Ocampo-Pineda, Simona Schiavi, Erick Jorge Canales-Rodríguez, Alessandro Daducci, Cristina Granziera, Giorgio M. Innocenti, Jean-Philippe Thiran, Laura Mancini, Stephen J. Wastling, Sirio Cocozza, Maria Petracca, Giuseppe Pontillo, Matteo Mancini, Sjoerd B. Vos, Vejay N. Vakharia, John S. Duncan, Helena Melero, Lidia Manzanedo, Emilio Sanz-Morales, Ángel Peña-Melián, Fernando Calamante, Arnaud Attye, Ryan P. Cabeen, Laura Korobova, Arthur W. Toga, Anupa Ambili Vijayakumari, Drew Parker, Ragini Verma, Ahmed M. Radwan, Stefan Sunaert, Louise Emsell, Alberto De Luca, Alexander Leemans, Claude J. Bajada, Hamied A. Haroon, Hojjatollah Azadbakht, Maxime Chamberland, Sila Genc, Chantal M. W. Tax, Ping Hong Yeh, Rujirutana Srikanchana, Colin D. Mcknight, Joseph Yuan-Mou Yang, Jian Chen, Claire E. Kelly, Chun-Hung Yeh, Jérôme Cochereau, Jerome J. Maller, Thomas Welton, Fabien Almairac, Kiran K. Seunarine, Chris A. Clark, Fan Zhang, Nikos Makris, Alexandra J. Golby, Yogesh Rathi, Lauren J. O'Donnell, Yihao Xia, Dogu Baran Aydogan, Yonggang Shi, Francisco Guerreiro Fernandes, Mathijs Raemaekers, Shaun Warrington, Stijn Michielse, Alonso Ramirez-Manzanares, Luis Concha, Ramón Aranda, Mariano Rivera Meraz, Garikoitz Lerma-Usabiaga, Lucas Roitman, Lucius S. Fekonja, Navona Calarco, Michael Joseph, Hajer Nakua, Aristotle N. Voineskos, Philippe Karan, Gabrielle Grenier, Jon Haitz Legarreta, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Andrew L. Alexander, Koji Kamagata, Yuya Saito, Wataru Uchida, Christina Andica, Masahiro Abe, Roza G. Bayrak, Claudia A. M. Gandini Wheeler-Kingshott, Egidio D'Angelo, Fulvia Palesi, Giovanni Savini, Nicolò Rolandi, Pamela Guevara, Josselin Houenou, Narciso López-López, Jean-François Mangin, Cyril Poupon, Claudio Román, Andrea Vázquez, Chiara Maffei, Mavilde Arantes, José Paulo Andrade, Susana Maria Silva, Vince D. Calhoun, Eduardo Caverzasi, Simone Sacco, Michael Lauricella, Franco Pestilli, Daniel Bullock, Yang Zhan, Edith Brignoni-Pérez, Catherine Lebel, Jess E. Reynolds, Igor Nestrasil, René Labounek, Christophe Lenglet, Amy Paulson, Stefania Aulicka, Sarah R. Heilbronner, Katja Heuer, Bramsh Qamar Chandio, Javier Guaje, Wei Tang, Eleftherios Garyfallidis, Rajikha Raja, Adam W. Anderson, Bennett A. Landman, Maxime Descoteaux
2020	J	`jnl`	3D Retinal Vessel Density Mapping With OCT-Angiography. IEEE J. Biomed. Health Informatics Mona Sharifi Sarabi, Maziyar M. Khansari, Jiong Zhang, Sam Kushner-Lenhoff, Jin-Kyu Gahm, Yuchuan Qiao, Amir H. Kashani, Yonggang Shi
2020	J	`jnl`	3D Shape Modeling and Analysis of Retinal Microvasculature in OCT-Angiography Images. IEEE Trans. Medical Imaging Jiong Zhang, Yuchuan Qiao, Mona Sharifi Sarabi, Maziyar M. Khansari, Jin-Kyu Gahm, Amir H. Kashani, Yonggang Shi
2020	J	`jnl`	A probabilistic atlas of locus coeruleus pathways to transentorhinal cortex for connectome imaging in Alzheimer's disease. NeuroImage Wei Sun, Yuchun Tang, Yuchuan Qiao, Xinting Ge, Mara Mather, John M. Ringman, Yonggang Shi
2020	J	`jnl`	Automated Deformation-Based Analysis of 3D Optical Coherence Tomography in Diabetic Retinopathy. IEEE Trans. Medical Imaging Maziyar M. Khansari, Jiong Zhang, Yuchuan Qiao, Jin-Kyu Gahm, Mona Sharifi Sarabi, Amir H. Kashani, Yonggang Shi
2020	J	`jnl`	Automated Tortuosity Analysis of Nerve Fibers in Corneal Confocal Microscopy. IEEE Trans. Medical Imaging Yitian Zhao, Jiong Zhang, Ella Pereira, Yalin Zheng, Pan Su, Jianyang Xie, Yifan Zhao, Yonggang Shi, Hong Qi, Jiang Liu, Yonghuai Liu
2020	J	`jnl`	Corrections to "Automated Tortuosity Analysis of Nerve Fibers in Corneal Confocal Microscopy". IEEE Trans. Medical Imaging Yitian Zhao, Jiong Zhang, Ella Pereira, Yalin Zheng, Pan Su, Jianyang Xie, Yifan Zhao, Yonggang Shi, Hong Qi, Jiang Liu, Yonghuai Liu
2020	J	`jnl`	Groupwise track filtering via iterative message passing and pruning. NeuroImage Yihao Xia, Yonggang Shi
2020	J	`jnl`	Morphometric development of the human fetal cerebellum during the early second trimester. NeuroImage Feifei Xu, Xinting Ge, Yonggang Shi, Zhonghe Zhang, Yuchun Tang, Xiangtao Lin, Gaojun Teng, Fengchao Zang, Nuonan Gao, Haihong Liu, Arthur W. Toga, Shuwei Liu
2020	—	`conf`	Unsupervised Deep Learning for Susceptibility Distortion Correction in Connectome Imaging. MICCAI (7) Yuchuan Qiao, Yonggang Shi
2019	—	`conf`	3D Surface-Based Geometric and Topological Quantification of Retinal Microvasculature in OCT-Angiography via Reeb Analysis. MICCAI (1) Jiong Zhang, Amir H. Kashani, Yonggang Shi
2019	—	`conf`	A Fast Fiber k-Nearest-Neighbor Algorithm with Application to Group-Wise White Matter Topography Analysis. IPMI Junyan Wang, Yonggang Shi
2019	J	`jnl`	Characterization of lenticulostriate arteries with high resolution black-blood T1-weighted turbo spin echo with variable flip angles at 3 and 7 Tesla. NeuroImage Samantha J. Ma, Mona Sharifi Sarabi, Lirong Yan, Xingfeng Shao, Yue Chen, Qi Yang, Kay Jann, Arthur W. Toga, Yonggang Shi, Danny J. J. Wang
2019	J	`jnl`	FOD-based registration for susceptibility distortion correction in brainstem connectome imaging. NeuroImage Yuchuan Qiao, Wei Sun, Yonggang Shi
2019	J	`jnl`	Limits to anatomical accuracy of diffusion tractography using modern approaches. NeuroImage Kurt G. Schilling, Vishwesh Nath, Colin B. Hansen, Prasanna Parvathaneni, Justin A. Blaber, Yurui Gao, Peter Neher, Dogu Baran Aydogan, Yonggang Shi, Mario Ocampo-Pineda, Simona Schiavi, Alessandro Daducci, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, David Romascano, Gaëtan Rensonnet, Marco Pizzolato, Bennett A. Landman
2019	—	`conf`	Surface-Based Tracking of U-Fibers in the Superficial White Matter. MICCAI (3) Jin-Kyu Gahm, Yonggang Shi
2019	—	`conf`	Topographic Filtering of Tractograms as Vector Field Flows. MICCAI (3) Xinyu Nie, Yonggang Shi
2018	J	`jnl`	A probabilistic atlas of human brainstem pathways based on connectome imaging data. NeuroImage Yuchun Tang, Wei Sun, Arthur W. Toga, John M. Ringman, Yonggang Shi
2018	J	`jnl`	Computational Analysis of Cell Dynamics in Videos with Hierarchical-Pooled Deep-Convolutional Features. J. Comput. Biol. Fengqian Pang, Heng Li, Yonggang Shi, Zhiwen Liu
2018	—	`conf`	FOD-Based Registration for Susceptibility Distortion Correction in Connectome Imaging. CNI@MICCAI Yuchuan Qiao, Wei Sun, Yonggang Shi
2018	—	`conf`	GIFE: Efficient and Robust Group-Wise Isometric Fiber Embedding. CNI@MICCAI Junyan Wang, Yonggang Shi
2018	J	`jnl`	Modeling topographic regularity in structural brain connectivity with application to tractogram filtering. NeuroImage Junyan Wang, Dogu Baran Aydogan, Rohit Varma, Arthur W. Toga, Yonggang Shi
2018	—	`conf`	Patch-Based Mapping of Transentorhinal Cortex with a Distributed Atlas. MICCAI (3) Jin-Kyu Gahm, Yuchun Tang, Yonggang Shi
2018	J	`jnl`	Reconnection of Interrupted Curvilinear Structures via Cortically Inspired Completion for Ophthalmologic Images. IEEE Trans. Biomed. Eng. Jiong Zhang, Erik J. Bekkers, Da Chen, Tos T. J. M. Berendschot, Jan Schouten, Josien P. W. Pluim, Yonggang Shi, Behdad Dashtbozorg, Bart M. ter Haar Romeny
2018	J	`jnl`	Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space. Medical Image Anal. Jin-Kyu Gahm, Yonggang Shi
2018	J	`jnl`	Topological false discovery rates for brain mapping based on signal height. NeuroImage Junning Li, Jin-Kyu Gahm, Yonggang Shi, Arthur W. Toga
2018	J	`jnl`	Tracking and validation techniques for topographically organized tractography. NeuroImage Dogu Baran Aydogan, Yonggang Shi
2017	—	`conf`	A Whole-Brain Reconstruction Approach for FOD Modeling from Multi-Shell Diffusion MRI. CNI@MICCAI Wei Sun, Junling Li, Yonggang Shi
2017	—	`conf`	Cell dynamic morphology analysis by deep convolutional features. EMBC Heng Li, Zhiwen Liu, Fengqian Pang, Yonggang Shi
2017	—	`conf`	Characterization of single cell dynamic morphology by local deformation pattern modeling. EMBC Heng Li, Zhiwen Liu, Fengqian Pang, Yonggang Shi
2017	—	`conf`	FOD Restoration for Enhanced Mapping of White Matter Lesion Connectivity. MICCAI (1) Wei Sun, Lilyana Amezcua, Yonggang Shi
2017	—	`conf`	Holistic Mapping of Striatum Surfaces in the Laplace-Beltrami Embedding Space. MICCAI (1) Jin-Kyu Gahm, Yonggang Shi
2017	—	`conf`	Kernel-Regularized ICA for Computing Functional Topography from Resting-State fMRI. MICCAI (1) Junyan Wang, Yonggang Shi
2017	J	`jnl`	Preface. Comput. Medical Imaging Graph. Xinjian Chen, Shuo Li, Emanuele Trucco, Jimmy Jiang Liu, Yonggang Shi, Beiji Zou
2017	—	`conf`	Topographic Regularity for Tract Filtering in Brain Connectivity. IPMI Junyan Wang, Dogu Baran Aydogan, Rohit Varma, Arthur W. Toga, Yonggang Shi
2016	J	`jnl`	Automated retinofugal visual pathway reconstruction with multi-shell HARDI and FOD-based analysis. NeuroImage Alexandra Kammen, Meng Law, Bosco S. Tjan, Arthur W. Toga, Yonggang Shi
2016	J	`jnl`	Mapping Brain Anatomical Connectivity Using Diffusion Magnetic Resonance Imaging: Structural connectivity of the human brain. IEEE Signal Process. Mag. Junning Li, Yonggang Shi, Arthur W. Toga
2016	—	`conf`	Probabilistic Tractography for Topographically Organized Connectomes. MICCAI (1) Dogu Baran Aydogan, Yonggang Shi
2016	—	`conf`	Riemannian Metric Optimization for Connectivity-Driven Surface Mapping. MICCAI (1) Jin-Kyu Gahm, Yonggang Shi
2016	J	`jnl`	Transformation Invariant Control of Voxel-Wise False Discovery Rate. IEEE Trans. Medical Imaging Junning Li, Yonggang Shi, Arthur W. Toga
2016	J	`jnl`	基于图割和水平集的肾脏医学图像分割 (Renal Cortex Segmentation Using Graph Cuts and Level Sets). 计算机科学 Yonggang Shi, Jishuang Tan, Zhiwen Liu
2015	—	`conf`	Analyzing dynamic cellular morphology in time-lapsed images enabled by cellular deformation pattern recognition. EMBC Heng Li, Zhiwen Liu, Fengqian Pang, Zhiyi Fan, Yonggang Shi
2015	—	`conf`	Automated multi-atlas labeling of the fornix and its integrity in alzheimer's disease. ISBI Yan Jin, Yonggang Shi, Liang Zhan, Paul M. Thompson
2015	—	`conf`	Controlling False Discovery Rate in Signal Space for Transformation-Invariant Thresholding of Statistical Maps. IPMI Junning Li, Yonggang Shi, Arthur W. Toga
2015	J	`jnl`	Development of the human fetal hippocampal formation during early second trimester. NeuroImage Xinting Ge, Yonggang Shi, Junning Li, Zhonghe Zhang, Xiangtao Lin, Jinfeng Zhan, Haitao Ge, Junhai Xu, Qiaowen Yu, Yuan Leng, Gaojun Teng, Lei Feng, Haiwei Meng, Yuchun Tang, Fengchao Zang, Arthur W. Toga, Shuwei Liu
2015	J	`jnl`	Fiber Orientation and Compartment Parameter Estimation From Multi-Shell Diffusion Imaging. IEEE Trans. Medical Imaging Giang Tran, Yonggang Shi
2015	J	`jnl`	Quantitative analysis of live lymphocytes morphology and intracellular motion in microscopic images. Biomed. Signal Process. Control. Yali Huang, Zhiwen Liu, Yonggang Shi
2015	J	`jnl`	Quaternion generic Fourier descriptor for color object recognition. Pattern Recognit. Heng Li, Zhiwen Liu, Yali Huang, Yonggang Shi
2015	B	`conf`	The measurement of cell viability based on temporal bag of words for image sequences. ICIP Fengqian Pang, Zhiwen Liu, Heng Li, Yonggang Shi
2015	—	`conf`	Track Filtering via Iterative Correction of TDI Topology. MICCAI (1) Dogu Baran Aydogan, Yonggang Shi
2014	J	`jnl`	Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics. NeuroImage Yan Jin, Yonggang Shi, Liang Zhan, Boris A. Gutman, Greig I. de Zubicaray, Katie L. McMahon, Margaret J. Wright, Arthur W. Toga, Paul M. Thompson
2014	—	`conf`	Diffusion of Fiber Orientation Distribution Functions with a Rotation-Induced Riemannian Metric. MICCAI (3) Junning Li, Yonggang Shi, Arthur W. Toga
2014	J	`jnl`	Fast Local Trust Region Technique for Diffusion Tensor Registration Using Exact Reorientation and Regularization. IEEE Trans. Medical Imaging Junning Li, Yonggang Shi, Giang Tran, Ivo D. Dinov, Danny J. J. Wang, Arthur W. Toga
2014	J	`jnl`	Metric Optimization for Surface Analysis in the Laplace-Beltrami Embedding Space. IEEE Trans. Medical Imaging Yonggang Shi, Rongjie Lai, Danny J. J. Wang, Daniel Pelletier, David C. Mohr, Nancy L. Sicotte, Arthur W. Toga
2014	—	`conf`	Multi-classification of cell deformation based on object alignment and run length statistic. EMBC Heng Li, Zhiwen Liu, Xing An, Yonggang Shi
2014	—	`conf`	Persistent Reeb Graph Matching for Fast Brain Search. MLMI Yonggang Shi, Junning Li, Arthur W. Toga
2014	—	`conf`	Rotational gradient field for interpolation of fiber orientation distribution in connectivity analysis. ISBI Junning Li, Yonggang Shi, Arthur W. Toga
2013	—	`conf`	Adaptively Constrained Convex Optimization for Accurate Fiber Orientation Estimation with High Order Spherical Harmonics. MICCAI (3) Giang Tran, Yonggang Shi
2013	—	`conf`	Conformal Mapping via Metric Optimization with Application for Cortical Label Fusion. IPMI Yonggang Shi, Rongjie Lai, Arthur W. Toga
2013	J	`jnl`	Cortical Surface Reconstruction via Unified Reeb Analysis of Geometric and Topological Outliers in Magnetic Resonance Images. IEEE Trans. Medical Imaging Yonggang Shi, Rongjie Lai, Arthur W. Toga
2013	—	`conf`	Labeling white matter tracts in hardi by fusing multiple tract atlases with applications to genetics. ISBI Yan Jin, Yonggang Shi, Liang Zhan, Greig I. de Zubicaray, Katie McMahon, Nicholas G. Martin, Margaret J. Wright, Paul M. Thompson
2013	—	`conf`	Locally Weighted Multi-atlas Construction. MBIA Junning Li, Yonggang Shi, Ivo D. Dinov, Arthur W. Toga
2013	—	`conf`	Quantitative Analysis of Lymphocytes Morphology and Motion in Intravital Microscopic Images. EMBC Yali Huang, Zhiwen Liu, Yonggang Shi, Ning Li, Xing An, Xiaoming Gou
2013	J	`jnl`	Spatial-temporal atlas of human fetal brain development during the early second trimester. NeuroImage Jinfeng Zhan, Ivo D. Dinov, Junning Li, Zhonghe Zhang, Sam Hobel, Yonggang Shi, Xiangtao Lin, Alen Zamanyan, Lei Feng, Gaojun Teng, Fang Fang, Yuchun Tang, Fengchao Zang, Arthur W. Toga, Shuwei Liu
2013	—	`conf`	Voxelwise Spectral Diffusional Connectivity and Its Applications to Alzheimer's Disease and Intelligence Prediction. MICCAI (1) Junning Li, Yan Jin, Yonggang Shi, Ivo D. Dinov, Danny J. J. Wang, Arthur W. Toga, Paul M. Thompson
2012	—	`conf`	Automatic Population HARDI White Matter Tract Clustering by Label Fusion of Multiple Tract Atlases. MBIA Yan Jin, Yonggang Shi, Liang Zhan, Junning Li, Greig I. de Zubicaray, Katie McMahon, Nicholas G. Martin, Margaret J. Wright, Paul M. Thompson
2012	—	`conf`	Fast Diffusion Tensor Registration with Exact Reorientation and Regularization. MICCAI (2) Junning Li, Yonggang Shi, Giang Tran, Ivo D. Dinov, Danny J. J. Wang, Arthur W. Toga
2012	—	`conf`	Modeling Dynamic Cellular Morphology in Images. MICCAI (1) Xing An, Zhiwen Liu, Yonggang Shi, Ning Li, Yalin Wang, Shantanu H. Joshi
2012	—	`conf`	Unified Geometry and Topology Correction for Cortical Surface Reconstruction with Intrinsic Reeb Analysis. MICCAI (1) Yonggang Shi, Rongjie Lai, Arthur W. Toga
2011	—	`conf`	3D elastic registration improves HARDI-derived fiber alignment and automated tract clustering. ISBI Yan Jin, Yonggang Shi, Neda Jahanshad, Iman Aganj, Guillermo Sapiro, Arthur W. Toga, Paul M. Thompson
2011	A*	`conf`	Automated corpus callosum extraction via Laplace-Beltrami nodal parcellation and intrinsic geodesic curvature flows on surfaces. ICCV Rongjie Lai, Yonggang Shi, Nancy L. Sicotte, Arthur W. Toga
2011	J	`jnl`	Automated hippocampal shape analysis predicts the onset of dementia in mild cognitive impairment. NeuroImage Sergi G. Costafreda, Ivo D. Dinov, Zhuowen Tu, Yonggang Shi, Cheng-Yi Liu, Iwona Kloszewska, Patrizia Mecocci, Hilkka Soininen, Magda Tsolaki, Bruno Vellas, Lars-Olof Wahlund, Christian Spenger, Arthur W. Toga, Simon Lovestone, Andrew Simmons
2011	—	`conf`	CoRPORATE: Cortical Reconstruction by Pruning Outliers with Reeb Analysis and Topology-Preserving Evolution. IPMI Yonggang Shi, Rongjie Lai, Arthur W. Toga
2011	—	`conf`	Conformal Metric Optimization on Surface (CMOS) for Deformation and Mapping in Laplace-Beltrami Embedding Space. MICCAI (2) Yonggang Shi, Rongjie Lai, Raja Gill, Daniel Pelletier, David C. Mohr, Nancy L. Sicotte, Arthur W. Toga
2011	—	`conf`	Heritability of White Matter Fiber Tract Shapes: A HARDI Study of 198 Twins. MBIA Yan Jin, Yonggang Shi, Shantanu H. Joshi, Neda Jahanshad, Liang Zhan, Greig I. de Zubicaray, Katie McMahon, Nicholas G. Martin, Margaret J. Wright, Arthur W. Toga, Paul M. Thompson
2011	—	`conf`	K-SVD for HARDI denoising. ISBI Vishal Patel, Yonggang Shi, Paul M. Thompson, Arthur W. Toga
2011	—	`conf`	Multi-modal diffeomorphic demons registration based on mutual information. BMEI Ying Li, Yonggang Shi, Fa Jie, Zhiwen Liu, Yong Yuan
2010	J	`jnl`	A Computational Model of Multidimensional Shape. Int. J. Comput. Vis. Xiuwen Liu, Yonggang Shi, Ivo D. Dinov, Washington Mio
2010	—	`conf`	A Model of Volumetric Shape for the Analysis of Longitudinal Alzheimer's Disease Data. ECCV (3) Xinyang Liu, Xiuwen Liu, Yonggang Shi, Paul M. Thompson, Washington Mio
2010	—	`conf`	A Riemannian model of regional degeneration of the hippocampus in Alzheimer's disease. ISBI Xiuwen Liu, Yonggang Shi, Ying Wang, Paul M. Thompson, Washington Mio
2010	—	`conf`	Automated Sulci Identification via Intrinsic Modeling of Cortical Anatomy. MICCAI (3) Yonggang Shi, Bo Sun, Rongjie Lai, Ivo D. Dinov, Arthur W. Toga
2010	J	`jnl`	Mesh-based spherical deconvolution: A flexible approach to reconstruction of non-negative fiber orientation distributions. NeuroImage Vishal Patel, Yonggang Shi, Paul M. Thompson, Arthur W. Toga
2010	A*	`conf`	Metric-induced optimal embedding for intrinsic 3D shape analysis. CVPR Rongjie Lai, Yonggang Shi, Kevin Scheibel, Scott C. Fears, Roger P. Woods, Arthur W. Toga, Tony F. Chan
2010	J	`jnl`	Robust Surface Reconstruction via Laplace-Beltrami Eigen-Projection and Boundary Deformation. IEEE Trans. Medical Imaging Yonggang Shi, Rongjie Lai, Jonathan H. Morra, Ivo D. Dinov, Paul M. Thompson, Arthur W. Toga
2009	—	`conf`	A Method of Quantitative Analysis for Dynamic Cellular Morphological Change. BMEI Xing An, Zhiwen Liu, Chuanfeng Lv, Yonggang Shi
2009	—	`conf`	Cortical Shape Analysis in the Laplace-Beltrami Feature Space. MICCAI (1) Yonggang Shi, Ivo D. Dinov, Arthur W. Toga
2009	—	`conf`	Inverse-Consistent Surface Mapping with Laplace-Beltrami Eigen-Features. IPMI Yonggang Shi, Jonathan H. Morra, Paul M. Thompson, Arthur W. Toga
2009	J	`jnl`	Joint Sulcal Detection on Cortical Surfaces With Graphical Models and Boosted Priors. IEEE Trans. Medical Imaging Yonggang Shi, Zhuowen Tu, Allan L. Reiss, Rebecca A. Dutton, Agatha D. Lee, Albert M. Galaburda, Ivo D. Dinov, Paul M. Thompson, Arthur W. Toga
2009	—	`conf`	Laplace-Beltrami Nodal Counts: A New Signature for 3D Shape Analysis. ISBI Rongjie Lai, Yonggang Shi, Ivo D. Dinov, Tony F. Chan, Arthur W. Toga
2009	—	`conf`	Mapping Hippocampal Atrophy with a Multi-Scale Model of Shape. ISBI Xinyang Liu, Yonggang Shi, Jonathan H. Morra, Xiuwen Liu, Paul M. Thompson, Washington Mio
2009	—	`conf`	Mesh-Based Spherical Deconvolution for Physically Valid Fiber Orientation Reconstruction from Diffusion-Weighted MRI. ISBI Vishal Patel, Yonggang Shi, Paul M. Thompson, Arthur W. Toga
2009	J	`jnl`	Pattern of hippocampal shape and volume differences in blind subjects. NeuroImage Natasha Leporé, Yonggang Shi, Franco Lepore, Madeleine Fortin, Patrice Voss, Yi-Yu Chou, Catherine Lord, Maryse Lassonde, Ivo D. Dinov, Arthur W. Toga, Paul M. Thompson
2009	—	`conf`	Wavelet-Based Representation of Biological Shapes. ISVC (1) Bin Dong, Yu Mao, Ivo D. Dinov, Zhuowen Tu, Yonggang Shi, Yalin Wang, Arthur W. Toga
2008	J	`jnl`	A Real-Time Algorithm for the Approximation of Level-Set-Based Curve Evolution. IEEE Trans. Image Process. Yonggang Shi, William Clement Karl
2008	—	`conf`	Anisotropic Laplace-Beltrami eigenmaps: Bridging Reeb graphs and skeletons. CVPR Workshops Yonggang Shi, Rongjie Lai, Sheila Krishna, Nancy L. Sicotte, Ivo D. Dinov, Arthur W. Toga
2008	J	`jnl`	Hamilton-Jacobi Skeleton on Cortical Surfaces. IEEE Trans. Medical Imaging Yonggang Shi, Paul M. Thompson, Ivo D. Dinov, Arthur W. Toga
2008	—	`conf`	Harmonic Surface Mapping with Laplace-Beltrami Eigenmaps. MICCAI (2) Yonggang Shi, Rongjie Lai, Kyle C. Kern, Nancy L. Sicotte, Ivo D. Dinov, Arthur W. Toga
2008	—	`conf`	Models of Normal Variation and Local Contrasts in Hippocampal Anatomy. MICCAI (2) Xinyang Liu, Washington Mio, Yonggang Shi, Ivo D. Dinov, Xiuwen Liu, Natasha Leporé, Franco Lepore, Madeleine Fortin, Patrice Voss, Maryse Lassonde, Paul M. Thompson
2007	J	`jnl`	Direct cortical mapping via solving partial differential equations on implicit surfaces. Medical Image Anal. Yonggang Shi, Paul M. Thompson, Ivo D. Dinov, Stanley J. Osher, Arthur W. Toga
2007	J	`jnl`	Direct mapping of hippocampal surfaces with intrinsic shape context. NeuroImage Yonggang Shi, Paul M. Thompson, Greig I. de Zubicaray, Stephen E. Rose, Zhuowen Tu, Ivo D. Dinov, Arthur W. Toga
2007	—	`conf`	Hamilton-Jacobi Skeletons on Cortical Surfaces with Applications in Characterizing the Gyrification Pattern Inwilliams Syndrome. ISBI Yonggang Shi, Allan L. Reiss, Agatha D. Lee, Rebecca A. Dutton, Ursula Bellugi, Albert M. Galaburda, Julie R. Korenberg, Debra L. Mills, Ivo D. Dinov, Paul M. Thompson, Arthur W. Toga
2007	—	`conf`	Joint Sulci Detection Using Graphical Models and Boosted Priors. IPMI Yonggang Shi, Zhuowen Tu, Allan L. Reiss, Rebecca A. Dutton, Agatha D. Lee, Albert M. Galaburda, Ivo D. Dinov, Paul M. Thompson, Arthur W. Toga
2005	—	`conf`	A Fast Level Set Method Without Solving PDEs. ICASSP (2) Yonggang Shi, William Clement Karl
2005	—	`conf`	Applying Prior Knowledge in the Segmentation of 3D Complex Anatomic Structures. CVBIA Hong Shen, Yonggang Shi, Zhigang Peng
2005	—	`conf`	Real-Time Tracking Using Level Sets. CVPR (2) Yonggang Shi, William Clement Karl
2004	—	`conf`	Differentiable Minimin Shape Distance For Incorporating Topological Priors in Biomedical Imaging. ISBI Yonggang Shi, William Clement Karl
2004	—	`conf`	Level Set Methods for Dynamic Tomography. ISBI Yonggang Shi, William Clement Karl
2004	C	`conf`	Multiple motion and occlusion segmentation with a multiphase level set method. VCIP Yonggang Shi, Janusz Konrad, William Clement Karl
2004	—	`conf`	Performance guarantees in sensor networks. ICASSP (2) Venkatesh Saligrama, Yonggang Shi, William Clement Karl
2004	—	`conf`	Shape reconstruction from unorganized points with a data-driven level set method. ICASSP (3) Yonggang Shi, William Clement Karl
2003	B	`conf`	Curve evolution methods for dynamic tomography with unknown dynamic models. Image Processing Yonggang Shi, William Clement Karl, David A. Castañón
2003	—	`conf`	Tomographic reconstruction of dynamic objects. Computational Imaging Yonggang Shi, William Clement Karl
2002	—	`conf`	Dynamic tomography using curve evolution with spatial-temporal regularization. ICIP (2) Yonggang Shi, William Clement Karl, David A. Castañón
2002	Misc	`conf`	Dynamic tomography with curve evolution methods. ICASSP Yonggang Shi, William Clement Karl