Yong Zhang

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Prediction of soil probiotics based on foundation model representation enhancement and stacked aggregation classifier.
Briefings Bioinform.
Qiang Kang, Haotong Sun, Yayu Wang, Xiaolong Fang, Yuxiang Li, Yong Zhang, Tong Wei, Peng Yin
2024 J jnl
Multi-omics integration for both single-cell and spatially resolved data based on dual-path graph attention auto-encoder.
Briefings Bioinform.
Tongxuan Lv, Yong Zhang, Junlin Liu, Qiang Kang, Lin Liu
2023 J jnl
Computational Approaches and Challenges in Spatial Transcriptomics.
Genom. Proteom. Bioinform.
Shuangsang Fang, Bichao Chen, Yong Zhang, Haixi Sun, Longqi Liu, Shiping Liu, Yuxiang Li, Xun Xu
2021 J jnl
SOAPMetaS: profiling large metagenome datasets efficiently on distributed clusters.
Bioinform.
Shixu He, Zhibo Huang, Xiaohan Wang, Lin Fang, Shengkang Li, Yong Zhang, Gengyun Zhang
2020 J jnl
SOAPTyping: an open-source and cross-platform tool for sequence-based typing for HLA class I and II alleles.
BMC Bioinform.
Yong Zhang, Yongsheng Chen, Huixin Xu, Junbin Fang, Zijian Zhao, Weipeng Hu, Xiaoqin Yang, Jia Ye, Yun Cheng, Jiayin Wang, Weiqiang Sun, Jian Wang, Huanming Yang, Jing Yan, Lin Fang
2018 J jnl
WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update.
Nucleic Acids Res.
Jia Ye, Yong Zhang, Huihai Cui, Jiawei Liu, Yuqing Wu, Yun Cheng, Huixing Xu, Xingxin Huang, Shengting Li, An Zhou, Xiuqing Zhang, Lars Bolund, Qiang Chen, Jian Wang, Huanming Yang, Lin Fang, Chunmei Shi
2010 J jnl
Evolutionary Transients in the Rice Transcriptome.
Genom. Proteom. Bioinform.
Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong
2007 J jnl
MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes.
Nucleic Acids Res.
Yanling Zhang, Yong Zhang, Jun Adachi, Jesper V. Olsen, Rong Shi, Gustavo de Souza, Erica Pasini, Leonard J. Foster, Boris Macek, Alexandre Zougman, Chanchal Kumar, Jacek R. Wisniewski, Jan Wang, Matthias Mann
2006 J jnl
WEGO: a web tool for plotting GO annotations.
Nucleic Acids Res.
Jia Ye, Lin Fang, Hongkun Zheng, Yong Zhang, Jie Chen, Zengjin Zhang, Jing Wang, Shengting Li, Ruiqiang Li, Lars Bolund, Jun Wang
2005 J jnl
ChickVD: a sequence variation database for the chicken genome.
Nucleic Acids Res.
Jing Wang, Ximiao He, Jue Ruan, Mingtao Dai, Jie Chen, Yong Zhang, Yafeng Hu, Chen Ye, Shengting Li, Lijuan Cong, Lin Fang, Bin Liu, Songgang Li, Jian Wang, David W. Burt, Gane Ka-Shu Wong, Jun Yu, Huanming Yang, Jun Wang
2004 J jnl
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.
Nucleic Acids Res.
Wenming Zhao, Jing Wang, Ximiao He, Xiaobing Huang, Yongzhi Jiao, Mingtao Dai, Shulin Wei, Jian Fu, Ye Chen, Xiaoyu Ren, Yong Zhang, Peixiang Ni, Jianguo Zhang, Songgang Li, Jian Wang, Gane Ka-Shu Wong, Hongyu Zhao, Jun Yu, Huanming Yang, Jun Wang