Yong Wang

59 papers B 1C 6Journal 47Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
ClusterMatch aligns single-cell RNA-sequencing data at the multi-scale cluster level via stable matching.
Bioinform.
Teer Ba, Hao Miao, Lirong Zhang, Caixia Gao, Yong Wang
2024 J jnl
Predicting RNA polymerase II transcriptional elongation pausing and associated histone code.
Briefings Bioinform.
Lixin Ren, Wanbiao Ma, Yong Wang
2024 J jnl
SpecLoop predicts cell type-specific chromatin loop via transcription factor cooperation.
Comput. Biol. Medicine
Lixin Ren, Wanbiao Ma, Yong Wang
2023 J jnl
CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network.
Genom. Proteom. Bioinform.
Xiangyu Pan, Zhaoxia Ma, Xinqi Sun, Hui Li, Tingting Zhang, Chen Zhao, Nini Wang, Rasmus Heller, Wing Hung Wong, Wen Wang, Yu Jiang, Yong Wang
2022 J jnl
Annotating regulatory elements by heterogeneous network embedding.
Bioinform.
Yurun Lu, Zhan-Ying Feng, Songmao Zhang, Yong Wang
2022 J jnl
Networked Knowledge and Complex Networks: An Engineering View.
IEEE CAA J. Autom. Sinica
Jinhu Lü, Guanghui Wen, Ruqian Lu, Yong Wang, Songmao Zhang
2021 J jnl
Hydrodynamic Limit of the Boltzmann Equation to the Planar Rarefaction Wave in Three Dimensional Space.
SIAM J. Math. Anal.
Guanfa Wang, Yong Wang, Jiawei Zhou
2021 J jnl
MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting.
Briefings Bioinform.
Meng Zou, Zhana Duren, Qiuyue Yuan, Henry Li, Andrew Paul Hutchins, Wing Hung Wong, Yong Wang
2020 J jnl
ELF: Extract Landmark Features By Optimizing Topology Maintenance, Redundancy, and Specificity.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhan-Ying Feng, Yong Wang
2020 J jnl
ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor.
Quant. Biol.
Jingxue Xin, Junjun Hao, Lang Chen, Tao Zhang, Lei Li, Luonan Chen, Wenmin Zhao, Xuemei Lu, Peng Shi, Yong Wang
2020 J jnl
scTIM: seeking cell-type-indicative marker from single cell RNA-seq data by consensus optimization.
Bioinform.
Zhan-Ying Feng, Xianwen Ren, Yuan Fang, Yining Yin, Chutian Huang, Yimin Zhao, Yong Wang
2019 J jnl
A Semisupervised Classification Approach for Multidomain Networks With Domain Selection.
IEEE Trans. Neural Networks Learn. Syst.
Chuan Chen, Jingxue Xin, Yong Wang, Luonan Chen, Michael K. Ng
2019 J jnl
Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs.
PLoS Comput. Biol.
Yongcui Wang, Shilong Chen, Luonan Chen, Yong Wang
2019 J jnl
Systems biology intertwines with single cell and AI.
BMC Bioinform.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2018 J jnl
Integrating data- and model-driven strategies in systems biology.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2017 J jnl
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations.
BMC Syst. Biol.
Yuzhen Guo, Fengying Tao, Zikai Wu, Yong Wang
2017 J jnl
Understanding biological systems through the lens of data.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2016 J jnl
Computational probing protein-protein interactions targeting small molecules.
Bioinform.
Yong-Cui Wang, Shi-Long Chen, Nai-Yang Deng, Yong Wang
2015 J jnl
NCC-AUC: an AUC optimization method to identify multi-biomarker panel for cancer prognosis from genomic and clinical data.
Bioinform.
Meng Zou, Zhaoqi Liu, Xiang-Sun Zhang, Yong Wang
2015 J jnl
Potts model based on a Markov process computation solves the community structure problem effectively.
CoRR
Hui-Jia Li, Yong Wang, Ling-Yun Wu, Junhua Zhang, Xiang-Sun Zhang
2013 J jnl
Computational systems biology in the big data era.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2013 J jnl
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data.
BMC Syst. Biol.
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang
2013 J jnl
Network predicting drug's anatomical therapeutic chemical code.
Bioinform.
Yong-Cui Wang, Shi-Long Chen, Nai-Yang Deng, Yong Wang
2012 J jnl
A combinatorial model and algorithm for globally searching community structure in complex networks.
J. Comb. Optim.
Xiang-Sun Zhang, Zhen-Ping Li, Rui-Sheng Wang, Yong Wang
2012 J jnl
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats.
BMC Syst. Biol.
Guanying Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto
2012 — conf
A new method to identify repositioned drugs for prostate cancer.
ISB
Zikai Wu, Yong Wang, Luonan Chen
2012 J jnl
A unified computational model for revealing and predicting subtle subtypes of cancers.
BMC Bioinform.
Xian-Wen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang
2012 — conf
Identifying mutated core modules in glioblastoma by integrative network analysis.
ISB
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Junfei Zhao, Xiang-Sun Zhang
2012 J jnl
Modelling biological systems from molecules to dynamical networks.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2012 J jnl
Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection.
BMC Syst. Biol.
Yong Wang, Qiao-Feng Wu, Chen Chen, Ling-Yun Wu, Xian-Zhong Yan, Shuguang Yu, Xiang-Sun Zhang, Fan-Rong Liang
2011 J jnl
Computational systems biology: integration of sequence, structure, network, and dynamics.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2011 J jnl
Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation.
BMC Bioinform.
Xian-Wen Ren, Yong-Cui Wang, Yong Wang, Xiang-Sun Zhang, Nai-Yang Deng
2011 J jnl
Kernel-based data fusion improves the drug-protein interaction prediction.
Comput. Biol. Chem.
Yong-Cui Wang, Chunhua Zhang, Nai-Yang Deng, Yong Wang
2011 J jnl
Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context.
BMC Syst. Biol.
Yong-Cui Wang, Yong Wang, Zhi-Xia Yang, Nai-Yang Deng
2010 J jnl
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains.
BMC Syst. Biol.
Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2010 J jnl
Optimization meets systems biology.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2010 J jnl
Prediction of protein-RNA binding sites by a random forest method with combined features.
Bioinform.
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2009 J jnl
Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases.
PLoS Comput. Biol.
Jiguang Wang, Shi-Hua Zhang, Yong Wang, Luonan Chen, Xiang-Sun Zhang
2009 B conf
Dynamically dysfunctional protein interactions in the development of Alzheimer's disease.
SMC
Zhi-Ping Liu, Yong Wang, Tieqiao Wen, Xiang-Sun Zhang, Weiming Xia, Luonan Chen
2009 J jnl
Evaluating Protein Similarity from Coarse Structures.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yong Wang, Ling-Yun Wu, Ji-Hong Zhang, Zhong-Wei Zhan, Xiang-Sun Zhang, Luonan Chen
2008 J jnl
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures.
Neurocomputing
Rui-Sheng Wang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2008 J jnl
Gene function prediction using labeled and unlabeled data.
BMC Bioinform.
Xing-Ming Zhao, Yong Wang, Luonan Chen, Kazuyuki Aihara
2008 J jnl
Protein cavity clustering based on community structure of pocket similarity network.
Int. J. Bioinform. Res. Appl.
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 C conf
A novel approach based on the combination image of fraction image and normalized mnf image to urban land use/cover mapping.
IGARSS
Su Li, Jianjun Zhou, Wenzheng Li, Dafang Zhuang, Yong Wang
2007 J jnl
Alignment of molecular networks by integer quadratic programming.
Bioinform.
Zhen-Ping Li, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 J jnl
Analysis on multi-domain cooperation for predicting protein-protein interactions.
BMC Bioinform.
Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
2007 — conf
Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering.
PAKDD Workshops
Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 J jnl
Inferring transcriptional regulatory networks from high-throughput data.
Bioinform.
Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 J jnl
Predicting gene ontology functions from protein's regional surface structures.
BMC Bioinform.
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang
2007 J jnl
Supervised classification of protein structures based on convex hull representation.
Int. J. Bioinform. Res. Appl.
Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang
2006 — conf
Alignment of Protein Interaction Networks by Integer Quadratic Programming.
EMBC
Zhen-Ping Li, Yong Wang, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen
2006 C conf
Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network.
TAMC
Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
2006 J jnl
Inferring gene regulatory networks from multiple microarray datasets.
Bioinform.
Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen
2006 C conf
Protein Structure Comparison Based on a Measure of Information Discrepancy.
TAMC
Zikai Wu, Yong Wang, En-Min Feng, Jin-Cheng Zhao
2006 — conf
Supervised Inference of Gene Regulatory Networks by Linear Programming.
ICIC (3)
Yong Wang, Trupti Joshi, Dong Xu, Xiang-Sun Zhang, Luonan Chen
2005 C conf
A WebGIS-based system model of vehicle monitoring central platform.
IGARSS
Yong Wang, Dafang Zhuang, Runhe Shi, Su Li
2005 C conf
A comparison of university of Maryland 1km land cover dataset and a land cover dataset in China.
IGARSS
Hua Chen, Dafang Zhuang, Su Li, Runhe Shi, Yong Wang, Xinfang Yu
2005 J jnl
Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping.
J. Bioinform. Comput. Biol.
Xiang-Sun Zhang, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, Luonan Chen
2005 C conf
Monitoring the biophysical composition changes of urban environments using normalized spectral mixture analysis.
IGARSS
Su Li, Dafang Zhuang, Runhe Shi, Yong Wang