Yishai Shimoni

11 papers A 1Misc 1Journal 9
YearRankTypeTitle / Venue / Authors
2025 J jnl
BMFM-RNA: An Open Framework for Building and Evaluating Transcriptomic Foundation Models.
CoRR
Bharath Dandala, Michael M. Danziger, Ella Barkan, Tanwi Biswas, Viatcheslav Gurev, Jianying Hu, Matthew Madgwick, Akira Koseki, Tal Kozlovski, Michal Rosen-Zvi, Yishai Shimoni, Ching-Huei Tsou
2025 A conf
Hierarchical Bias-Driven Stratification for Interpretable Causal Effect Estimation.
AISTATS
Lucile Ter-Minassian, Liran Szlak, Ehud Karavani, Christopher C. Holmes, Yishai Shimoni
2024 J jnl
Does your model understand genes? A benchmark of gene properties for biological and text models.
CoRR
Yoav Kan-Tor, Michael Morris Danziger, Eden Zohar, Matan Ninio, Yishai Shimoni
2024 J jnl
Hierarchical Bias-Driven Stratification for Interpretable Causal Effect Estimation.
CoRR
Lucile Ter-Minassian, Liran Szlak, Ehud Karavani, Chris C. Holmes, Yishai Shimoni
2021 Misc conf
Towards effect estimation of COVID-19 Non-pharmaceutical Interventions.
AMIA
Vesna Resende Barros, Victor Akinwande, Itay Manes, Osnat Bar-Shira, Celia Cintas, Yishai Shimoni, Michal Rosen-Zvi
2019 J jnl
A discriminative approach for finding and characterizing positivity violations using decision trees.
CoRR
Ehud Karavani, Peter Bak, Yishai Shimoni
2019 J jnl
An Evaluation Toolkit to Guide Model Selection and Cohort Definition in Causal Inference.
CoRR
Yishai Shimoni, Ehud Karavani, Sivan Ravid, Peter Bak, Tan Hung Ng, Sharon Hensley Alford, Denise Meade, Yaara Goldschmidt
2018 J jnl
Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification.
PLoS Comput. Biol.
Yishai Shimoni
2018 J jnl
Benchmarking Framework for Performance-Evaluation of Causal Inference Analysis.
CoRR
Yishai Shimoni, Chen Yanover, Ehud Karavani, Yaara Goldschmidt
2013 J jnl
Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling.
PLoS Comput. Biol.
Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A. Logsdon, Gaurav Pandey, Benjamin A. Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H. Mecham, Oscar M. Rueda, Jorg Tost, Christina Curtis, Mariano J. Alvarez, Vessela N. Kristensen, Samuel Aparicio, Anne-Lise Børresen-Dale, Carlos Caldas, Andrea Califano, Stephen H. Friend, Trey Ideker, Eric E. Schadt, Gustavo A. Stolovitzky, Adam A. Margolin
2010 J jnl
Plato's Cave Algorithm: Inferring Functional Signaling Networks from Early Gene Expression Shadows.
PLoS Comput. Biol.
Yishai Shimoni, Marc Y. Fink, Soon-gang Choi, Stuart C. Sealfon