Ying Xu - RankMe

140 papers A* 1A 3B 4C 7Misc 7Journal 87Unranked 29

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A regional augmented PPP algorithm for offshore considering NWP. Geo spatial Inf. Sci. Ying Xu, Xiangdan Meng, Jianhui Cui, Lin Ma
2023	J	`jnl`	Acid-Base Homeostasis and Implications to the Phenotypic Behaviors of Cancer. Genom. Proteom. Bioinform. Yi Zhou, Wennan Chang, Xiaoyu Lu, Jin Wang, Chi Zhang, Ying Xu
2023	J	`jnl`	Cancer is a Survival Process under Persistent Microenvironmental and Cellular Stresses. Genom. Proteom. Bioinform. Renbo Tan, Yi Zhou, Zheng An, Ying Xu
2023	J	`jnl`	GM(1,1)-Based Weighted K-Nearest Neighbor Algorithm for Indoor Localization. Remote. Sens. Lai Xiang, Ying Xu, Jianhui Cui, Yang Liu, Ruozhou Wang, Guofeng Li
2022	J	`jnl`	A Novel Flexure Piezomotor With Minimized Backward and Nonlinear Motion Effect. IEEE Trans. Ind. Electron. Sifeng He, Hui Tang, Zhongyuan Zhu, Peiyuan Zhang, Ying Xu, Xin Chen
2022	J	`jnl`	Smartphone-Based Unconstrained Step Detection Fusing a Variable Sliding Window and an Adaptive Threshold. Remote. Sens. Ying Xu, Guofeng Li, Zeyu Li, Hao Yu, Jianhui Cui, Jin Wang, Yu Chen
2022	J	`jnl`	Spatial-Temporal Relationship Study between NWP PWV and Precipitation: A Case Study of 'July 20' Heavy Rainstorm in Zhengzhou. Remote. Sens. Ying Xu, Xin Chen, Min Liu, Jin Wang, Fangzhao Zhang, Jianhui Cui, Hongzhan Zhou
2020	—	`conf`	Automatic and Interpretable Model for Periodontitis Diagnosis in Panoramic Radiographs. MICCAI (2) Haoyang Li, Juexiao Zhou, Yi Zhou, Jie Chen, Feng Gao, Ying Xu, Xin Gao
2020	J	`jnl`	Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads". IEEE ACM Trans. Comput. Biol. Bioinform. Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu
2020	—	`conf`	Identification of Cancer Development Related Pathways Based on Co-Expression Analyses. BIBM Hongyang Jiang, Zhihang Wang, Chaoyi Yin, Peishuo Sun, Ying Xu, Huiyan Sun
2020	J	`jnl`	IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads. IEEE ACM Trans. Comput. Biol. Bioinform. Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu
2019	J	`jnl`	A Stable Autoregressive Moving Average Hysteresis Model in Flexure Fast Tool Servo Control. IEEE Trans Autom. Sci. Eng. Jiedong Li, Hui Tang, Zelong Wu, Hongcheng Li, Guixin Zhang, Xin Chen, Jian Gao, Ying Xu, Yunbo He
2019	J	`jnl`	DOOR: a prokaryotic operon database for genome analyses and functional inference. Briefings Bioinform. Huansheng Cao, Qin Ma, Xin Chen, Ying Xu
2019	J	`jnl`	DTA-SiST: de novo transcriptome assembly by using simplified suffix trees. BMC Bioinform. Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu
2019	—	`conf`	Modified Edge-Weighted Centroidal Voronoi Tessellation for Image Segmentation. ISICDM Mengfei Li, Ying Xu, Hongwei Li
2019	—	`conf`	Multi-Classification of Cancer Samples Based on Co-Expression Analyses. BIBM Hongyang Jiang, Qiang Huang, Liang Chen, Zhi Li, Ying Xu, Huiyan Sun, Yi Chang
2019	J	`jnl`	Structural and functional analyses of microbial metabolic networks reveal novel insights into genome-scale metabolic fluxes. Briefings Bioinform. Gaoyang Li, Huansheng Cao, Ying Xu
2019	J	`jnl`	Warburg Effects in Cancer and Normal Proliferating Cells: Two Tales of the Same Name. Genom. Proteom. Bioinform. Huiyan Sun, Liang Chen, Sha Cao, Yanchun Liang, Ying Xu
2018	—	`conf`	DTAST: A Novel Radical Framework for de Novo Transcriptome Assembly Based on Suffix Trees. ICIC (1) Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu
2018	—	`conf`	High Dynamic Control of a Flexure Fast Tool Servo Using On-line Sequential Extreme Learning Machine. AIM Zelong Wu, Hui Tang, Xin Chen, Jian Gao, Yunbo He, Ying Xu, Xun Chen, Suet To, Yangmin Li, Chengqiang Cui
2017	—	`conf`	IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract). ISBRA Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu
2017	J	`jnl`	Transcription regulation by DNA methylation under stressful conditions in human cancer. Quant. Biol. Sha Cao, Yi Zhou, Yue Wu, Tianci Song, Burair Alsaihati, Ying Xu
2016	J	`jnl`	A New Graph Theoretic Approach for Protein Threading. Fundam. Informaticae Yinglei Song, Junfeng Qu, Ying Xu, Liming Cai
2016	C	`conf`	PUEPro: A Computational Pipeline for Prediction of Urine Excretory Proteins. ADMA Yan Wang, Wei Du, Yanchun Liang, Xin Chen, Chi Zhang, Wei Pang, Ying Xu
2015	J	`jnl`	Carrying out Phylogenetic Analyses through Computational Model Checking. Computer Ying Xu
2015	J	`jnl`	Editorial from the Editor-in-Chief. IEEE ACM Trans. Comput. Biol. Bioinform. Ying Xu
2015	J	`jnl`	Revisiting operons: an analysis of the landscape of transcriptional units in E. coli. BMC Bioinform. Xizeng Mao, Qin Ma, Bingqiang Liu, Xin Chen, Hanyuan Zhang, Ying Xu
2014	—	`book`	Cancer Bioinformatics Ying Xu, Juan Cui, David Puett
2014	J	`jnl`	DMINDA: an integrated web server for DNA motif identification and analyses. Nucleic Acids Res. Qin Ma, Hanyuan Zhang, Xizeng Mao, Chuan Zhou, Bingqiang Liu, Xin Chen, Ying Xu
2014	J	`jnl`	DOOR 2.0: presenting operons and their functions through dynamic and integrated views. Nucleic Acids Res. Xizeng Mao, Qin Ma, Chuan Zhou, Xin Chen, Hanyuan Zhang, Jincai Yang, Fenglou Mao, Wei Lai, Ying Xu
2014	J	`jnl`	Editorial from the Editor-in-Chief. IEEE ACM Trans. Comput. Biol. Bioinform. Ying Xu
2014	J	`jnl`	Functional Understanding of the Diverse exon-intron Structures of Human GPCR genes. J. Bioinform. Comput. Biol. Dorothy A. Hammond, Victor Olman, Ying Xu
2014	J	`jnl`	Population dynamics inside cancer biomass driven by repeated hypoxia-reoxygenation cycles. Quant. Biol. Chi Zhang, Sha Cao, Ying Xu
2014	J	`jnl`	Reconsideration of Briefings Bioinform. Qi Liu, Han Zhou, Ruixin Zhu, Ying Xu, Zhiwei Cao
2014	J	`jnl`	Reviewer Appreciation Editorial. IEEE ACM Trans. Comput. Biol. Bioinform. Ying Xu
2013	J	`jnl`	An integrated toolkit for accurate prediction and analysis of Bioinform. Qin Ma, Bingqiang Liu, Chuan Zhou, Yanbin Yin, Guojun Li, Ying Xu
2013	J	`jnl`	Editorial from the New Editor-in-Chief. IEEE ACM Trans. Comput. Biol. Bioinform. Ying Xu
2013	—	`conf`	Elucidation of drivers for cancer initiation and metastasis: A data-mining approach. BIBM Ying Xu
2013	J	`jnl`	Global Genomic Arrangement of Bacterial Genes Is Closely Tied with the Total Transcriptional Efficiency. Genom. Proteom. Bioinform. Qin Ma, Ying Xu
2012	J	`jnl`	Quartet decomposition server: a platform for analyzing phylogenetic trees. BMC Bioinform. Fenglou Mao, David Williams, Olga Zhaxybayeva, Maria S. Poptsova, Pascal Lapierre, J. Peter Gogarten, Ying Xu
2012	J	`jnl`	dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. Yanbin Yin, Xizeng Mao, Jincai Yang, Xin Chen, Fenglou Mao, Ying Xu
2011	J	`jnl`	Genome-wide discovery of missing genes in biological pathways of prokaryotes. BMC Bioinform. Yong Chen, Fenglou Mao, Guojun Li, Ying Xu
2010	J	`jnl`	Foreword: Advances in Computational Systems Bioinformatics. J. Bioinform. Comput. Biol. Ying Xu, Peter W. Markstein
2010	J	`jnl`	Sorting Genomes by Reciprocal Translocations, Insertions, and Deletions. IEEE ACM Trans. Comput. Biol. Bioinform. Xingqin Qi, Guojun Li, Shuguang Li, Ying Xu
2010	J	`jnl`	cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data. Bioinform. Fengfeng Zhou, Ying Xu
2009	J	`jnl`	A Universal operon Predictor for prokaryotic genomes. J. Bioinform. Comput. Biol. Guojun Li, Dongsheng Che, Ying Xu
2009	J	`jnl`	A polynomial-time approximation scheme for embedding hypergraph in a cycle. ACM Trans. Algorithms Guojun Li, Xiaotie Deng, Ying Xu
2009	J	`jnl`	Analyses of domains and domain fusions in human proto-oncogenes. BMC Bioinform. Qi Liu, Jinling Huang, Huiqing Liu, Ping Wan, Xiuzi Ye, Ying Xu
2009	J	`jnl`	Computational Challenges in Deciphering Genomic Structures of Bacteria. J. Comput. Sci. Technol. Ying Xu
2009	J	`jnl`	DOOR: a database for prokaryotic operons. Nucleic Acids Res. Fenglou Mao, PhuongAn Dam, Jacky Chou, Victor Olman, Ying Xu
2009	—	`conf`	Detect the Different Isoforms Using GeneChip Human Exon 1.0 ST Arrays. BMEI Mi-Chia Ma, Hsiao-Fang Lin, Ying Xu
2009	J	`jnl`	Large-Scale Analyses of Glycosylation in Cellulases. Genom. Proteom. Bioinform. Fengfeng Zhou, Victor Olman, Ying Xu
2009	J	`jnl`	Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics. IEEE ACM Trans. Comput. Biol. Bioinform. Victor Olman, Fenglou Mao, Hongwei Wu, Ying Xu
2009	J	`jnl`	Preface. J. Comput. Sci. Technol. Ying Xu, Ming Li, Tao Jiang
2008	J	`jnl`	An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu
2008	J	`jnl`	Barcodes for genomes and applications. BMC Bioinform. Fengfeng Zhou, Victor Olman, Ying Xu
2008	J	`jnl`	Computational prediction of human proteins that can be secreted into the bloodstream. Bioinform. Juan Cui, Qi Liu, David Puett, Ying Xu
2008	J	`jnl`	Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays. J. Bioinform. Comput. Biol. Kyle Ellrott, Jun-tao Guo, Victor Olman, Ying Xu
2008	J	`jnl`	On application of directons to functional classification of genes in prokaryotes. Comput. Biol. Chem. Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu
2008	—	`conf`	PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. ISBRA Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu
2008	J	`jnl`	RNACluster: An integrated tool for RNA secondary structure comparison and clustering. J. Comput. Chem. Qi Liu, Victor Olman, Huiqing Liu, Xiuzi Ye, Shilun Qiu, Ying Xu
2007	—	`conf`	An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. ISBRA Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu
2007	J	`jnl`	An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu
2007	C	`conf`	Operon Prediction in Microbial Genomes Using Decision Tree Approach. CIBCB Dongsheng Che, Jizhen Zhao, Liming Cai, Ying Xu
2007	J	`jnl`	Prediction of J. Bioinform. Comput. Biol. Guojun Li, Jizhu Lu, Victor Olman, Ying Xu
2006	Misc	`conf`	A Point-Process Model for Rapid Identification of Post-Translational Modifications. Pacific Symposium on Biocomputing Bo Yan, G. Tong Zhou, Peng Wang, Zhijie Liu, Vincent A. Emanuele II, Victor Olman, Ying Xu
2006	J	`jnl`	CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinform. Fengfeng Zhou, Yu Xue, Xuebiao Yao, Ying Xu
2006	Misc	`conf`	DigitalTree: A Tool for Displaying Biological Data in Tree Structure. International Conference on Computational Science (2) Robin Kramer, Victor Olman, Ying Xu, Dong Xu
2006	J	`jnl`	Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
2006	Misc	`conf`	Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. Pacific Symposium on Biocomputing Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai
2006	J	`jnl`	Gene Expression Data Analysis in Subtypes of Ovarian Cancer Using Covariance Analysis. J. Bioinform. Comput. Biol. Victor Olman, Chindo Hicks, Peng Wang, Ying Xu
2006	J	`jnl`	Mapping of orthologous genes in the context of biological pathways: An application of integer programming. Proc. Natl. Acad. Sci. USA Fenglou Mao, Zhengchang Su, Victor Olman, PhuongAn Dam, Zhijie Liu, Ying Xu
2006	—	`conf`	Peptide sequence tag-based blind identification of post-translational modifications with point process model. ISMB (Supplement of Bioinformatics) Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai
2006	J	`jnl`	SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Res. Yu Xue, Fengfeng Zhou, Chuanhai Fu, Ying Xu, Xuebiao Yao
2006	Misc	`conf`	Understanding microbial genomic structures and applications to biological pathway inference. GrC Zhengchang Su, Fenglou Mao, Hongwei Wu, PhuongAn Dam, Xin Chen, Tao Jiang, Victor Olman, Brian Palenik, Ying Xu
2005	J	`jnl`	A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. Bioinform. Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu
2005	—	`conf`	Accurate Prediction of Orthologous Gene Groups in Microbes. CSB Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu
2005	—	`ch.`	Computational Reconstruction of the carbon fixation pathway in Synechococcus SP. Wh 8102. Advances in Bioinformatics and Its Applications PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu
2005	C	`conf`	Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
2005	—	`conf`	Improving Operon Prediction in E. coli. CSB Workshops PhuongAn Dam, Victor Olman, Ying Xu
2005	J	`jnl`	More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. J. Comput. Biol. Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu, Tao Jiang
2005	J	`jnl`	On Connected [ Comb. Guojun Li, Ying Xu, Chuanping Chen, Zhenhong Liu
2005	J	`jnl`	PRIME: A Mass Spectrum Data Mining Tool for J. Comput. Sci. Technol. Bo Yan, Youxing Qu, Fenglou Mao, Victor Olman, Ying Xu
2005	—	`conf`	PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification. CSB Workshops Guojun Li, Jizhu Lu, Victor Olman, Ying Xu
2005	J	`jnl`	Preface. J. Comput. Sci. Technol. Ying Xu, Liming Cai, Zhiping Weng
2005	—	`conf`	Structural genomics analysis of alternative splicing and its application in modeling structures of alternatively spliced variants. CSB Workshops Peng Wang, Bo Yan, Jun-tao Guo, Chindo Hicks, Ying Xu
2005	J	`jnl`	The Probability Distribution for a Random Match between an Experimental-theoretical Spectral Pair in Tandem Mass Spectrometry. J. Bioinform. Comput. Biol. Tema Fridman, Jane Razumovskaya, Nathan Verberkmoes, Gregory B. Hurst, Vladimir Protopopescu, Ying Xu
2004	—	`conf`	A Knowledge Base for Computational Pathway Reconstruction. CSB Peng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu
2004	—	`conf`	CUBIC: Search for Binding Sites. CSB Victor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu
2004	—	`conf`	Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. CSB Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu
2004	C	`conf`	Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102. BIBE Zhengchang Su, PhuongAn Dam, Victor Olman, Ying Xu
2004	—	`conf`	In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. CSB PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu
2004	—	`conf`	Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. CSB Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu
2004	—	`conf`	Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. CSB Jun-tao Guo, Ying Xu
2004	J	`jnl`	PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction. Nucleic Acids Res. Jun-tao Guo, Kyle Ellrott, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu
2004	—	`conf`	Pathway Mapping with Operon Information: An Integer-Programming Method. CSB Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu
2004	Misc	`conf`	Protein Fold Recognition Through Application of Residual Dipolar Coupling Data. Pacific Symposium on Biocomputing Youxing Qu, Jun-tao Guo, Victor Olman, Ying Xu
2004	J	`jnl`	Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. J. Comb. Optim. Jinbo Xu, Ming Li, Ying Xu
2004	—	`conf`	Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. CSB Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu
2004	—	`conf`	Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. CSB Peng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu
2003	—	`conf`	A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu
2003	C	`conf`	A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. BIBE Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
2003	J	`jnl`	A computational pipeline for protein structure prediction and analysis at genome scale. Bioinform. Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
2003	J	`jnl`	Approximation algorithms for NMR spectral peak assignment. Theor. Comput. Sci. Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu
2003	—	`conf`	CUBIC: Identification of Regulatory Binding Sites Through Data Clustering. CSB Victor Olman, Dong Xu, Ying Xu
2003	J	`jnl`	Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. J. Bioinform. Comput. Biol. Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu
2003	—	`conf`	Computational Inference of Regulatory Pathways in Microbes. CSB Zhengchang Su, PhuongAn Dam, Xin Chen, Victor Olman, Tao Jiang, Brian Palenik, Ying Xu
2003	J	`jnl`	Cubic: Identification of Regulatory Binding Sites through Data Clustering. J. Bioinform. Comput. Biol. Victor Olman, Dong Xu, Ying Xu
2003	Misc	`conf`	Identification of Regulatory Binding Sites Using Minimum Spanning Trees. Pacific Symposium on Biocomputing Victor Olman, Dong Xu, Ying Xu
2003	J	`jnl`	MOLVIE: an interactive visualization environment for molecular structures. Comput. Methods Programs Biomed. Huandong Sun, Ming Li, Ying Xu
2003	A	`conf`	More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. ESA Zhi-Zhong Chen, Tao Jiang, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu
2003	Misc	`conf`	Protein Threading by Linear Programming. Pacific Symposium on Biocomputing Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu
2003	J	`jnl`	Raptor: Optimal Protein Threading by Linear Programming. J. Bioinform. Comput. Biol. Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu
2003	C	`conf`	Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data. BIBE Yu Chen, Trupti Joshi, Ying Xu, Dong Xu
2002	—	`conf`	An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks. CSB Guo-Hui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu
2002	J	`jnl`	Automated assignment of backbone NMR peaks using constrained bipartite matching. Comput. Sci. Eng. Ying Xu, Dong Xu, Dongsup Kim, Victor Olman, Jane Razumovskaya, Tao Jiang
2002	J	`jnl`	Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinform. Ying Xu, Victor Olman, Dong Xu
2002	C	`conf`	Improved Approximation Algorithms for NMR Spectral Peak Assignment. WABI Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu
2002	J	`jnl`	PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis. Bioinform. Dong Xu, Guangshan Li, Liyou Wu, Jizhong Zhou, Ying Xu
2000	J	`jnl`	A Computational Method for NMR-Constrained Protein Threading. J. Comput. Biol. Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein
2000	J	`jnl`	Protein domain decomposition using a graph-theoretic approach. Bioinform. Ying Xu, Dong Xu, Harold N. Gabow
2000	B	`conf`	Protein structure determination using protein threading and sparse NMR data (extended abstract). RECOMB Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu
2000	J	`jnl`	Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinform. Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher
1998	B	`conf`	A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB Ying Xu, Dong Xu, Edward C. Uberbacher
1998	J	`jnl`	A segmentation algorithm for noisy images: Design and evaluation. Pattern Recognit. Lett. Ying Xu, Victor Olman, Edward C. Uberbacher
1998	J	`jnl`	An Efficient Computational Method for Globally Optimal Threading. J. Comput. Biol. Ying Xu, Dong Xu, Edward C. Uberbacher
1997	J	`jnl`	2D image segmentation using minimum spanning trees. Image Vis. Comput. Ying Xu, Edward C. Uberbacher
1997	J	`jnl`	Automated Gene Identification in Large-Scale Genomic Sequences. J. Comput. Biol. Ying Xu, Edward C. Uberbacher
1997	A	`conf`	Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. ISMB Ying Xu, Richard J. Mural, Edward C. Uberbacher
1997	B	`conf`	Reference-based gene model prediction on DNA contigs (extended abstract). RECOMB Ying Xu, Edward C. Uberbacher
1996	J	`jnl`	A polynomial-time algorithm for a class of protein threading problems. Comput. Appl. Biosci. Ying Xu, Edward C. Uberbacher
1996	J	`jnl`	An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. J. Comput. Biol. Ying Xu, Richard J. Mural, Edward C. Uberbacher
1996	J	`jnl`	Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Comput. Chem. Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher
1996	J	`jnl`	Efficient Theoretic and Practical Algorithms for Linear Matroid Intersection Problems. J. Comput. Syst. Sci. Harold N. Gabow, Ying Xu
1996	J	`jnl`	GRAIL: a multi-agent neural network system for gene identification. Proc. IEEE Ying Xu, Richard J. Mural, J. Ralph Einstein, Manesh B. Shah, Edward C. Uberbacher
1996	A	`conf`	Gene Prediction by Pattern Recognition and Homology Search. ISMB Ying Xu, Edward C. Uberbacher
1995	J	`jnl`	Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Comput. Appl. Biosci. Ying Xu, Richard J. Mural, Edward C. Uberbacher
1994	J	`jnl`	Constructing gene models from accurately predicted exons: an application of dynamic programming. Comput. Appl. Biosci. Ying Xu, Richard J. Mural, Edward C. Uberbacher
1994	B	`conf`	Fast Algorithms for Transversal Matroid Intersection Problems ISAAC Ying Xu, Harold N. Gabow
1989	A*	`conf`	Efficient Algorithms for Independent Assignments on Graphic and Linear Matroids FOCS Harold N. Gabow, Ying Xu