Ying-Chih Chiang

15 papers C 1Journal 14
YearRankTypeTitle / Venue / Authors
2025 J jnl
AFPDeepPred: A Deep Learning Framework for Accurate Identification of Antifreeze Proteins.
J. Chem. Inf. Model.
Xingqiao Lin, Jiahui Guan, Feng Wang, Peilin Xie, Yiyang Zhao, Zhihao Zhao, Mingyi Xiang, Leyi Wei, Xiangrong Liu, Tzong-Yi Lee, Ying-Chih Chiang, Junwen Wang, Lantian Yao
2025 J jnl
Graph-RPI: predicting RNA-protein interactions via graph autoencoder and self-supervised learning strategies.
Briefings Bioinform.
Jiahui Guan, Lantian Yao, Peilin Xie, Zhihao Zhao, Dian Meng, Tzong-Yi Lee, Junwen Wang, Ying-Chih Chiang
2025 J jnl
StackDILI: Enhancing Drug-Induced Liver Injury Prediction through Stacking Strategy with Effective Molecular Representations.
J. Chem. Inf. Model.
Jiahui Guan, Danhong Dong, Peilin Xie, Zhihao Zhao, Yilin Guo, Tzong-Yi Lee, Lantian Yao, Ying-Chih Chiang
2025 J jnl
StackPIP: An Effective Computational Framework for Accurate and Balanced Identification of Proinflammatory Peptides.
J. Chem. Inf. Model.
Lantian Yao, Feng Wang, Peilin Xie, Jiahui Guan, Zhihao Zhao, Xuxin He, Xingchen Liu, Ying-Chih Chiang, Tzong-Yi Lee
2025 J jnl
Toward high-efficiency, low-resource, and explainable neuropeptide prediction with MSKDNP.
Briefings Bioinform.
Peilin Xie, Jiahui Guan, Zhihao Zhao, Yulan Liu, Zhang Cheng, Xuxin He, Xingchen Liu, Yun Tang, Zhenglong Sun, Tzong-Yi Lee, Lantian Yao, Ying-Chih Chiang
2025 C conf
Towards Accurate Identification of Anti-Hepatitis C Peptides Using Stack-AHCP.
CIBCB
Lantian Yao, Chang Liu, Yen-Peng Chiu, Jiahui Guan, Peilin Xie, Zhihao Zhao, Xingchen Liu, Yilin Guo, Yulan Liu, Yunlu Peng, Ying-Chih Chiang, Tzong-Yi Lee
2024 J jnl
A two-stage computational framework for identifying antiviral peptides and their functional types based on contrastive learning and multi-feature fusion strategy.
Briefings Bioinform.
Jiahui Guan, Lantian Yao, Peilin Xie, Chia-Ru Chung, Yixian Huang, Ying-Chih Chiang, Tzong-Yi Lee
2024 J jnl
ACP-CapsPred: an explainable computational framework for identification and functional prediction of anticancer peptides based on capsule network.
Briefings Bioinform.
Lantian Yao, Peilin Xie, Jiahui Guan, Chia-Ru Chung, Wenyang Zhang, Junyang Deng, Yixian Huang, Ying-Chih Chiang, Tzong-Yi Lee
2024 J jnl
CapsEnhancer: An Effective Computational Framework for Identifying Enhancers Based on Chaos Game Representation and Capsule Network.
J. Chem. Inf. Model.
Lantian Yao, Peilin Xie, Jiahui Guan, Chia-Ru Chung, Yixian Huang, Yuxuan Pang, Huacong Wu, Ying-Chih Chiang, Tzong-Yi Lee
2023 J jnl
A risk assessment framework for multidrug-resistant
Briefings Bioinform.
Zhuo Wang, Yuxuan Pang, Chia-Ru Chung, Hsin-Yao Wang, Haiyan Cui, Ying-Chih Chiang, Jorng-Tzong Horng, Jang-Jih Lu, Tzong-Yi Lee
2023 J jnl
Predicting Anti-inflammatory Peptides by Ensemble Machine Learning and Deep Learning.
J. Chem. Inf. Model.
Jiahui Guan, Lantian Yao, Chia-Ru Chung, Peilin Xie, Yilun Zhang, Junyang Deng, Ying-Chih Chiang, Tzong-Yi Lee
2022 J jnl
On the force field optimisation of β-lactam cores using the force field Toolkit.
J. Comput. Aided Mol. Des.
Qiyang Wu, Tianyang Huang, Songyan Xia, Frank Otto, Tzong-Yi Lee, Hsien-Da Huang, Ying-Chih Chiang
2022 J jnl
dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data.
Nucleic Acids Res.
Jhih-Hua Jhong, Lantian Yao, Yuxuan Pang, Zhongyan Li, Chia-Ru Chung, Rulan Wang, Shangfu Li, Wenshuo Li, Mengqi Luo, Renfei Ma, Yuqi Huang, Xiaoning Zhu, Jiahong Zhang, Hexiang Feng, Qifan Cheng, Chunxuan Wang, Kun Xi, Li-Ching Wu, Tzu-Hao Chang, Jorng-Tzong Horng, Lizhe Zhu, Ying-Chih Chiang, Zhuo Wang, Tzong-Yi Lee
2022 J jnl
miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions.
Nucleic Acids Res.
Hsi-Yuan Huang, Yang-Chi-Dung Lin, Shi-Dong Cui, Yixian Huang, Yun Tang, Jia-Tong Xu, Jiayang Bao, Yulin Li, Jia Wen, Hua-Li Zuo, Weijuan Wang, Jing Li, Jie Ni, Yini Ruan, Liping Li, Yidan Chen, Yue-Yang Xie, Zihao Zhu, Xiao-Xuan Cai, Xin-Yi Chen, Lantian Yao, Yigang Chen, Yijun Luo, Shupeng Luxu, Mengqi Luo, Chih-Min Chiu, Kun Ma, Lizhe Zhu, Gui-Juan Cheng, Chen Bai, Ying-Chih Chiang, Liping Wang, Feng-Xiang Wei, Tzong-Yi Lee, Hsien-Da Huang
2018 J jnl
Structural and dynamic basis of substrate permissiveness in hydroxycinnamoyltransferase (HCT).
PLoS Comput. Biol.
Ying-Chih Chiang, Olesya Levsh, Chun Kei Lam, Jing-Ke Weng, Yi Wang