Yi Qin Gao - RankMe

25 papers Journal 24Unranked 1

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Bidirectional GPT. Inf. Process. Manag. Chuanliu Fan, Zicheng Ma, Wenjie Du, Nan Yu, Jun Zhang, Yi Qin Gao, Ziqiang Cao, Guohong Fu
2026	J	`jnl`	Interleaved Tool-Call Reasoning for Protein Function Understanding. CoRR Chuanliu Fan, Zicheng Ma, Huanran Meng, Aijia Zhang, Wenjie Du, Jun Zhang, Yi Qin Gao, Ziqiang Cao, Guohong Fu
2026	J	`jnl`	Multi-objective fluorescent molecule design with a data-physics dual-driven generative framework. CoRR Yanheng Li, Zhichen Pu, Lijiang Yang, Zehao Zhou, Yi Qin Gao
2025	—	`conf`	LlaMol: A Unified Molecule Designer via Preference Ranking and Numerical Enhancement. BIBM Chuanliu Fan, Zicheng Ma, Wenjie Du, Nan Yu, Jun Zhang, Ziqiang Cao, Yi Qin Gao, Guohong Fu
2025	J	`jnl`	Prot2Chat: protein large language model with early fusion of text, sequence, and structure. Bioinform. Zhicong Wang, Zicheng Ma, Ziqiang Cao, Changlong Zhou, Jun Zhang, Yi Qin Gao
2025	J	`jnl`	ProtTeX-CC: Activating In-Context Learning in Protein LLM via Two-Stage Instruction Compression. CoRR Chuanliu Fan, Zicheng Ma, Jun Gao, Nan Yu, Jun Zhang, Ziqiang Cao, Yi Qin Gao, Guohong Fu
2025	J	`jnl`	ProtTeX: Structure-In-Context Reasoning and Editing of Proteins with Large Language Models. CoRR Zicheng Ma, Chuanliu Fan, Zhicong Wang, Zhenyu Chen, Xiaohan Lin, Yanheng Li, Shihao Feng, Jun Zhang, Ziqiang Cao, Yi Qin Gao
2025	J	`jnl`	ProtTeX: Structure-In-Context Reasoning and Editing of Proteins with Large Language Models. J. Chem. Inf. Model. Zicheng Ma, Chuanliu Fan, Zhicong Wang, Zhenyu Chen, Xiaohan Lin, Yanheng Li, Shihao Feng, Ziqiang Cao, Jun Zhang, Yi Qin Gao
2025	J	`jnl`	Shotgun Approach for PROTAC Ternary Complex Modeling and Evaluation. J. Chem. Inf. Model. Tanfeng Zhao, Yi Qin Gao
2025	J	`jnl`	Structural and Thermodynamic Insights into Competitive Binding of the EGR1 and Sp1 Zinc Finger Class of Transcription Factors with a GC-Rich DNA Motif. J. Chem. Inf. Model. Piya Patra, Yi Qin Gao
2024	J	`jnl`	Author Correction: Integrated structure prediction of protein-protein docking with experimental restraints using ColabDock. Nat. Mac. Intell. Shihao Feng, Zhenyu Chen, Chengwei Zhang, Yuhao Xie, Sergey Ovchinnikov, Yi Qin Gao, Sirui Liu
2024	J	`jnl`	DSDPFlex: Flexible-Receptor Docking with GPU Acceleration. J. Chem. Inf. Model. Chengwei Dong, Yupeng Huang, Xiaohan Lin, Hong Zhang, Yi Qin Gao
2024	J	`jnl`	Generating High-Precision Force Fields for Molecular Dynamics Simulations to Study Chemical Reaction Mechanisms using Molecular Configuration Transformer. CoRR Sihao Yuan, Xu Han, Zhaoxin Xie, Cheng Fan, Yi Isaac Yang, Yi Qin Gao
2024	J	`jnl`	Integrated structure prediction of protein-protein docking with experimental restraints using ColabDock. Nat. Mac. Intell. Shihao Feng, Zhenyu Chen, Chengwei Zhang, Yuhao Xie, Sergey Ovchinnikov, Yi Qin Gao, Sirui Liu
2023	J	`jnl`	DSDP: A Blind Docking Strategy Accelerated by GPUs. CoRR Yupeng Huang, Hong Zhang, Siyuan Jiang, Dajiong Yue, Xiaohan Lin, Jun Zhang, Yi Qin Gao
2023	J	`jnl`	DSDP: A Blind Docking Strategy Accelerated by GPUs. J. Chem. Inf. Model. Yupeng Huang, Hong Zhang, Siyuan Jiang, Dajiong Yue, Xiaohan Lin, Jun Zhang, Yi Qin Gao
2023	J	`jnl`	Machine-Learned Invertible Coarse Graining for Multiscale Molecular Modeling. CoRR Jun Zhang, Xiaohan Lin, Weinan E, Yi Qin Gao
2023	J	`jnl`	Microscopic model on indoor propagation of respiratory droplets. Comput. Biol. Chem. Manas Mondal, Srabani Chakrabarty, Yi Qin Gao, Dhananjay Bhattacharyya, Jaydeb Chakrabarti
2022	J	`jnl`	Few-Shot Learning of Accurate Folding Landscape for Protein Structure Prediction. CoRR Jun Zhang, Sirui Liu, Mengyun Chen, Haotian Chu, Min Wang, Zidong Wang, Jialiang Yu, Ningxi Ni, Fan Yu, Diqing Chen, Yi Isaac Yang, Boxin Xue, Lijiang Yang, Yuan Liu, Yi Qin Gao
2022	J	`jnl`	PSP: Million-level Protein Sequence Dataset for Protein Structure Prediction. CoRR Sirui Liu, Jun Zhang, Haotian Chu, Min Wang, Boxin Xue, Ningxi Ni, Jialiang Yu, Yuhao Xie, Zhenyu Chen, Mengyun Chen, Yuan Liu, Piya Patra, Fan Xu, Jie Chen, Zidong Wang, Lijiang Yang, Fan Yu, Lei Chen, Yi Qin Gao
2022	J	`jnl`	Xponge: A Python package to perform pre- and post-processing of molecular simulations. J. Open Source Softw. Yijie Xia, Yi Qin Gao
2020	J	`jnl`	A Perspective on Deep Learning for Molecular Modeling and Simulations. CoRR Jun Zhang, Yao-Kun Lei, Zhen Zhang, Junhan Chang, Maodong Li, Xu Han, Lijiang Yang, Yi Isaac Yang, Yi Qin Gao
2020	J	`jnl`	Deep Reinforcement Learning of Transition States. CoRR Jun Zhang, Yao-Kun Lei, Zhen Zhang, Xu Han, Maodong Li, Lijiang Yang, Yi Isaac Yang, Yi Qin Gao
2020	J	`jnl`	Molecular CT: Unifying Geometry and Representation Learning for Molecules at Different Scales. CoRR Jun Zhang, Yaqiang Zhou, Yao-Kun Lei, Yi Isaac Yang, Yi Qin Gao
2020	J	`jnl`	Toward an understanding of the relation between gene regulation and 3D genome organization. Quant. Biol. Hao Tian, Ying Yang, Sirui Liu, Hui Quan, Yi Qin Gao