Yi-Xue Li

38 papers Journal 36Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
PLRTE: Progressive learning for biomedical relation triplet extraction using large language models.
J. Biomed. Informatics
Yikai Zheng, Bi Zeng, Yi-Chun Feng, Lu Zhou, Yi-Xue Li
2021 J jnl
DysRegSig: an R package for identifying gene dysregulations and building mechanistic signatures in cancer.
Bioinform.
Quanxue Li, Wentao Dai, Jixiang Liu, Qingqing Sang, Yi-Xue Li, Yuan-Yuan Li
2020 J jnl
A novel virtual barcode strategy for accurate panel-wide variant calling in circulating tumor DNA.
BMC Bioinform.
Leilei Wu, Qinfang Deng, Ze Xu, Songwen Zhou, Chao Li, Yi-Xue Li
2018 J jnl
Differential networking meta-analysis of gastric cancer across Asian and American racial groups.
BMC Syst. Biol.
Wentao Dai, Quanxue Li, Bing-Ya Liu, Yi-Xue Li, Yuan-Yuan Li
2017 J jnl
Differential regulation analysis reveals dysfunctional regulatory mechanism involving transcription factors and microRNAs in gastric carcinogenesis.
Artif. Intell. Medicine
Quanxue Li, Junyi Li, Wentao Dai, Yi-Xue Li, Yuan-Yuan Li
2016 J jnl
A novel index of protein-protein interface propensity improves interface residue recognition.
BMC Syst. Biol.
Wentao Dai, Aiping Wu, Liang-Xiao Ma, Yi-Xue Li, Taijiao Jiang, Yuan-Yuan Li
2016 J jnl
A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes.
BMC Syst. Biol.
Su-Juan Wu, Junyi Li, Mushui Cao, Jing Yang, Yi-Xue Li, Yuan-Yuan Li
2016 J jnl
DNetDB: The human disease network database based on dysfunctional regulation mechanism.
BMC Syst. Biol.
Jing Yang, Su-Juan Wu, Shao-You Yang, Jia-Wei Peng, Shi-Nuo Wang, Fu-Yan Wang, Yu-Xing Song, Ting Qi, Yi-Xue Li, Yuan-Yuan Li
2016 — conf
Whole genome sequencing of disease animal models.
BIBM
Yi-Xue Li
2015 J jnl
DSviaDRM: an R package for estimating disease similarity via dysfunctional regulation mechanism.
Bioinform.
Jing Yang, Su-Juan Wu, Yi-Xue Li, Yuan-Yuan Li
2013 J jnl
Structural Basis for the Mutation-Induced Dysfunction of Human CYP2J2: A Computational Study.
J. Chem. Inf. Model.
Shan Cong, Xiao-Tu Ma, Yi-Xue Li, Jing-Fang Wang
2013 J jnl
cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets.
BMC Syst. Biol.
Huayong Xu, Hui Yu, Kang Tu, Qianqian Shi, Chaochun Wei, Yuan-Yuan Li, Yi-Xue Li
2012 J jnl
Autoinhibitory Mechanism for the Mutation-Induced Impaired FGF9 Signaling.
J. Chem. Inf. Model.
Ying Wang, Xiaolin Wu, Dong-Qing Wei, Yi-Xue Li, Jing-Fang Wang
2012 J jnl
Combinatorial network of transcriptional regulation and microRNA regulation in human cancer.
BMC Syst. Biol.
Hui Yu, Kang Tu, Yi-Jie Wang, Jun-Zhe Mao, Lu Xie, Yuan-Yuan Li, Yi-Xue Li
2011 J jnl
A Negative Cooperativity Mechanism of Human CYP2E1 Inferred from Molecular Dynamics Simulations and Free Energy Calculations.
J. Chem. Inf. Model.
Jue Li, Dong-Qing Wei, Jing-Fang Wang, Yi-Xue Li
2011 J jnl
An improved kinetic model for the acetone-butanol-ethanol pathway of Clostridium acetobutylicum and model-based perturbation analysis.
BMC Syst. Biol.
Ru-Dong Li, Yuan-Yuan Li, Lingyi Lu, Cong Ren, Yi-Xue Li, Lei Liu
2011 J jnl
Link-based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs.
BMC Bioinform.
Hui Yu, Bao-Hong Liu, Zhi-Qiang Ye, Chun Li, Yi-Xue Li, Yuan-Yuan Li
2010 J jnl
DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data.
Bioinform.
Bao-Hong Liu, Hui Yu, Kang Tu, Chun Li, Yi-Xue Li, Yuan-Yuan Li
2010 J jnl
Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution.
BMC Bioinform.
Yixiang Shi, Yi-Xue Li, Yuan-Yuan Li
2010 J jnl
Sorting out inherent features of head-to-head gene pairs by evolutionary conservation.
BMC Bioinform.
Yun-Qin Chen, Hui Yu, Yi-Xue Li, Yuan-Yuan Li
2009 J jnl
DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels.
Database J. Biol. Databases Curation
Hui Yu, Fudong Yu, Guoqing Zhang, Xiang Shen, Yun-Qin Chen, Yuan-Yuan Li, Yi-Xue Li
2009 J jnl
Sys-BodyFluid: a systematical database for human body fluid proteome research.
Nucleic Acids Res.
Su-Jun Li, Mao Peng, Hong Li, Boshu Liu, Chuan Wang, Jia-Rui Wu, Yi-Xue Li, Rong Zeng
2008 J jnl
AtPID:
Nucleic Acids Res.
Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi
2008 J jnl
Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation.
PLoS Comput. Biol.
Bin Kang, Yuan-Yuan Li, Xiao Chang, Lei Liu, Yi-Xue Li
2007 J jnl
Modular co-evolution of metabolic networks.
BMC Bioinform.
Jing Zhao, Guo-Hui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li
2007 J jnl
Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.
BMC Bioinform.
Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li
2006 — conf
Comparison of Modularization Methods in Application to Different Biological Networks.
VDMB
Zhuo Wang, Xin-Guang Zhu, Yazhu Chen, Yi-Xue Li, Lei Liu
2006 J jnl
Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance.
PLoS Comput. Biol.
Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li
2006 J jnl
Hierarchical modularity of nested bow-ties in metabolic networks.
BMC Bioinform.
Jing Zhao, Hong Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li
2006 J jnl
KDE Bioscience: Platform for bioinformatics analysis workflows.
J. Biomed. Informatics
Qiang Lu, Pei Hao, Vasa Curcin, Wei-Zhong He, Yuan-Yuan Li, Qingming Luo, Yike Guo, Yi-Xue Li
2006 J jnl
Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance.
PLoS Comput. Biol.
Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li
2006 J jnl
Tumor classification based on independent component analysis.
Int. J. Pattern Recognit. Artif. Intell.
Chun-Hou Zheng, Yan Chen, Xiu-Xia Li, Yi-Xue Li, Yunping Zhu
2005 J jnl
Improving protein secondary structure prediction by using the residue conformational classes.
Pattern Recognit. Lett.
Guang-Zheng Zhang, De-Shuang Huang, Yunping Zhu, Yi-Xue Li
2005 J jnl
MPSS: an integrated database system for surveying a set of proteins.
Bioinform.
Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Boshu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong
2005 J jnl
Refined phylogenetic profiles method for predicting protein-protein interactions.
Bioinform.
Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li
2004 J jnl
Scoring hidden Markov models to discriminate -barrel membrane proteins.
Comput. Biol. Chem.
Yong Deng, Qi Liu, Yi-Xue Li
2003 J jnl
A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins.
Comput. Biol. Chem.
Qi Liu, Yisheng Zhu, Baohua Wang, Yi-Xue Li
2003 J jnl
Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure.
Comput. Biol. Chem.
Qi Liu, Yisheng Zhu, Baohua Wang, Yi-Xue Li