Yi-Kuo Yu

22 papers A 1Journal 21
YearRankTypeTitle / Venue / Authors
2024 J jnl
MiCId GUI: The Graphical User Interface for MiCId, a Fast Microorganism Classification and Identification Workflow with Accurate Statistics and High Recall.
J. Comput. Biol.
Aleksey Y. Ogurtsov, Gelio Alves, Alex Rubio, Brendan Joyce, Björn Andersson, Roger Karlsson, Edward R. B. Moore, Yi-Kuo Yu
2016 J jnl
Confidence assignment for mass spectrometry based peptide identifications via the extreme value distribution.
Bioinform.
Gelio Alves, Yi-Kuo Yu
2015 J jnl
Log-odds sequence logos.
Bioinform.
Yi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul
2015 J jnl
Mass spectrometry-based protein identification with accurate statistical significance assignment.
Bioinform.
Gelio Alves, Yi-Kuo Yu
2012 J jnl
CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores.
Bioinform.
Aleksandar Stojmirovic, Alexander Bliskovsky, Yi-Kuo Yu
2012 J jnl
Information Flow in Interaction Networks II: Channels, Path Lengths, and Potentials.
J. Comput. Biol.
Aleksandar Stojmirovic, Yi-Kuo Yu
2011 J jnl
CytoITMprobe: a network information flow plugin for Cytoscape
CoRR
Aleksandar Stojmirovic, Alexander Bliskovsky, Yi-Kuo Yu
2011 J jnl
On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison.
J. Comput. Biol.
Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul
2011 J jnl
The Complexity of the Dirichlet Model for Multiple Alignment Data.
J. Comput. Biol.
Yi-Kuo Yu, Stephen F. Altschul
2011 J jnl
ppiTrim: constructing non-redundant and up-to-date interactomes.
Database J. Biol. Databases Curation
Aleksandar Stojmirovic, Yi-Kuo Yu
2010 J jnl
Compositional Adjustment of Dirichlet Mixture Priors.
J. Comput. Biol.
Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul
2010 J jnl
Robust and accurate data enrichment statistics via distribution function of sum of weights.
Bioinform.
Aleksandar Stojmirovic, Yi-Kuo Yu
2010 J jnl
The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment.
PLoS Comput. Biol.
Stephen F. Altschul, John C. Wootton, Elena Zaslavsky, Yi-Kuo Yu
2009 J jnl
Geometric Aspects of Biological Sequence Comparison.
J. Comput. Biol.
Aleksandar Stojmirovic, Yi-Kuo Yu
2009 J jnl
ITM Probe: analyzing information flow in protein networks.
Bioinform.
Aleksandar Stojmirovic, Yi-Kuo Yu
2008 A conf
The effectiveness of position- and composition-specific gap costs for protein similarity searches.
ISMB
Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu
2007 J jnl
Information Flow in Interaction Networks.
J. Comput. Biol.
Aleksandar Stojmirovic, Yi-Kuo Yu
2005 J jnl
Robust accurate identification of peptides (RAId): deciphering MS
Bioinform.
Gelio Alves, Yi-Kuo Yu
2005 J jnl
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions.
Bioinform.
Yi-Kuo Yu, Stephen F. Altschul
2004 J jnl
Scale-free networks versus evolutionary drift.
Comput. Biol. Chem.
Teresa M. Przytycka, Yi-Kuo Yu
2002 J jnl
Hybrid alignment: high-performance with universal statistics.
Bioinform.
Yi-Kuo Yu, Ralf Bundschuh, Terence Hwa
2001 J jnl
Statistical Significance of Probabilistic Sequence Alignment and Related Local Hidden Markov Models.
J. Comput. Biol.
Yi-Kuo Yu, Terence Hwa