Yi-Heng Zhu

14 papers Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
BLAM6A-Merge: Leveraging Attention Mechanisms and Feature Fusion Strategies to Improve the Identification of RNA N6-Methyladenosine Sites.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yunpeng Xia, Ying Zhang, Dian Liu, Yi-Heng Zhu, Zhikang Wang, Jiangning Song, Dong-Jun Yu
2024 J jnl
ULDNA: integrating unsupervised multi-source language models with LSTM-attention network for high-accuracy protein-DNA binding site prediction.
Briefings Bioinform.
Yi-Heng Zhu, Zi Liu, Yan Liu, Zhiwei Ji, Dong-Jun Yu
2023 J jnl
Integrating unsupervised language model with multi-view multiple sequence alignments for high-accuracy inter-chain contact prediction.
Comput. Biol. Medicine
Zi Liu, Yi-Heng Zhu, Long-Chen Shen, Xuan Xiao, Wangren Qiu, Dong-Jun Yu
2022 J jnl
Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction.
PLoS Comput. Biol.
Yi-Heng Zhu, Chengxin Zhang, Dong-Jun Yu, Yang Zhang
2022 J jnl
MAResNet: predicting transcription factor binding sites by combining multi-scale bottom-up and top-down attention and residual network.
Briefings Bioinform.
Ke Han, Long-Chen Shen, Yi-Heng Zhu, Jian Xu, Jiangning Song, Dong-Jun Yu
2022 J jnl
TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction.
Genom. Proteom. Bioinform.
Yi-Heng Zhu, Chengxin Zhang, Yan Liu, Gilbert S. Omenn, P. L. Freddolino, Dong-Jun Yu, Yang Zhang
2021 J jnl
Accurate multistage prediction of protein crystallization propensity using deep-cascade forest with sequence-based features.
Briefings Bioinform.
Yi-Heng Zhu, Jun Hu, Fang Ge, Fuyi Li, Jiangning Song, Yang Zhang, Dong-Jun Yu
2021 J jnl
Improving protein fold recognition using triplet network and ensemble deep learning.
Briefings Bioinform.
Yan Liu, Ke Han, Yi-Heng Zhu, Ying Zhang, Long-Chen Shen, Jiangning Song, Dong-Jun Yu
2021 J jnl
TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features.
J. Chem. Inf. Model.
Jun Hu, Liang Rao, Yi-Heng Zhu, Gui-Jun Zhang, Dong-Jun Yu
2021 J jnl
Why can deep convolutional neural networks improve protein fold recognition? A visual explanation by interpretation.
Briefings Bioinform.
Yan Liu, Yi-Heng Zhu, Xiaoning Song, Jiangning Song, Dong-Jun Yu
2020 J jnl
SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network.
J. Chem. Inf. Model.
Ming-Cai Chen, Yang Li, Yi-Heng Zhu, Fang Ge, Dong-Jun Yu
2020 J jnl
TargetDBP: Accurate DNA-Binding Protein Prediction Via Sequence-Based Multi-View Feature Learning.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jun Hu, Xiaogen Zhou, Yi-Heng Zhu, Dong-Jun Yu, Gui-Jun Zhang
2019 J jnl
DNAPred: Accurate Identification of DNA-Binding Sites from Protein Sequence by Ensembled Hyperplane-Distance-Based Support Vector Machines.
J. Chem. Inf. Model.
Yi-Heng Zhu, Jun Hu, Xiaoning Song, Dong-Jun Yu
2019 — conf
DeepTF: Accurate Prediction of Transcription Factor Binding Sites by Combining Multi-scale Convolution and Long Short-Term Memory Neural Network.
IScIDE (2)
Xiao-Rong Bao, Yi-Heng Zhu, Dong-Jun Yu